RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 FBXL4Q9UKA2 621 aa20.5■□□□□ 0.87
CLN3-207ENST00000395653 KALRNO60229 2985 aa20.49■□□□□ 0.87
CLN3-207ENST00000395653 NUP210LQ5VU65 1888 aa20.49■□□□□ 0.87
CLN3-207ENST00000395653 CCDC151A5D8V7 595 aa20.49■□□□□ 0.87
CLN3-207ENST00000395653 DNAJB6O75190 326 aa20.49■□□□□ 0.87
CLN3-207ENST00000395653 ALOX12BO75342 701 aa20.49■□□□□ 0.87
CLN3-207ENST00000395653 CEACAM4O75871 244 aa20.49■□□□□ 0.87
CLN3-207ENST00000395653 TGFB1P01137 390 aa20.49■□□□□ 0.87
CLN3-207ENST00000395653 FHP07954 510 aa20.49■□□□□ 0.87
CLN3-207ENST00000395653 RNH1P13489 461 aaKnown RBP20.49■□□□□ 0.87
CLN3-207ENST00000395653 JAK1P23458 1154 aa20.49■□□□□ 0.87
CLN3-207ENST00000395653 EFNA3P52797 238 aa20.49■□□□□ 0.87
CLN3-207ENST00000395653 ZNF844Q08AG5 666 aa20.49■□□□□ 0.87
CLN3-207ENST00000395653 DDX39BQ13838 428 aaKnown RBP20.49■□□□□ 0.87
CLN3-207ENST00000395653 KRT71Q3SY84 523 aa20.49■□□□□ 0.87
CLN3-207ENST00000395653 C10orf62Q5T681 223 aaPredicted RBP20.49■□□□□ 0.87
CLN3-207ENST00000395653 KHDRBS2Q5VWX1 349 aaKnown RBP20.49■□□□□ 0.87
CLN3-207ENST00000395653 TMEM205Q6UW68 189 aa20.49■□□□□ 0.87
CLN3-207ENST00000395653 MILR1Q7Z6M3 343 aa20.49■□□□□ 0.87
CLN3-207ENST00000395653 SRRM1Q8IYB3 904 aaKnown RBP20.49■□□□□ 0.87
CLN3-207ENST00000395653 IQCKQ8N0W5 287 aa20.49■□□□□ 0.87
CLN3-207ENST00000395653 BANPQ8N9N5 519 aa20.49■□□□□ 0.87
CLN3-207ENST00000395653 OR4F6Q8NGB9 312 aa20.49■□□□□ 0.87
CLN3-207ENST00000395653 KCNC2Q96PR1 638 aa20.49■□□□□ 0.87
CLN3-207ENST00000395653 SERINC2Q96SA4 455 aa20.49■□□□□ 0.87
CLN3-207ENST00000395653 MTERF1Q99551 399 aaKnown RBP20.49■□□□□ 0.87
CLN3-207ENST00000395653 TBCDQ9BTW9 1192 aa20.49■□□□□ 0.87
CLN3-207ENST00000395653 ROGDIQ9GZN7 287 aa20.49■□□□□ 0.87
CLN3-207ENST00000395653 IQCGQ9H095 443 aaKnown RBP20.49■□□□□ 0.87
CLN3-207ENST00000395653 PRM3Q9NNZ6 103 aa20.49■□□□□ 0.87
CLN3-207ENST00000395653 LANCL2Q9NS86 450 aa20.49■□□□□ 0.87
CLN3-207ENST00000395653 PSD3Q9NYI0 1048 aa20.49■□□□□ 0.87
CLN3-207ENST00000395653 MID2Q9UJV3 735 aa20.49■□□□□ 0.87
CLN3-207ENST00000395653 PCDHGA9Q9Y5G4 932 aaKnown RBP20.49■□□□□ 0.87
CLN3-207ENST00000395653 LOC102723996A0A087X1L8 192 aa20.48■□□□□ 0.87
CLN3-207ENST00000395653 A0A0G2JN53 185 aa20.48■□□□□ 0.87
CLN3-207ENST00000395653 EIF4E1BA6NMX2 242 aaKnown RBP20.48■□□□□ 0.87
CLN3-207ENST00000395653 PPP6CO00743 305 aa20.48■□□□□ 0.87
CLN3-207ENST00000395653 B3GALT2O43825 422 aa20.48■□□□□ 0.87
CLN3-207ENST00000395653 C8orf89P0DMQ9 161 aa20.48■□□□□ 0.87
CLN3-207ENST00000395653 CCL11P51671 97 aa20.48■□□□□ 0.87
CLN3-207ENST00000395653 ARFIP1P53367 373 aa20.48■□□□□ 0.87
CLN3-207ENST00000395653 MTTPP55157 894 aa20.48■□□□□ 0.87
CLN3-207ENST00000395653 DEPDC1Q5TB30 811 aa20.48■□□□□ 0.87
CLN3-207ENST00000395653 MFSD4BQ5TF39 518 aa20.48■□□□□ 0.87
CLN3-207ENST00000395653 CA13Q8N1Q1 262 aa20.48■□□□□ 0.87
CLN3-207ENST00000395653 C9orf43Q8TAL5 461 aaPredicted RBP20.48■□□□□ 0.87
CLN3-207ENST00000395653 TRPC4APQ8TEL6 797 aa20.48■□□□□ 0.87
CLN3-207ENST00000395653 METTL21AQ8WXB1 218 aa20.48■□□□□ 0.87
CLN3-207ENST00000395653 RBCK1Q9BYM8 510 aa20.48■□□□□ 0.87
CLN3-207ENST00000395653 SLC25A18Q9H1K4 315 aa20.48■□□□□ 0.87
CLN3-207ENST00000395653 COPS7BQ9H9Q2 264 aaPredicted RBP20.48■□□□□ 0.87
CLN3-207ENST00000395653 PRDM7Q9NQW5 492 aa20.48■□□□□ 0.87
CLN3-207ENST00000395653 PPT2Q9UMR5 302 aa20.48■□□□□ 0.87
CLN3-207ENST00000395653 STK38LQ9Y2H1 464 aa20.48■□□□□ 0.87
CLN3-207ENST00000395653 PSMD12O00232 456 aaPredicted RBP20.47■□□□□ 0.87
CLN3-207ENST00000395653 FOXE1O00358 373 aaPredicted RBP20.47■□□□□ 0.87
CLN3-207ENST00000395653 MLYCDO95822 493 aa20.47■□□□□ 0.87
CLN3-207ENST00000395653 TSPAN8P19075 237 aa20.47■□□□□ 0.87
CLN3-207ENST00000395653 PTX3P26022 381 aaPredicted RBP20.47■□□□□ 0.87
CLN3-207ENST00000395653 TSFMP43897 325 aaKnown RBP20.47■□□□□ 0.87
CLN3-207ENST00000395653 SOX8P57073 446 aa20.47■□□□□ 0.87
CLN3-207ENST00000395653 NAA20P61599 178 aa20.47■□□□□ 0.87
CLN3-207ENST00000395653 RPS13P62277 151 aaKnown RBP20.47■□□□□ 0.87
CLN3-207ENST00000395653 FRG2Q64ET8 278 aa20.47■□□□□ 0.87
CLN3-207ENST00000395653 UBE3DQ7Z6J8 389 aa20.47■□□□□ 0.87
CLN3-207ENST00000395653 RNF175Q8N4F7 328 aa20.47■□□□□ 0.87
CLN3-207ENST00000395653 CCDC63Q8NA47 563 aa20.47■□□□□ 0.87
CLN3-207ENST00000395653 PLPP5Q8NEB5 264 aa20.47■□□□□ 0.87
CLN3-207ENST00000395653 MYRIPQ8NFW9 859 aa20.47■□□□□ 0.87
CLN3-207ENST00000395653 ADAMTS18Q8TE60 1221 aa20.47■□□□□ 0.87
CLN3-207ENST00000395653 C8orf44Q96CB5 159 aa20.47■□□□□ 0.87
CLN3-207ENST00000395653 FRG2BQ96QU4 278 aa20.47■□□□□ 0.87
CLN3-207ENST00000395653 ZNF382Q96SR6 550 aa20.47■□□□□ 0.87
CLN3-207ENST00000395653 MESP1Q9BRJ9 268 aa20.47■□□□□ 0.87
CLN3-207ENST00000395653 CENPKQ9BS16 269 aa20.47■□□□□ 0.87
CLN3-207ENST00000395653 OR51B5Q9H339 312 aa20.47■□□□□ 0.87
CLN3-207ENST00000395653 ATP13A2Q9NQ11 1180 aa20.47■□□□□ 0.87
CLN3-207ENST00000395653 SENP1Q9P0U3 644 aa20.47■□□□□ 0.87
CLN3-207ENST00000395653 C19orf25Q9UFG5 118 aaPredicted RBP20.47■□□□□ 0.87
CLN3-207ENST00000395653 TRPS1Q9UHF7 1281 aa20.47■□□□□ 0.87
CLN3-207ENST00000395653 ZNF225Q9UK10 706 aa20.47■□□□□ 0.87
CLN3-207ENST00000395653 PLLPQ9Y342 182 aa20.47■□□□□ 0.87
CLN3-207ENST00000395653 TLN1Q9Y490 2541 aaKnown RBP20.47■□□□□ 0.87
CLN3-207ENST00000395653 A0A1B0GTL3 188 aa20.46■□□□□ 0.87
CLN3-207ENST00000395653 MAGEB17A8MXT2 336 aa20.46■□□□□ 0.87
CLN3-207ENST00000395653 SCELO95171 688 aa20.46■□□□□ 0.87
CLN3-207ENST00000395653 HPP00738 406 aa20.46■□□□□ 0.87
CLN3-207ENST00000395653 COX6A1P12074 109 aa20.46■□□□□ 0.87
CLN3-207ENST00000395653 CPA3P15088 417 aa20.46■□□□□ 0.87
CLN3-207ENST00000395653 CERS1P27544 350 aa20.46■□□□□ 0.87
CLN3-207ENST00000395653 DNAJB13P59910 316 aa20.46■□□□□ 0.87
CLN3-207ENST00000395653 RHAGQ02094 409 aa20.46■□□□□ 0.87
CLN3-207ENST00000395653 LCP2Q13094 533 aa20.46■□□□□ 0.87
CLN3-207ENST00000395653 AIMP2Q13155 320 aaKnown RBP20.46■□□□□ 0.87
CLN3-207ENST00000395653 FAAH2Q6GMR7 532 aa20.46■□□□□ 0.87
CLN3-207ENST00000395653 TCTN3Q6NUS6 607 aa20.46■□□□□ 0.87
CLN3-207ENST00000395653 LETMD1Q6P1Q0 360 aa20.46■□□□□ 0.87
CLN3-207ENST00000395653 NDUFAF7Q7L592 441 aa20.46■□□□□ 0.87
CLN3-207ENST00000395653 CROCCP2Q86T23 111 aa20.46■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms