RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 ACAT2Q9BWD1 397 aa13.79□□□□□ -0.2
SDC1-201ENST00000254351 GON7Q9BXV9 100 aa13.79□□□□□ -0.2
SDC1-201ENST00000254351 CLN6Q9NWW5 311 aa13.79□□□□□ -0.2
SDC1-201ENST00000254351 FCF1Q9Y324 198 aaKnown RBP13.79□□□□□ -0.2
SDC1-201ENST00000254351 SPIN1Q9Y657 262 aaPredicted RBP13.79□□□□□ -0.2
SDC1-201ENST00000254351 PRAMEF25A6NGN4 478 aa13.79□□□□□ -0.2
SDC1-201ENST00000254351 TRBC1P01850 177 aa13.79□□□□□ -0.2
SDC1-201ENST00000254351 TP53P04637 393 aaPredicted RBP13.79□□□□□ -0.2
SDC1-201ENST00000254351 HBQ1P09105 142 aa13.79□□□□□ -0.2
SDC1-201ENST00000254351 PTGER3P43115 390 aa13.79□□□□□ -0.2
SDC1-201ENST00000254351 SLC9A3P48764 834 aa13.79□□□□□ -0.2
SDC1-201ENST00000254351 PRIM2P49643 509 aa13.79□□□□□ -0.2
SDC1-201ENST00000254351 SGSHP51688 502 aa13.79□□□□□ -0.2
SDC1-201ENST00000254351 BOP1Q14137 746 aaKnown RBP13.79□□□□□ -0.2
SDC1-201ENST00000254351 PLAG1Q6DJT9 500 aa13.79□□□□□ -0.2
SDC1-201ENST00000254351 CCSAPQ6IQ19 270 aaPredicted RBP13.79□□□□□ -0.2
SDC1-201ENST00000254351 ZNF367Q7RTV3 350 aa13.79□□□□□ -0.2
SDC1-201ENST00000254351 C16orf62Q7Z3J2 963 aa13.79□□□□□ -0.2
SDC1-201ENST00000254351 SERPINA11Q86U17 422 aa13.79□□□□□ -0.2
SDC1-201ENST00000254351 DNAJC5GQ8N7S2 189 aa13.79□□□□□ -0.2
SDC1-201ENST00000254351 OR4M2Q8NGB6 313 aa13.79□□□□□ -0.2
SDC1-201ENST00000254351 UPRTQ96BW1 309 aa13.79□□□□□ -0.2
SDC1-201ENST00000254351 C8orf48Q96LL4 319 aa13.79□□□□□ -0.2
SDC1-201ENST00000254351 SSR3Q9UNL2 185 aa13.79□□□□□ -0.2
SDC1-201ENST00000254351 SNX11Q9Y5W9 270 aa13.79□□□□□ -0.2
SDC1-201ENST00000254351 GNG14A0A1W2PPG7 69 aa13.79□□□□□ -0.2
SDC1-201ENST00000254351 HPGDSO60760 199 aa13.79□□□□□ -0.2
SDC1-201ENST00000254351 OR7A10O76100 309 aa13.79□□□□□ -0.2
SDC1-201ENST00000254351 TOXO94900 526 aa13.79□□□□□ -0.2
SDC1-201ENST00000254351 CHMP24386 653 aa13.79□□□□□ -0.2
SDC1-201ENST00000254351 SLC6A4P31645 630 aa13.79□□□□□ -0.2
SDC1-201ENST00000254351 BCL2L1Q07817 233 aa13.79□□□□□ -0.2
SDC1-201ENST00000254351 SNAPC1Q16533 368 aa13.79□□□□□ -0.2
SDC1-201ENST00000254351 LAMTOR1Q6IAA8 161 aa13.79□□□□□ -0.2
SDC1-201ENST00000254351 MON1AQ86VX9 555 aa13.79□□□□□ -0.2
SDC1-201ENST00000254351 TCEANCQ8N8B7 351 aa13.79□□□□□ -0.2
SDC1-201ENST00000254351 LSMEM1Q8N8F7 131 aa13.79□□□□□ -0.2
SDC1-201ENST00000254351 POF1BQ8WVV4 589 aa13.79□□□□□ -0.2
SDC1-201ENST00000254351 ZBED6CLQ96FA7 236 aaPredicted RBP13.79□□□□□ -0.2
SDC1-201ENST00000254351 DOHHQ9BU89 302 aa13.79□□□□□ -0.2
SDC1-201ENST00000254351 GABARAPL3Q9BY60 117 aa13.79□□□□□ -0.2
SDC1-201ENST00000254351 TMEM161AQ9NX61 479 aa13.79□□□□□ -0.2
SDC1-201ENST00000254351 ING3Q9NXR8 418 aa13.79□□□□□ -0.2
SDC1-201ENST00000254351 CRLS1Q9UJA2 301 aa13.79□□□□□ -0.2
SDC1-201ENST00000254351 TMCC3Q9ULS5 477 aa13.79□□□□□ -0.2
SDC1-201ENST00000254351 CLEC4AQ9UMR7 237 aa13.79□□□□□ -0.2
SDC1-201ENST00000254351 FABP7O15540 132 aa13.78□□□□□ -0.2
SDC1-201ENST00000254351 ZNF865P0CJ78 1059 aaPredicted RBP13.78□□□□□ -0.2
SDC1-201ENST00000254351 ALAS2P22557 587 aa13.78□□□□□ -0.2
SDC1-201ENST00000254351 HOXD9P28356 352 aaPredicted RBP13.78□□□□□ -0.2
SDC1-201ENST00000254351 ZXDCQ2QGD7 858 aaPredicted RBP13.78□□□□□ -0.2
SDC1-201ENST00000254351 TRIM46Q7Z4K8 759 aa13.78□□□□□ -0.2
SDC1-201ENST00000254351 RNF130Q86XS8 419 aa13.78□□□□□ -0.2
SDC1-201ENST00000254351 SLC43A3Q8NBI5 491 aa13.78□□□□□ -0.2
SDC1-201ENST00000254351 SLC39A13Q96H72 371 aa13.78□□□□□ -0.2
SDC1-201ENST00000254351 C1orf74Q96LT6 269 aa13.78□□□□□ -0.2
SDC1-201ENST00000254351 MAGEB10Q96LZ2 347 aaPredicted RBP13.78□□□□□ -0.2
SDC1-201ENST00000254351 F5H5T6 163 aa13.78□□□□□ -0.2
SDC1-201ENST00000254351 K7ERQ8 282 aa13.78□□□□□ -0.2
SDC1-201ENST00000254351 EPORP19235 508 aa13.78□□□□□ -0.2
SDC1-201ENST00000254351 TACR2P21452 398 aa13.78□□□□□ -0.2
SDC1-201ENST00000254351 CRYBB2P43320 205 aa13.78□□□□□ -0.2
SDC1-201ENST00000254351 AVPR1BP47901 424 aa13.78□□□□□ -0.2
SDC1-201ENST00000254351 RPS26P62854 115 aaKnown RBP13.78□□□□□ -0.2
SDC1-201ENST00000254351 CSNK2BP67870 215 aa13.78□□□□□ -0.2
SDC1-201ENST00000254351 FGFBP1Q14512 234 aa13.78□□□□□ -0.2
SDC1-201ENST00000254351 ZMYND11Q15326 602 aa13.78□□□□□ -0.2
SDC1-201ENST00000254351 CRTC2Q53ET0 693 aaPredicted RBP13.78□□□□□ -0.2
SDC1-201ENST00000254351 ESCO2Q56NI9 601 aa13.78□□□□□ -0.2
SDC1-201ENST00000254351 TOR1AIP1Q5JTV8 583 aa13.78□□□□□ -0.2
SDC1-201ENST00000254351 IER5LQ5T953 404 aa13.78□□□□□ -0.2
SDC1-201ENST00000254351 FRMPD2BQ6IN97 320 aa13.78□□□□□ -0.2
SDC1-201ENST00000254351 OR52E4Q8NGH9 312 aa13.78□□□□□ -0.2
SDC1-201ENST00000254351 GATAD2BQ8WXI9 593 aa13.78□□□□□ -0.2
SDC1-201ENST00000254351 TADA1Q96BN2 335 aa13.78□□□□□ -0.2
SDC1-201ENST00000254351 ADGRE3Q9BY15 652 aa13.78□□□□□ -0.2
SDC1-201ENST00000254351 RACGAP1Q9H0H5 632 aa13.78□□□□□ -0.2
SDC1-201ENST00000254351 TVP23BQ9NYZ1 205 aa13.78□□□□□ -0.2
SDC1-201ENST00000254351 GLTPQ9NZD2 209 aa13.78□□□□□ -0.2
SDC1-201ENST00000254351 FBXO9Q9UK97 447 aaPredicted RBP13.78□□□□□ -0.2
SDC1-201ENST00000254351 GTPBP1O00178 669 aaKnown RBP13.77□□□□□ -0.2
SDC1-201ENST00000254351 MYL12BO14950 172 aa13.77□□□□□ -0.2
SDC1-201ENST00000254351 GCM2O75603 506 aaPredicted RBP13.77□□□□□ -0.2
SDC1-201ENST00000254351 EBLN1P0CF75 366 aa13.77□□□□□ -0.2
SDC1-201ENST00000254351 ETV6P41212 452 aa13.77□□□□□ -0.2
SDC1-201ENST00000254351 MAP2K3P46734 347 aa13.77□□□□□ -0.2
SDC1-201ENST00000254351 ZNF157P51786 506 aaPredicted RBP13.77□□□□□ -0.2
SDC1-201ENST00000254351 CTBP2P56545 445 aa13.77□□□□□ -0.2
SDC1-201ENST00000254351 SRP54P61011 504 aaKnown RBP13.77□□□□□ -0.2
SDC1-201ENST00000254351 COL9A2Q14055 689 aaPredicted RBP13.77□□□□□ -0.2
SDC1-201ENST00000254351 MICAQ29983 383 aa13.77□□□□□ -0.2
SDC1-201ENST00000254351 ZNF792Q3KQV3 632 aa13.77□□□□□ -0.2
SDC1-201ENST00000254351 ATAT1Q5SQI0 421 aa13.77□□□□□ -0.2
SDC1-201ENST00000254351 LCN1P1Q5VSP4 162 aa13.77□□□□□ -0.2
SDC1-201ENST00000254351 PHC2Q8IXK0 858 aa13.77□□□□□ -0.2
SDC1-201ENST00000254351 FBXL6Q8N531 539 aa13.77□□□□□ -0.2
SDC1-201ENST00000254351 GPRC5AQ8NFJ5 357 aa13.77□□□□□ -0.2
SDC1-201ENST00000254351 SETD6Q8TBK2 473 aa13.77□□□□□ -0.2
SDC1-201ENST00000254351 CRELD1Q96HD1 420 aa13.77□□□□□ -0.2
SDC1-201ENST00000254351 HDHD2Q9H0R4 259 aa13.77□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms