RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 TRIM40Q6P9F5 258 aa19.58■□□□□ 0.73
CLN3-240ENST00000631023 KIRREL2Q6UWL6 708 aa19.58■□□□□ 0.73
CLN3-240ENST00000631023 SRFBP1Q8NEF9 429 aaKnown RBP19.58■□□□□ 0.73
CLN3-240ENST00000631023 OR2L5Q8NG80 312 aa19.58■□□□□ 0.73
CLN3-240ENST00000631023 OR7G3Q8NG95 312 aa19.58■□□□□ 0.73
CLN3-240ENST00000631023 C9orf43Q8TAL5 461 aaPredicted RBP19.58■□□□□ 0.73
CLN3-240ENST00000631023 MS4A6EQ96DS6 147 aa19.58■□□□□ 0.73
CLN3-240ENST00000631023 ABHD17AQ96GS6 310 aa19.58■□□□□ 0.73
CLN3-240ENST00000631023 OR1F2PQ96R84 312 aa19.58■□□□□ 0.73
CLN3-240ENST00000631023 TRIM55Q9BYV6 548 aa19.58■□□□□ 0.73
CLN3-240ENST00000631023 SLC25A18Q9H1K4 315 aa19.58■□□□□ 0.73
CLN3-240ENST00000631023 PCTPQ9UKL6 214 aa19.58■□□□□ 0.73
CLN3-240ENST00000631023 GRID1Q9ULK0 1009 aa19.58■□□□□ 0.73
CLN3-240ENST00000631023 BOD1L1Q8NFC6 3051 aa19.58■□□□□ 0.73
CLN3-240ENST00000631023 TNRC6AQ8NDV7 1962 aaKnown RBP19.58■□□□□ 0.73
CLN3-240ENST00000631023 ERI3O43414 337 aaKnown RBP19.57■□□□□ 0.72
CLN3-240ENST00000631023 DNAJB5O75953 348 aa19.57■□□□□ 0.72
CLN3-240ENST00000631023 ATP5F1P24539 256 aaPredicted RBP19.57■□□□□ 0.72
CLN3-240ENST00000631023 HERVK_113P63132 956 aa19.57■□□□□ 0.72
CLN3-240ENST00000631023 BTN3A2P78410 334 aa19.57■□□□□ 0.72
CLN3-240ENST00000631023 PHEXP78562 749 aa19.57■□□□□ 0.72
CLN3-240ENST00000631023 ADPRMQ3LIE5 342 aa19.57■□□□□ 0.72
CLN3-240ENST00000631023 SH2D5Q6ZV89 423 aa19.57■□□□□ 0.72
CLN3-240ENST00000631023 VN1R5Q7Z5H4 357 aa19.57■□□□□ 0.72
CLN3-240ENST00000631023 SLC22A9Q8IVM8 553 aa19.57■□□□□ 0.72
CLN3-240ENST00000631023 PPP4R1Q8TF05 950 aa19.57■□□□□ 0.72
CLN3-240ENST00000631023 METTL21AQ8WXB1 218 aa19.57■□□□□ 0.72
CLN3-240ENST00000631023 NTMT1Q9BV86 223 aa19.57■□□□□ 0.72
CLN3-240ENST00000631023 C1QTNF3Q9BXJ4 246 aa19.57■□□□□ 0.72
CLN3-240ENST00000631023 ERVK-6Q9BXR3 956 aa19.57■□□□□ 0.72
CLN3-240ENST00000631023 ATP13A2Q9NQ11 1180 aa19.57■□□□□ 0.72
CLN3-240ENST00000631023 TSC22D4Q9Y3Q8 395 aa19.57■□□□□ 0.72
CLN3-240ENST00000631023 KALRNO60229 2985 aa19.57■□□□□ 0.72
CLN3-240ENST00000631023 PCSK5Q92824 1860 aa19.57■□□□□ 0.72
CLN3-240ENST00000631023 FOXO6A8MYZ6 492 aa19.57■□□□□ 0.72
CLN3-240ENST00000631023 SOCS6O14544 535 aa19.57■□□□□ 0.72
CLN3-240ENST00000631023 CHST10O43529 356 aa19.57■□□□□ 0.72
CLN3-240ENST00000631023 RPS17P08708 135 aaKnown RBP19.57■□□□□ 0.72
CLN3-240ENST00000631023 ACPPP15309 386 aa19.57■□□□□ 0.72
CLN3-240ENST00000631023 KRT4P19013 534 aa19.57■□□□□ 0.72
CLN3-240ENST00000631023 HNRNPH1P31943 449 aaKnown RBP19.57■□□□□ 0.72
CLN3-240ENST00000631023 CRHR1P34998 444 aa19.57■□□□□ 0.72
CLN3-240ENST00000631023 TUBB8Q3ZCM7 444 aa19.57■□□□□ 0.72
CLN3-240ENST00000631023 CCDC153Q494R4 210 aa19.57■□□□□ 0.72
CLN3-240ENST00000631023 MINDY4Q4G0A6 757 aa19.57■□□□□ 0.72
CLN3-240ENST00000631023 ADNP2Q6IQ32 1131 aa19.57■□□□□ 0.72
CLN3-240ENST00000631023 CHSY3Q70JA7 882 aa19.57■□□□□ 0.72
CLN3-240ENST00000631023 L3MBTL4Q8NA19 623 aa19.57■□□□□ 0.72
CLN3-240ENST00000631023 ZNF473Q8WTR7 871 aaKnown RBP19.57■□□□□ 0.72
CLN3-240ENST00000631023 CCDC126Q96EE4 140 aa19.57■□□□□ 0.72
CLN3-240ENST00000631023 CMTM7Q96FZ5 175 aa19.57■□□□□ 0.72
CLN3-240ENST00000631023 PEX11GQ96HA9 241 aa19.57■□□□□ 0.72
CLN3-240ENST00000631023 MAGEB10Q96LZ2 347 aaPredicted RBP19.57■□□□□ 0.72
CLN3-240ENST00000631023 SLC25A23Q9BV35 468 aa19.57■□□□□ 0.72
CLN3-240ENST00000631023 FBXL4Q9UKA2 621 aa19.57■□□□□ 0.72
CLN3-240ENST00000631023 H0YIV9 168 aa19.56■□□□□ 0.72
CLN3-240ENST00000631023 PSMD12O00232 456 aaPredicted RBP19.56■□□□□ 0.72
CLN3-240ENST00000631023 COPEO14579 308 aa19.56■□□□□ 0.72
CLN3-240ENST00000631023 DLX3O60479 287 aa19.56■□□□□ 0.72
CLN3-240ENST00000631023 B3GALT4O96024 378 aa19.56■□□□□ 0.72
CLN3-240ENST00000631023 PIK3CBP42338 1070 aa19.56■□□□□ 0.72
CLN3-240ENST00000631023 PLA2G16P53816 162 aa19.56■□□□□ 0.72
CLN3-240ENST00000631023 CPSF6Q16630 551 aaKnown RBP eCLIP19.56■□□□□ 0.72
CLN3-240ENST00000631023 TMEM35AQ53FP2 167 aa19.56■□□□□ 0.72
CLN3-240ENST00000631023 OR11G2Q8NGC1 345 aa19.56■□□□□ 0.72
CLN3-240ENST00000631023 OR5T3Q8NGG3 340 aa19.56■□□□□ 0.72
CLN3-240ENST00000631023 TBC1D20Q96BZ9 403 aa19.56■□□□□ 0.72
CLN3-240ENST00000631023 NPLQ9BXD5 320 aaPredicted RBP19.56■□□□□ 0.72
CLN3-240ENST00000631023 MS4A8Q9BY19 250 aa19.56■□□□□ 0.72
CLN3-240ENST00000631023 SEMA4CQ9C0C4 833 aa19.56■□□□□ 0.72
CLN3-240ENST00000631023 ROGDIQ9GZN7 287 aa19.56■□□□□ 0.72
CLN3-240ENST00000631023 AICDAQ9GZX7 198 aa19.56■□□□□ 0.72
CLN3-240ENST00000631023 SEMA4BQ9NPR2 832 aaPredicted RBP19.56■□□□□ 0.72
CLN3-240ENST00000631023 LGALS13Q9UHV8 139 aa19.56■□□□□ 0.72
CLN3-240ENST00000631023 PLAAQ9Y263 795 aa19.56■□□□□ 0.72
CLN3-240ENST00000631023 RNF11Q9Y3C5 154 aa19.56■□□□□ 0.72
CLN3-240ENST00000631023 OR7A17O14581 309 aa19.55■□□□□ 0.72
CLN3-240ENST00000631023 KLHL41O60662 606 aa19.55■□□□□ 0.72
CLN3-240ENST00000631023 ALOX12BO75342 701 aa19.55■□□□□ 0.72
CLN3-240ENST00000631023 JRKO75564 520 aa19.55■□□□□ 0.72
CLN3-240ENST00000631023 OTCP00480 354 aa19.55■□□□□ 0.72
CLN3-240ENST00000631023 FHP07954 510 aa19.55■□□□□ 0.72
CLN3-240ENST00000631023 RNH1P13489 461 aaKnown RBP19.55■□□□□ 0.72
CLN3-240ENST00000631023 JAK1P23458 1154 aa19.55■□□□□ 0.72
CLN3-240ENST00000631023 OLR1P78380 273 aa19.55■□□□□ 0.72
CLN3-240ENST00000631023 AIMP2Q13155 320 aaKnown RBP19.55■□□□□ 0.72
CLN3-240ENST00000631023 DDX39BQ13838 428 aaKnown RBP19.55■□□□□ 0.72
CLN3-240ENST00000631023 MILR1Q7Z6M3 343 aa19.55■□□□□ 0.72
CLN3-240ENST00000631023 OR52B6Q8NGF0 335 aa19.55■□□□□ 0.72
CLN3-240ENST00000631023 HUS1BQ8NHY5 278 aa19.55■□□□□ 0.72
CLN3-240ENST00000631023 ZNF483Q8TF39 744 aaPredicted RBP19.55■□□□□ 0.72
CLN3-240ENST00000631023 NSUN5Q96P11 429 aaKnown RBP19.55■□□□□ 0.72
CLN3-240ENST00000631023 KCNC2Q96PR1 638 aa19.55■□□□□ 0.72
CLN3-240ENST00000631023 F2RL3Q96RI0 385 aa19.55■□□□□ 0.72
CLN3-240ENST00000631023 CENPKQ9BS16 269 aa19.55■□□□□ 0.72
CLN3-240ENST00000631023 TMEM109Q9BVC6 243 aa19.55■□□□□ 0.72
CLN3-240ENST00000631023 VN1R1Q9GZP7 353 aa19.55■□□□□ 0.72
CLN3-240ENST00000631023 COPS7BQ9H9Q2 264 aaPredicted RBP19.55■□□□□ 0.72
CLN3-240ENST00000631023 ZBTB26Q9HCK0 441 aa19.55■□□□□ 0.72
CLN3-240ENST00000631023 PCDHGA9Q9Y5G4 932 aaKnown RBP19.55■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms