RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 ZNF19P17023 458 aa13.52□□□□□ -0.25
CPSF1-212ENST00000616140 CELP19835 753 aa13.52□□□□□ -0.25
CPSF1-212ENST00000616140 ARCN1P48444 511 aaKnown RBP13.52□□□□□ -0.25
CPSF1-212ENST00000616140 BLKP51451 505 aa13.52□□□□□ -0.25
CPSF1-212ENST00000616140 GINS1Q14691 196 aa13.52□□□□□ -0.25
CPSF1-212ENST00000616140 GFOD2Q3B7J2 385 aa13.52□□□□□ -0.25
CPSF1-212ENST00000616140 SYCE2Q6PIF2 218 aa13.52□□□□□ -0.25
CPSF1-212ENST00000616140 HACD2Q6Y1H2 254 aa13.52□□□□□ -0.25
CPSF1-212ENST00000616140 NUP54Q7Z3B4 507 aa13.52□□□□□ -0.25
CPSF1-212ENST00000616140 NCSTNQ92542 709 aa13.52□□□□□ -0.25
CPSF1-212ENST00000616140 UTP4Q969X6 686 aaKnown RBP13.52□□□□□ -0.25
CPSF1-212ENST00000616140 FUBP1Q96AE4 644 aaKnown RBP13.52□□□□□ -0.25
CPSF1-212ENST00000616140 BRD7Q9NPI1 651 aa13.52□□□□□ -0.25
CPSF1-212ENST00000616140 MYH13Q9UKX3 1938 aa13.52□□□□□ -0.25
CPSF1-212ENST00000616140 FGF18O76093 207 aa13.52□□□□□ -0.25
CPSF1-212ENST00000616140 C7P10643 843 aa13.52□□□□□ -0.25
CPSF1-212ENST00000616140 BMP8BP34820 402 aa13.52□□□□□ -0.25
CPSF1-212ENST00000616140 PHC1P78364 1004 aa13.52□□□□□ -0.25
CPSF1-212ENST00000616140 HYAL2Q12891 473 aa13.52□□□□□ -0.25
CPSF1-212ENST00000616140 LIPJQ5W064 366 aa13.52□□□□□ -0.25
CPSF1-212ENST00000616140 BMP8AQ7Z5Y6 402 aa13.52□□□□□ -0.25
CPSF1-212ENST00000616140 LGALS12Q96DT0 336 aa13.52□□□□□ -0.25
CPSF1-212ENST00000616140 WDR6Q9NNW5 1121 aaKnown RBP13.52□□□□□ -0.25
CPSF1-212ENST00000616140 TRIM36Q9NQ86 728 aa13.52□□□□□ -0.25
CPSF1-212ENST00000616140 CLCA3PQ9Y6N3 262 aa13.52□□□□□ -0.25
CPSF1-212ENST00000616140 A0A1W2PRQ8 180 aa13.51□□□□□ -0.25
CPSF1-212ENST00000616140 SLC35F4A4IF30 521 aa13.51□□□□□ -0.25
CPSF1-212ENST00000616140 C2orf78A6NCI8 922 aa13.51□□□□□ -0.25
CPSF1-212ENST00000616140 CAPN5O15484 640 aaPredicted RBP13.51□□□□□ -0.25
CPSF1-212ENST00000616140 PAK4O96013 591 aaPredicted RBP13.51□□□□□ -0.25
CPSF1-212ENST00000616140 GHRHRQ02643 423 aa13.51□□□□□ -0.25
CPSF1-212ENST00000616140 DOC2AQ14183 400 aa13.51□□□□□ -0.25
CPSF1-212ENST00000616140 SWI5Q1ZZU3 235 aa13.51□□□□□ -0.25
CPSF1-212ENST00000616140 UAP1L1Q3KQV9 507 aa13.51□□□□□ -0.25
CPSF1-212ENST00000616140 C7orf61Q8IZ16 206 aa13.51□□□□□ -0.25
CPSF1-212ENST00000616140 TOMM5Q8N4H5 51 aa13.51□□□□□ -0.25
CPSF1-212ENST00000616140 ANKFN1Q8N957 763 aa13.51□□□□□ -0.25
CPSF1-212ENST00000616140 WACQ9BTA9 647 aa13.51□□□□□ -0.25
CPSF1-212ENST00000616140 NDC1Q9BTX1 674 aa13.51□□□□□ -0.25
CPSF1-212ENST00000616140 ASPNQ9BXN1 380 aa13.51□□□□□ -0.25
CPSF1-212ENST00000616140 MMP27Q9H306 513 aa13.51□□□□□ -0.25
CPSF1-212ENST00000616140 LRP6O75581 1613 aa13.51□□□□□ -0.25
CPSF1-212ENST00000616140 A0A0X1KG70 313 aa13.51□□□□□ -0.25
CPSF1-212ENST00000616140 CCRL2O00421 344 aa13.51□□□□□ -0.25
CPSF1-212ENST00000616140 ARL6IP5O75915 188 aa13.51□□□□□ -0.25
CPSF1-212ENST00000616140 KCNA5P22460 613 aa13.51□□□□□ -0.25
CPSF1-212ENST00000616140 ACRV1P26436 265 aa13.51□□□□□ -0.25
CPSF1-212ENST00000616140 PITPNAQ00169 270 aa13.51□□□□□ -0.25
CPSF1-212ENST00000616140 MLLT1Q03111 559 aaPredicted RBP13.51□□□□□ -0.25
CPSF1-212ENST00000616140 GRSF1Q12849 480 aaKnown RBP eCLIP13.51□□□□□ -0.25
CPSF1-212ENST00000616140 PUM1Q14671 1186 aaKnown RBP eCLIP13.51□□□□□ -0.253e-6■■■□□ 17.4
CPSF1-212ENST00000616140 RTP2Q5QGT7 225 aa13.51□□□□□ -0.25
CPSF1-212ENST00000616140 LCN8Q6JVE9 175 aa13.51□□□□□ -0.25
CPSF1-212ENST00000616140 ALKBH2Q6NS38 261 aa13.51□□□□□ -0.25
CPSF1-212ENST00000616140 OR56A1Q8NGH5 318 aa13.51□□□□□ -0.25
CPSF1-212ENST00000616140 HMGB4Q8WW32 186 aa13.51□□□□□ -0.25
CPSF1-212ENST00000616140 TMEM80Q96HE8 168 aa13.51□□□□□ -0.25
CPSF1-212ENST00000616140 SORT1Q99523 831 aa13.51□□□□□ -0.25
CPSF1-212ENST00000616140 DOHHQ9BU89 302 aa13.51□□□□□ -0.25
CPSF1-212ENST00000616140 PRRG4Q9BZD6 226 aa13.51□□□□□ -0.25
CPSF1-212ENST00000616140 TBL1XR1Q9BZK7 514 aa13.51□□□□□ -0.25
CPSF1-212ENST00000616140 EVA1BQ9NVM1 165 aa13.51□□□□□ -0.25
CPSF1-212ENST00000616140 MGAT4BQ9UQ53 548 aa13.51□□□□□ -0.25
CPSF1-212ENST00000616140 A8MUA0 341 aa13.51□□□□□ -0.25
CPSF1-212ENST00000616140 PSMD9O00233 223 aa13.51□□□□□ -0.25
CPSF1-212ENST00000616140 KMOO15229 486 aa13.51□□□□□ -0.25
CPSF1-212ENST00000616140 IFI30P13284 250 aa13.51□□□□□ -0.25
CPSF1-212ENST00000616140 MATN1P21941 496 aa13.51□□□□□ -0.25
CPSF1-212ENST00000616140 TIA1P31483 386 aaKnown RBP eCLIP13.51□□□□□ -0.25
CPSF1-212ENST00000616140 ENPP2Q13822 863 aa13.51□□□□□ -0.25
CPSF1-212ENST00000616140 KCNC3Q14003 757 aa13.51□□□□□ -0.25
CPSF1-212ENST00000616140 PON3Q15166 354 aa13.51□□□□□ -0.25
CPSF1-212ENST00000616140 ZNF648Q5T619 568 aaPredicted RBP13.51□□□□□ -0.25
CPSF1-212ENST00000616140 ZNF675Q8TD23 568 aa13.51□□□□□ -0.25
CPSF1-212ENST00000616140 KCNK13Q9HB14 408 aa13.51□□□□□ -0.25
CPSF1-212ENST00000616140 AASSQ9UDR5 926 aa13.51□□□□□ -0.25
CPSF1-212ENST00000616140 PCTPQ9UKL6 214 aa13.51□□□□□ -0.25
CPSF1-212ENST00000616140 PDCD5O14737 125 aa13.51□□□□□ -0.25
CPSF1-212ENST00000616140 CKMT1AP12532 417 aa13.51□□□□□ -0.25
CPSF1-212ENST00000616140 ATF6P18850 670 aa13.51□□□□□ -0.25
CPSF1-212ENST00000616140 ERVPABLB-1P60509 514 aa13.51□□□□□ -0.25
CPSF1-212ENST00000616140 LSAMPQ13449 338 aa13.51□□□□□ -0.25
CPSF1-212ENST00000616140 PON2Q15165 354 aa13.51□□□□□ -0.25
CPSF1-212ENST00000616140 C10orf62Q5T681 223 aaPredicted RBP13.51□□□□□ -0.25
CPSF1-212ENST00000616140 CARM1Q86X55 608 aa13.51□□□□□ -0.25
CPSF1-212ENST00000616140 CCDC116Q8IYX3 515 aa13.51□□□□□ -0.25
CPSF1-212ENST00000616140 SLC22A15Q8IZD6 547 aa13.51□□□□□ -0.25
CPSF1-212ENST00000616140 TTC9BQ8N6N2 239 aa13.51□□□□□ -0.25
CPSF1-212ENST00000616140 OVCA2Q8WZ82 227 aa13.51□□□□□ -0.25
CPSF1-212ENST00000616140 MCHR1Q99705 422 aa13.51□□□□□ -0.25
CPSF1-212ENST00000616140 BTBD1Q9H0C5 482 aa13.51□□□□□ -0.25
CPSF1-212ENST00000616140 GPN3Q9UHW5 284 aaPredicted RBP13.51□□□□□ -0.25
CPSF1-212ENST00000616140 ADAMTS5Q9UNA0 930 aa13.51□□□□□ -0.25
CPSF1-212ENST00000616140 RENP00797 406 aa13.5□□□□□ -0.25
CPSF1-212ENST00000616140 CHRNA1P02708 482 aa13.5□□□□□ -0.25
CPSF1-212ENST00000616140 YES1P07947 543 aa13.5□□□□□ -0.25
CPSF1-212ENST00000616140 C1GALT1C1LP0DN25 315 aa13.5□□□□□ -0.25
CPSF1-212ENST00000616140 CBX5P45973 191 aa13.5□□□□□ -0.25
CPSF1-212ENST00000616140 NPRL3Q12980 569 aa13.5□□□□□ -0.25
CPSF1-212ENST00000616140 AMZ1Q400G9 498 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms