RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 TSFMP43897 325 aaKnown RBP17.37■□□□□ 0.37
CCDC88C-203ENST00000389856 TRPC1P48995 793 aa17.37■□□□□ 0.37
CCDC88C-203ENST00000389856 CCT8P50990 548 aa17.37■□□□□ 0.37
CCDC88C-203ENST00000389856 STXBP1P61764 594 aaKnown RBP17.37■□□□□ 0.37
CCDC88C-203ENST00000389856 TRA2BP62995 288 aaKnown RBP17.37■□□□□ 0.37
CCDC88C-203ENST00000389856 MYBPC1Q00872 1141 aa17.37■□□□□ 0.37
CCDC88C-203ENST00000389856 DMWDQ09019 674 aa17.37■□□□□ 0.37
CCDC88C-203ENST00000389856 APOFQ13790 326 aa17.37■□□□□ 0.37
CCDC88C-203ENST00000389856 ATP6AP1Q15904 470 aa17.37■□□□□ 0.37
CCDC88C-203ENST00000389856 RABL3Q5HYI8 236 aa17.37■□□□□ 0.37
CCDC88C-203ENST00000389856 TJAP1Q5JTD0 557 aa17.37■□□□□ 0.37
CCDC88C-203ENST00000389856 CCNYL2Q5T2Q4 361 aa17.37■□□□□ 0.37
CCDC88C-203ENST00000389856 KIAA1614Q5VZ46 1190 aa17.37■□□□□ 0.37
CCDC88C-203ENST00000389856 CAMKMTQ7Z624 323 aa17.37■□□□□ 0.37
CCDC88C-203ENST00000389856 PAQR7Q86WK9 346 aa17.37■□□□□ 0.37
CCDC88C-203ENST00000389856 GALNT15Q8N3T1 639 aa17.37■□□□□ 0.37
CCDC88C-203ENST00000389856 ZNF548Q8NEK5 533 aaPredicted RBP17.37■□□□□ 0.37
CCDC88C-203ENST00000389856 NSMCE2Q96MF7 247 aa17.37■□□□□ 0.37
CCDC88C-203ENST00000389856 CIB1Q99828 191 aa17.37■□□□□ 0.37
CCDC88C-203ENST00000389856 REEP4Q9H6H4 257 aa17.37■□□□□ 0.37
CCDC88C-203ENST00000389856 HRASLS2Q9NWW9 162 aa17.37■□□□□ 0.37
CCDC88C-203ENST00000389856 KLK4Q9Y5K2 254 aa17.37■□□□□ 0.37
CCDC88C-203ENST00000389856 CSNK1G3Q9Y6M4 447 aa17.37■□□□□ 0.37
CCDC88C-203ENST00000389856 ARHGEF17Q96PE2 2063 aaPredicted RBP17.37■□□□□ 0.37
CCDC88C-203ENST00000389856 HEATR5BQ9P2D3 2071 aa17.37■□□□□ 0.37
CCDC88C-203ENST00000389856 A0A096LPI6 279 aa17.36■□□□□ 0.37
CCDC88C-203ENST00000389856 HAT1O14929 419 aa17.36■□□□□ 0.37
CCDC88C-203ENST00000389856 GUCY1B2O75343 617 aa17.36■□□□□ 0.37
CCDC88C-203ENST00000389856 KLK1P06870 262 aa17.36■□□□□ 0.37
CCDC88C-203ENST00000389856 DHPSP49366 369 aaPredicted RBP17.36■□□□□ 0.37
CCDC88C-203ENST00000389856 ARRB1P49407 418 aaPredicted RBP17.36■□□□□ 0.37
CCDC88C-203ENST00000389856 CSNK1EP49674 416 aaKnown RBP17.36■□□□□ 0.37
CCDC88C-203ENST00000389856 NR1H2P55055 460 aa17.36■□□□□ 0.37
CCDC88C-203ENST00000389856 YBX1P67809 324 aaKnown RBP17.36■□□□□ 0.37
CCDC88C-203ENST00000389856 RGS1Q08116 209 aa17.36■□□□□ 0.37
CCDC88C-203ENST00000389856 NRF1Q16656 503 aa17.36■□□□□ 0.37
CCDC88C-203ENST00000389856 HKDC1Q2TB90 917 aa17.36■□□□□ 0.37
CCDC88C-203ENST00000389856 NHSL2Q5HYW2 709 aa17.36■□□□□ 0.37
CCDC88C-203ENST00000389856 BORAQ6PGQ7 559 aa17.36■□□□□ 0.37
CCDC88C-203ENST00000389856 SPESP1Q6UW49 350 aa17.36■□□□□ 0.37
CCDC88C-203ENST00000389856 C1orf210Q8IVY1 113 aa17.36■□□□□ 0.37
CCDC88C-203ENST00000389856 ALDH16A1Q8IZ83 802 aa17.36■□□□□ 0.37
CCDC88C-203ENST00000389856 FBXL6Q8N531 539 aa17.36■□□□□ 0.37
CCDC88C-203ENST00000389856 PATE1Q8WXA2 126 aa17.36■□□□□ 0.37
CCDC88C-203ENST00000389856 GTF2H4Q92759 462 aa17.36■□□□□ 0.37
CCDC88C-203ENST00000389856 DGCR14Q96DF8 476 aaKnown RBP17.36■□□□□ 0.37
CCDC88C-203ENST00000389856 OR2A14Q96R47 310 aa17.36■□□□□ 0.37
CCDC88C-203ENST00000389856 REXO4Q9GZR2 422 aaKnown RBP17.36■□□□□ 0.37
CCDC88C-203ENST00000389856 NIPSNAP3AQ9UFN0 247 aaPredicted RBP17.36■□□□□ 0.37
CCDC88C-203ENST00000389856 ATP6V1HQ9UI12 483 aa17.36■□□□□ 0.37
CCDC88C-203ENST00000389856 PCDHGA4Q9Y5G9 962 aa17.36■□□□□ 0.37
CCDC88C-203ENST00000389856 THADAQ6YHU6 1953 aa17.36■□□□□ 0.37
CCDC88C-203ENST00000389856 A0A0J9YY10 115 aa17.36■□□□□ 0.37
CCDC88C-203ENST00000389856 OR5K3A6NET4 321 aa17.36■□□□□ 0.37
CCDC88C-203ENST00000389856 URADA6NGE7 173 aa17.36■□□□□ 0.37
CCDC88C-203ENST00000389856 LILRA5A6NI73 299 aa17.36■□□□□ 0.37
CCDC88C-203ENST00000389856 SAP18O00422 153 aaKnown RBP17.36■□□□□ 0.37
CCDC88C-203ENST00000389856 YY2O15391 372 aa17.36■□□□□ 0.37
CCDC88C-203ENST00000389856 RASAL1O95294 804 aa17.36■□□□□ 0.37
CCDC88C-203ENST00000389856 PDGFBP01127 241 aaPredicted RBP17.36■□□□□ 0.37
CCDC88C-203ENST00000389856 LDLRP01130 860 aa17.36■□□□□ 0.37
CCDC88C-203ENST00000389856 BCL6P41182 706 aa17.36■□□□□ 0.37
CCDC88C-203ENST00000389856 MAPK12P53778 367 aa17.36■□□□□ 0.37
CCDC88C-203ENST00000389856 CSTF1Q05048 431 aaKnown RBP17.36■□□□□ 0.37
CCDC88C-203ENST00000389856 HEPACAMQ14CZ8 416 aa17.36■□□□□ 0.37
CCDC88C-203ENST00000389856 ZIC1Q15915 447 aa17.36■□□□□ 0.37
CCDC88C-203ENST00000389856 CHCHD2P9Q5T1J5 151 aaPredicted RBP17.36■□□□□ 0.37
CCDC88C-203ENST00000389856 PMS2CLQ68D20 193 aa17.36■□□□□ 0.37
CCDC88C-203ENST00000389856 KRT80Q6KB66 452 aa17.36■□□□□ 0.37
CCDC88C-203ENST00000389856 TSSK4Q6SA08 328 aa17.36■□□□□ 0.37
CCDC88C-203ENST00000389856 RABEPKQ7Z6M1 372 aa17.36■□□□□ 0.37
CCDC88C-203ENST00000389856 ZNF655Q8N720 491 aaPredicted RBP17.36■□□□□ 0.37
CCDC88C-203ENST00000389856 CREB3L4Q8TEY5 395 aa17.36■□□□□ 0.37
CCDC88C-203ENST00000389856 C16orf78Q8WTQ4 265 aa17.36■□□□□ 0.37
CCDC88C-203ENST00000389856 TFAP2CQ92754 450 aa17.36■□□□□ 0.37
CCDC88C-203ENST00000389856 F2RL3Q96RI0 385 aa17.36■□□□□ 0.37
CCDC88C-203ENST00000389856 SLC29A1Q99808 456 aa17.36■□□□□ 0.37
CCDC88C-203ENST00000389856 DUSP26Q9BV47 211 aa17.36■□□□□ 0.37
CCDC88C-203ENST00000389856 BHLHE41Q9C0J9 482 aaPredicted RBP17.36■□□□□ 0.37
CCDC88C-203ENST00000389856 ROGDIQ9GZN7 287 aa17.36■□□□□ 0.37
CCDC88C-203ENST00000389856 VCX3AQ9NNX9 186 aa17.36■□□□□ 0.37
CCDC88C-203ENST00000389856 PAPOLBQ9NRJ5 636 aaKnown RBP17.36■□□□□ 0.37
CCDC88C-203ENST00000389856 GMPR2Q9P2T1 348 aaKnown RBP17.36■□□□□ 0.37
CCDC88C-203ENST00000389856 OR2A25A4D2G3 310 aa17.35■□□□□ 0.37
CCDC88C-203ENST00000389856 PLPP1O14494 284 aa17.35■□□□□ 0.37
CCDC88C-203ENST00000389856 RFXANKO14593 260 aa17.35■□□□□ 0.37
CCDC88C-203ENST00000389856 PIAS2O75928 621 aa17.35■□□□□ 0.37
CCDC88C-203ENST00000389856 H6PDO95479 791 aa17.35■□□□□ 0.37
CCDC88C-203ENST00000389856 SLC35G6P0C7Q6 338 aa17.35■□□□□ 0.37
CCDC88C-203ENST00000389856 TDGF1P13385 188 aa17.35■□□□□ 0.37
CCDC88C-203ENST00000389856 TUBA4AP68366 448 aa17.35■□□□□ 0.37
CCDC88C-203ENST00000389856 ROR2Q01974 943 aaKnown RBP17.35■□□□□ 0.37
CCDC88C-203ENST00000389856 C2orf80Q0P641 193 aa17.35■□□□□ 0.37
CCDC88C-203ENST00000389856 UGT8Q16880 541 aa17.35■□□□□ 0.37
CCDC88C-203ENST00000389856 DUOXA1Q1HG43 343 aa17.35■□□□□ 0.37
CCDC88C-203ENST00000389856 CNPY1Q3B7I2 92 aa17.35■□□□□ 0.37
CCDC88C-203ENST00000389856 TRIM40Q6P9F5 258 aa17.35■□□□□ 0.37
CCDC88C-203ENST00000389856 ARL14Q8N4G2 192 aa17.35■□□□□ 0.37
CCDC88C-203ENST00000389856 WDR48Q8TAF3 677 aa17.35■□□□□ 0.37
CCDC88C-203ENST00000389856 GFM2Q969S9 779 aaKnown RBP17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms