RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 RORAP35398 523 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 PITX1P78337 314 aaPredicted RBP11.11□□□□□ -0.63
VPS39-201ENST00000318006 SEC23BQ15437 767 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 SCGB2B2Q4G0G5 96 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 DESI1Q6ICB0 168 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 PYHIN1Q6K0P9 492 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 ZSWIM9Q86XI8 627 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 OR2L2Q8NH16 312 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 GAL3ST3Q96A11 431 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 ZNF514Q96K75 400 aaPredicted RBP11.11□□□□□ -0.63
VPS39-201ENST00000318006 C1orf74Q96LT6 269 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 TSSK6Q9BXA6 273 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 LYARQ9NX58 379 aaKnown RBP11.11□□□□□ -0.63
VPS39-201ENST00000318006 P2RX2Q9UBL9 471 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 PCDHGB5Q9Y5G0 923 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 LCHNA4D1U4 455 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 MANBAO00462 879 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 PI15O43692 258 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 KDELR3O43731 214 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 TOXO94900 526 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 SOX14O95416 240 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 VIPP01282 170 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 CSN2P05814 226 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 VAMP1P23763 118 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 DGKEP52429 567 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 WNT7BP56706 349 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 C6orf136Q5SQH8 315 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 UBXN11Q5T124 520 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 ANKRD54Q6NXT1 300 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 CYS1Q717R9 158 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 LRRC70Q7Z2Q7 622 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 GOLGA7Q7Z5G4 137 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 ZNF280BQ86YH2 543 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 VWA5B2Q8N398 1253 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 NEIL3Q8TAT5 605 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 CLCC1Q96S66 551 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 ZCCHC3Q9NUD5 404 aaKnown RBP11.11□□□□□ -0.63
VPS39-201ENST00000318006 MRTO4Q9UKD2 239 aaKnown RBP11.11□□□□□ -0.63
VPS39-201ENST00000318006 GABRQQ9UN88 632 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 MYH14Q7Z406 1995 aaKnown RBP11.11□□□□□ -0.63
VPS39-201ENST00000318006 FAM72CH0Y354 149 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 BEST1O76090 585 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 ZNF3P17036 446 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 RPL35P42766 123 aaKnown RBP11.11□□□□□ -0.63
VPS39-201ENST00000318006 CTBP2P56545 445 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 MC1RQ01726 317 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 KCNJ8Q15842 424 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 XKR4Q5GH76 650 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 FAM72AQ5TYM5 149 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 LIPKQ5VXJ0 399 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 FAM72DQ6L9T8 149 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 PRSS48Q7RTY5 328 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 IQCHQ86VS3 1027 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 PARGQ86W56 976 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 FAM72BQ86X60 149 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 C7orf61Q8IZ16 206 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 C2CD4AQ8NCU7 369 aaPredicted RBP11.11□□□□□ -0.63
VPS39-201ENST00000318006 NFKBIDQ8NI38 313 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 RHBDF1Q96CC6 855 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 MKRN2Q9H000 416 aaKnown RBP11.11□□□□□ -0.63
VPS39-201ENST00000318006 ARL6Q9H0F7 186 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 METTL8Q9H825 291 aaKnown RBP11.11□□□□□ -0.63
VPS39-201ENST00000318006 MRM3Q9HC36 420 aaKnown RBP11.11□□□□□ -0.63
VPS39-201ENST00000318006 PADI2Q9Y2J8 665 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 INSL6Q9Y581 213 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 KCTD3Q9Y597 815 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 IRS2Q9Y4H2 1338 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 C2orf92A0A1B0GVN3 265 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 WNT9AO14904 365 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 EEF1E1O43324 174 aaKnown RBP11.11□□□□□ -0.63
VPS39-201ENST00000318006 IFNA21P01568 189 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 EPOP01588 193 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 H2AFB2P0C5Z0 115 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 GJA1P17302 382 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 HOXA11P31270 313 aaPredicted RBP11.11□□□□□ -0.63
VPS39-201ENST00000318006 UQCRC1P31930 480 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 GHRHRQ02643 423 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 CHRNA6Q15825 494 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 SPIN4Q56A73 249 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 KANK2Q63ZY3 851 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 C14orf80Q86SX3 495 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 CILP2Q8IUL8 1156 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 GLS2Q9UI32 602 aa11.11□□□□□ -0.63
VPS39-201ENST00000318006 SIPA1L3O60292 1781 aaPredicted RBP11.1□□□□□ -0.63
VPS39-201ENST00000318006 LOC100509620A0A075B734 347 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 FAM170BA6NMN3 283 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 HAS3O00219 553 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 RBMXL2O75526 392 aaKnown RBP11.1□□□□□ -0.63
VPS39-201ENST00000318006 AVPR1BP47901 424 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 STC1P52823 247 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 ZNF155Q12901 538 aaPredicted RBP11.1□□□□□ -0.63
VPS39-201ENST00000318006 GRIK2Q13002 908 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 CBFBQ13951 182 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 NFE2L1Q14494 772 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 COQ5Q5HYK3 327 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 CGB2Q6NT52 195 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 ZBED3Q96IU2 234 aaPredicted RBP11.1□□□□□ -0.63
VPS39-201ENST00000318006 ZNF597Q96LX8 424 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 OR2AG1Q9H205 316 aa11.1□□□□□ -0.63
VPS39-201ENST00000318006 MTG2Q9H4K7 406 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms