RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 CA3P07451 260 aa19.2■□□□□ 0.66
VPS53-201ENST00000291074 ITIH1P19827 911 aa19.2■□□□□ 0.66
VPS53-201ENST00000291074 CD6P30203 668 aa19.2■□□□□ 0.66
VPS53-201ENST00000291074 CHI3L1P36222 383 aaPredicted RBP19.2■□□□□ 0.66
VPS53-201ENST00000291074 CAMK2GQ13555 558 aaPredicted RBP19.2■□□□□ 0.66
VPS53-201ENST00000291074 SPCS2Q15005 226 aa19.2■□□□□ 0.66
VPS53-201ENST00000291074 PIP5KL1Q5T9C9 394 aa19.2■□□□□ 0.66
VPS53-201ENST00000291074 KIAA1614Q5VZ46 1190 aa19.2■□□□□ 0.66
VPS53-201ENST00000291074 FAM129CQ86XR2 697 aa19.2■□□□□ 0.66
VPS53-201ENST00000291074 OR52J3Q8NH60 311 aa19.2■□□□□ 0.66
VPS53-201ENST00000291074 SLC6A16Q9GZN6 736 aa19.2■□□□□ 0.66
VPS53-201ENST00000291074 PSME2Q9UL46 239 aa19.2■□□□□ 0.66
VPS53-201ENST00000291074 PADI2Q9Y2J8 665 aa19.2■□□□□ 0.66
VPS53-201ENST00000291074 TPP2P29144 1249 aaPredicted RBP19.19■□□□□ 0.66
VPS53-201ENST00000291074 OPRD1P41143 372 aa19.19■□□□□ 0.66
VPS53-201ENST00000291074 PIK3CBP42338 1070 aa19.19■□□□□ 0.66
VPS53-201ENST00000291074 MLLT10P55197 1068 aa19.19■□□□□ 0.66
VPS53-201ENST00000291074 SLC35A2P78381 396 aa19.19■□□□□ 0.66
VPS53-201ENST00000291074 NPRL3Q12980 569 aa19.19■□□□□ 0.66
VPS53-201ENST00000291074 MAD2L1BPQ15013 274 aaPredicted RBP19.19■□□□□ 0.66
VPS53-201ENST00000291074 NPTX1Q15818 432 aa19.19■□□□□ 0.66
VPS53-201ENST00000291074 EGFLAMQ63HQ2 1017 aa19.19■□□□□ 0.66
VPS53-201ENST00000291074 PHOSPHO2Q8TCD6 241 aa19.19■□□□□ 0.66
VPS53-201ENST00000291074 APOL4Q9BPW4 351 aa19.19■□□□□ 0.66
VPS53-201ENST00000291074 TAS2R9Q9NYW1 312 aa19.19■□□□□ 0.66
VPS53-201ENST00000291074 TAAR2Q9P1P5 351 aa19.19■□□□□ 0.66
VPS53-201ENST00000291074 PCDHGA10Q9Y5H3 936 aa19.19■□□□□ 0.66
VPS53-201ENST00000291074 M0QX08 132 aa19.19■□□□□ 0.66
VPS53-201ENST00000291074 BCL10O95999 233 aa19.19■□□□□ 0.66
VPS53-201ENST00000291074 KELP23276 732 aa19.19■□□□□ 0.66
VPS53-201ENST00000291074 PRIM2P49643 509 aa19.19■□□□□ 0.66
VPS53-201ENST00000291074 CCR3P51677 355 aa19.19■□□□□ 0.66
VPS53-201ENST00000291074 RPP38P78345 283 aaKnown RBP19.19■□□□□ 0.66
VPS53-201ENST00000291074 FOXD4Q12950 439 aaPredicted RBP19.19■□□□□ 0.66
VPS53-201ENST00000291074 GPR153Q6NV75 609 aa19.19■□□□□ 0.66
VPS53-201ENST00000291074 PNCKQ6P2M8 343 aa19.19■□□□□ 0.66
VPS53-201ENST00000291074 LCTLQ6UWM7 567 aa19.19■□□□□ 0.66
VPS53-201ENST00000291074 CCDC81Q6ZN84 652 aa19.19■□□□□ 0.66
VPS53-201ENST00000291074 DCUN1D3Q8IWE4 304 aa19.19■□□□□ 0.66
VPS53-201ENST00000291074 PARP8Q8N3A8 854 aa19.19■□□□□ 0.66
VPS53-201ENST00000291074 KCNC2Q96PR1 638 aa19.19■□□□□ 0.66
VPS53-201ENST00000291074 EPYCQ99645 322 aa19.19■□□□□ 0.66
VPS53-201ENST00000291074 ABCG4Q9H172 646 aa19.19■□□□□ 0.66
VPS53-201ENST00000291074 GPN2Q9H9Y4 310 aaPredicted RBP19.19■□□□□ 0.66
VPS53-201ENST00000291074 C1GALT1Q9NS00 363 aa19.19■□□□□ 0.66
VPS53-201ENST00000291074 LYVE1Q9Y5Y7 322 aa19.19■□□□□ 0.66
VPS53-201ENST00000291074 A0A1W2PRB8 838 aa19.18■□□□□ 0.66
VPS53-201ENST00000291074 FEZF1A0PJY2 475 aa19.18■□□□□ 0.66
VPS53-201ENST00000291074 ZNF99A8MXY4 864 aaPredicted RBP19.18■□□□□ 0.66
VPS53-201ENST00000291074 C1QTNF3-AMACRE9PGA6 284 aa19.18■□□□□ 0.66
VPS53-201ENST00000291074 NDUFS2O75306 463 aa19.18■□□□□ 0.66
VPS53-201ENST00000291074 FUT4P22083 530 aa19.18■□□□□ 0.66
VPS53-201ENST00000291074 MASP1P48740 699 aa19.18■□□□□ 0.66
VPS53-201ENST00000291074 CDK3Q00526 305 aa19.18■□□□□ 0.66
VPS53-201ENST00000291074 C10orf62Q5T681 223 aaPredicted RBP19.18■□□□□ 0.66
VPS53-201ENST00000291074 TANGO2Q6ICL3 276 aa19.18■□□□□ 0.66
VPS53-201ENST00000291074 SLC9B2Q86UD5 537 aa19.18■□□□□ 0.66
VPS53-201ENST00000291074 TRIM73Q86UV7 250 aa19.18■□□□□ 0.66
VPS53-201ENST00000291074 ANKRD53Q8N9V6 530 aa19.18■□□□□ 0.66
VPS53-201ENST00000291074 MIEF1Q9NQG6 463 aa19.18■□□□□ 0.66
VPS53-201ENST00000291074 RLIMQ9NVW2 624 aa19.18■□□□□ 0.66
VPS53-201ENST00000291074 DPP7Q9UHL4 492 aa19.18■□□□□ 0.66
VPS53-201ENST00000291074 PLPP1O14494 284 aa19.18■□□□□ 0.66
VPS53-201ENST00000291074 MAGEB3O15480 346 aa19.18■□□□□ 0.66
VPS53-201ENST00000291074 BCAS1O75363 584 aaPredicted RBP19.18■□□□□ 0.66
VPS53-201ENST00000291074 MT-ND2P03891 347 aa19.18■□□□□ 0.66
VPS53-201ENST00000291074 DRD3P35462 400 aa19.18■□□□□ 0.66
VPS53-201ENST00000291074 KRT20P35900 424 aa19.18■□□□□ 0.66
VPS53-201ENST00000291074 FCHO2Q0JRZ9 810 aa19.18■□□□□ 0.66
VPS53-201ENST00000291074 LRRC74AQ0VAA2 488 aa19.18■□□□□ 0.66
VPS53-201ENST00000291074 GPM6BQ13491 265 aa19.18■□□□□ 0.66
VPS53-201ENST00000291074 WSCD2Q2TBF2 565 aa19.18■□□□□ 0.66
VPS53-201ENST00000291074 SMYD1Q8NB12 490 aa19.18■□□□□ 0.66
VPS53-201ENST00000291074 SETD7Q8WTS6 366 aaKnown RBP19.18■□□□□ 0.66
VPS53-201ENST00000291074 F2RL3Q96RI0 385 aa19.18■□□□□ 0.66
VPS53-201ENST00000291074 DUSP21Q9H596 190 aa19.18■□□□□ 0.66
VPS53-201ENST00000291074 PCDHGB3Q9Y5G1 929 aa19.18■□□□□ 0.66
VPS53-201ENST00000291074 J3KTA2 159 aa19.18■□□□□ 0.66
VPS53-201ENST00000291074 TNFRSF11BO00300 401 aa19.18■□□□□ 0.66
VPS53-201ENST00000291074 PCDHGA12O60330 932 aa19.18■□□□□ 0.66
VPS53-201ENST00000291074 FAM20BO75063 409 aa19.18■□□□□ 0.66
VPS53-201ENST00000291074 POU2F2P09086 479 aa19.18■□□□□ 0.66
VPS53-201ENST00000291074 JUNDP17535 347 aa19.18■□□□□ 0.66
VPS53-201ENST00000291074 PTX3P26022 381 aaPredicted RBP19.18■□□□□ 0.66
VPS53-201ENST00000291074 TAS2R38P59533 333 aa19.18■□□□□ 0.66
VPS53-201ENST00000291074 ADAMTSL4Q6UY14 1074 aa19.18■□□□□ 0.66
VPS53-201ENST00000291074 ADGRF3Q8IZF5 1079 aa19.18■□□□□ 0.66
VPS53-201ENST00000291074 FEVQ99581 238 aa19.18■□□□□ 0.66
VPS53-201ENST00000291074 C5AR2Q9P296 337 aa19.18■□□□□ 0.66
VPS53-201ENST00000291074 ENPP5Q9UJA9 477 aa19.18■□□□□ 0.66
VPS53-201ENST00000291074 OR1A2Q9Y585 309 aa19.18■□□□□ 0.66
VPS53-201ENST00000291074 SNX8Q9Y5X2 465 aa19.18■□□□□ 0.66
VPS53-201ENST00000291074 WBP4O75554 376 aaKnown RBP19.17■□□□□ 0.66
VPS53-201ENST00000291074 FADS2O95864 444 aaKnown RBP19.17■□□□□ 0.66
VPS53-201ENST00000291074 INHBBP09529 407 aa19.17■□□□□ 0.66
VPS53-201ENST00000291074 FCARP24071 287 aa19.17■□□□□ 0.66
VPS53-201ENST00000291074 CDH12P55289 794 aa19.17■□□□□ 0.66
VPS53-201ENST00000291074 RPS26P62854 115 aaKnown RBP19.17■□□□□ 0.66
VPS53-201ENST00000291074 PHEXP78562 749 aa19.17■□□□□ 0.66
VPS53-201ENST00000291074 CDK6Q00534 326 aa19.17■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms