RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 GPX2P18283 190 aa13.12□□□□□ -0.31
PTPRF-202ENST00000372405 DDCP20711 480 aa13.12□□□□□ -0.31
PTPRF-202ENST00000372405 GSTM2P28161 218 aa13.12□□□□□ -0.31
PTPRF-202ENST00000372405 HHEXQ03014 270 aa13.12□□□□□ -0.31
PTPRF-202ENST00000372405 TAF11Q15544 211 aa13.12□□□□□ -0.31
PTPRF-202ENST00000372405 AASDHQ4L235 1098 aaPredicted RBP13.12□□□□□ -0.31
PTPRF-202ENST00000372405 TMEM35AQ53FP2 167 aa13.12□□□□□ -0.31
PTPRF-202ENST00000372405 ABHD17CQ6PCB6 329 aa13.12□□□□□ -0.31
PTPRF-202ENST00000372405 TSSK4Q6SA08 328 aa13.12□□□□□ -0.31
PTPRF-202ENST00000372405 TMEM26Q6ZUK4 368 aa13.12□□□□□ -0.31
PTPRF-202ENST00000372405 MICU2Q8IYU8 434 aa13.12□□□□□ -0.31
PTPRF-202ENST00000372405 TRPV3Q8NET8 790 aa13.12□□□□□ -0.31
PTPRF-202ENST00000372405 GOT1L1Q8NHS2 421 aaPredicted RBP13.12□□□□□ -0.31
PTPRF-202ENST00000372405 FAM120BQ96EK7 910 aaKnown RBP13.12□□□□□ -0.31
PTPRF-202ENST00000372405 ZNF184Q99676 751 aaPredicted RBP13.12□□□□□ -0.31
PTPRF-202ENST00000372405 KLHL25Q9H0H3 589 aa13.12□□□□□ -0.31
PTPRF-202ENST00000372405 SLAMF7Q9NQ25 335 aa13.12□□□□□ -0.31
PTPRF-202ENST00000372405 PRDM7Q9NQW5 492 aa13.12□□□□□ -0.31
PTPRF-202ENST00000372405 THEGQ9P2T0 379 aa13.12□□□□□ -0.31
PTPRF-202ENST00000372405 ERI3O43414 337 aaKnown RBP13.12□□□□□ -0.31
PTPRF-202ENST00000372405 GPR37L1O60883 481 aa13.12□□□□□ -0.31
PTPRF-202ENST00000372405 EPN2O95208 641 aa13.12□□□□□ -0.31
PTPRF-202ENST00000372405 C6orf47O95873 294 aa13.12□□□□□ -0.31
PTPRF-202ENST00000372405 PSMA4P25789 261 aaKnown RBP13.12□□□□□ -0.31
PTPRF-202ENST00000372405 RPL3P39023 403 aaKnown RBP13.12□□□□□ -0.31
PTPRF-202ENST00000372405 SSR2P43308 183 aa13.12□□□□□ -0.31
PTPRF-202ENST00000372405 CSNK1EP49674 416 aaKnown RBP13.12□□□□□ -0.31
PTPRF-202ENST00000372405 MAZP56270 477 aaKnown RBP13.12□□□□□ -0.31
PTPRF-202ENST00000372405 NXPH1P58417 271 aa13.12□□□□□ -0.31
PTPRF-202ENST00000372405 ABHD18Q0P651 414 aa13.12□□□□□ -0.31
PTPRF-202ENST00000372405 ADRM1Q16186 407 aa13.12□□□□□ -0.31
PTPRF-202ENST00000372405 TJAP1Q5JTD0 557 aa13.12□□□□□ -0.31
PTPRF-202ENST00000372405 TOR1AIP1Q5JTV8 583 aa13.12□□□□□ -0.31
PTPRF-202ENST00000372405 CWF19L1Q69YN2 538 aaKnown RBP13.12□□□□□ -0.31
PTPRF-202ENST00000372405 SPESP1Q6UW49 350 aa13.12□□□□□ -0.31
PTPRF-202ENST00000372405 ZNF438Q7Z4V0 828 aa13.12□□□□□ -0.31
PTPRF-202ENST00000372405 TMEM126BQ8IUX1 230 aa13.12□□□□□ -0.31
PTPRF-202ENST00000372405 FAM86B1Q8N7N1 296 aa13.12□□□□□ -0.31
PTPRF-202ENST00000372405 FAM47BQ8NA70 645 aa13.12□□□□□ -0.31
PTPRF-202ENST00000372405 VPS37AQ8NEZ2 397 aa13.12□□□□□ -0.31
PTPRF-202ENST00000372405 OR4A15Q8NGL6 344 aa13.12□□□□□ -0.31
PTPRF-202ENST00000372405 PNPT1Q8TCS8 783 aaKnown RBP13.12□□□□□ -0.31
PTPRF-202ENST00000372405 ZFP90Q8TF47 636 aa13.12□□□□□ -0.31
PTPRF-202ENST00000372405 DNASE2BQ8WZ79 361 aa13.12□□□□□ -0.31
PTPRF-202ENST00000372405 FIG4Q92562 907 aa13.12□□□□□ -0.31
PTPRF-202ENST00000372405 SPACA7Q96KW9 195 aa13.12□□□□□ -0.31
PTPRF-202ENST00000372405 NSMCE2Q96MF7 247 aa13.12□□□□□ -0.31
PTPRF-202ENST00000372405 QRFPRQ96P65 431 aa13.12□□□□□ -0.31
PTPRF-202ENST00000372405 CENPKQ9BS16 269 aa13.12□□□□□ -0.31
PTPRF-202ENST00000372405 KLHL4Q9C0H6 718 aa13.12□□□□□ -0.31
PTPRF-202ENST00000372405 SEMA6AQ9H2E6 1030 aa13.12□□□□□ -0.31
PTPRF-202ENST00000372405 GORASP2Q9H8Y8 452 aa13.12□□□□□ -0.31
PTPRF-202ENST00000372405 TPT1P8Q9HAU6 139 aa13.12□□□□□ -0.31
PTPRF-202ENST00000372405 ATAD3AQ9NVI7 634 aa13.12□□□□□ -0.31
PTPRF-202ENST00000372405 GPATCH2Q9NW75 528 aa13.12□□□□□ -0.31
PTPRF-202ENST00000372405 C5AR2Q9P296 337 aa13.12□□□□□ -0.31
PTPRF-202ENST00000372405 PILRAQ9UKJ1 303 aa13.12□□□□□ -0.31
PTPRF-202ENST00000372405 AURKCQ9UQB9 309 aa13.12□□□□□ -0.31
PTPRF-202ENST00000372405 AP3M1Q9Y2T2 418 aa13.12□□□□□ -0.31
PTPRF-202ENST00000372405 GMEB1Q9Y692 573 aa13.12□□□□□ -0.31
PTPRF-202ENST00000372405 FAM221BA6H8Z2 402 aa13.11□□□□□ -0.31
PTPRF-202ENST00000372405 ZW10O43264 779 aa13.11□□□□□ -0.31
PTPRF-202ENST00000372405 GPIP06744 558 aa13.11□□□□□ -0.31
PTPRF-202ENST00000372405 ANXA6P08133 673 aa13.11□□□□□ -0.31
PTPRF-202ENST00000372405 ABCB1P08183 1280 aaPredicted RBP13.11□□□□□ -0.31
PTPRF-202ENST00000372405 PVRP15151 417 aa13.11□□□□□ -0.31
PTPRF-202ENST00000372405 AQP4P55087 323 aa13.11□□□□□ -0.31
PTPRF-202ENST00000372405 POLE2P56282 527 aa13.11□□□□□ -0.31
PTPRF-202ENST00000372405 RPS15AP62244 130 aaKnown RBP13.11□□□□□ -0.31
PTPRF-202ENST00000372405 C16orf72Q14CZ0 275 aa13.11□□□□□ -0.31
PTPRF-202ENST00000372405 TBCELQ5QJ74 424 aa13.11□□□□□ -0.31
PTPRF-202ENST00000372405 FIGLAQ6QHK4 219 aa13.11□□□□□ -0.31
PTPRF-202ENST00000372405 SLC36A4Q6YBV0 504 aa13.11□□□□□ -0.31
PTPRF-202ENST00000372405 AMIGO2Q86SJ2 522 aa13.11□□□□□ -0.31
PTPRF-202ENST00000372405 SERPINA11Q86U17 422 aa13.11□□□□□ -0.31
PTPRF-202ENST00000372405 PDSS2Q86YH6 399 aa13.11□□□□□ -0.31
PTPRF-202ENST00000372405 KCT2Q8NC54 265 aa13.11□□□□□ -0.31
PTPRF-202ENST00000372405 PAPD5Q8NDF8 572 aaKnown RBP13.11□□□□□ -0.31
PTPRF-202ENST00000372405 OR2L5Q8NG80 312 aa13.11□□□□□ -0.31
PTPRF-202ENST00000372405 OR8K5Q8NH50 307 aa13.11□□□□□ -0.31
PTPRF-202ENST00000372405 LMX1AQ8TE12 382 aa13.11□□□□□ -0.31
PTPRF-202ENST00000372405 RSC1A1Q92681 617 aa13.11□□□□□ -0.31
PTPRF-202ENST00000372405 REXO5Q96IC2 774 aaKnown RBP13.11□□□□□ -0.31
PTPRF-202ENST00000372405 OR2A5Q96R48 311 aa13.11□□□□□ -0.31
PTPRF-202ENST00000372405 CHST8Q9H2A9 424 aa13.11□□□□□ -0.31
PTPRF-202ENST00000372405 MIEF1Q9NQG6 463 aa13.11□□□□□ -0.31
PTPRF-202ENST00000372405 HRASLS2Q9NWW9 162 aa13.11□□□□□ -0.31
PTPRF-202ENST00000372405 KLK4Q9Y5K2 254 aa13.11□□□□□ -0.31
PTPRF-202ENST00000372405 V9GYQ6 96 aa13.11□□□□□ -0.31
PTPRF-202ENST00000372405 C2orf74A8MZ97 194 aa13.11□□□□□ -0.31
PTPRF-202ENST00000372405 CXCR6O00574 342 aa13.11□□□□□ -0.31
PTPRF-202ENST00000372405 P2RX6O15547 441 aa13.11□□□□□ -0.31
PTPRF-202ENST00000372405 PEX1O43933 1283 aa13.11□□□□□ -0.31
PTPRF-202ENST00000372405 SH3BP5O60239 455 aa13.11□□□□□ -0.31
PTPRF-202ENST00000372405 TBX19O60806 448 aa13.11□□□□□ -0.31
PTPRF-202ENST00000372405 KCNK5O95279 499 aa13.11□□□□□ -0.31
PTPRF-202ENST00000372405 ATP6V1C1P21283 382 aa13.11□□□□□ -0.31
PTPRF-202ENST00000372405 HIST1H1TP22492 207 aaPredicted RBP13.11□□□□□ -0.31
PTPRF-202ENST00000372405 ATP5A1P25705 553 aaKnown RBP13.11□□□□□ -0.31
PTPRF-202ENST00000372405 MVDP53602 400 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms