RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 C10orf90Q96M02 699 aa13.64□□□□□ -0.23
UPF1-211ENST00000600868 TEFMQ96QE5 360 aaKnown RBP13.64□□□□□ -0.23
UPF1-211ENST00000600868 ZPBPQ9BS86 351 aa13.64□□□□□ -0.23
UPF1-211ENST00000600868 TBCDQ9BTW9 1192 aa13.64□□□□□ -0.23
UPF1-211ENST00000600868 NDC1Q9BTX1 674 aa13.64□□□□□ -0.23
UPF1-211ENST00000600868 DDA1Q9BW61 102 aa13.64□□□□□ -0.23
UPF1-211ENST00000600868 MRPL1Q9BYD6 325 aaKnown RBP13.64□□□□□ -0.23
UPF1-211ENST00000600868 ASPSCR1Q9BZE9 553 aa13.64□□□□□ -0.23
UPF1-211ENST00000600868 B3GNT4Q9C0J1 378 aa13.64□□□□□ -0.23
UPF1-211ENST00000600868 AKTIPQ9H8T0 292 aa13.64□□□□□ -0.23
UPF1-211ENST00000600868 LRTM1Q9HBL6 345 aa13.64□□□□□ -0.23
UPF1-211ENST00000600868 PRDM7Q9NQW5 492 aa13.64□□□□□ -0.23
UPF1-211ENST00000600868 CUTCQ9NTM9 273 aa13.64□□□□□ -0.23
UPF1-211ENST00000600868 PISDQ9UG56 409 aa13.64□□□□□ -0.23
UPF1-211ENST00000600868 DCTN4Q9UJW0 460 aa13.64□□□□□ -0.23
UPF1-211ENST00000600868 ADAM29Q9UKF5 820 aa13.64□□□□□ -0.23
UPF1-211ENST00000600868 SRPK3Q9UPE1 567 aa13.64□□□□□ -0.23
UPF1-211ENST00000600868 PCDHGA8Q9Y5G5 932 aa13.64□□□□□ -0.23
UPF1-211ENST00000600868 PCDHGA3Q9Y5H0 932 aa13.64□□□□□ -0.23
UPF1-211ENST00000600868 CFAP54Q96N23 3096 aa13.64□□□□□ -0.23
UPF1-211ENST00000600868 KNTC1P50748 2209 aa13.63□□□□□ -0.23
UPF1-211ENST00000600868 A0A088AWK7 358 aa13.63□□□□□ -0.23
UPF1-211ENST00000600868 C4orf51C9J302 202 aa13.63□□□□□ -0.23
UPF1-211ENST00000600868 SAP18O00422 153 aaKnown RBP13.63□□□□□ -0.23
UPF1-211ENST00000600868 SEC22BO75396 215 aa13.63□□□□□ -0.23
UPF1-211ENST00000600868 SCELO95171 688 aa13.63□□□□□ -0.23
UPF1-211ENST00000600868 HBQ1P09105 142 aa13.63□□□□□ -0.23
UPF1-211ENST00000600868 ZNF10P21506 573 aaPredicted RBP13.63□□□□□ -0.23
UPF1-211ENST00000600868 EPHA3P29320 983 aa13.63□□□□□ -0.23
UPF1-211ENST00000600868 BSGP35613 385 aa13.63□□□□□ -0.23
UPF1-211ENST00000600868 RAB8AP61006 207 aa13.63□□□□□ -0.23
UPF1-211ENST00000600868 SKP1P63208 163 aa13.63□□□□□ -0.23
UPF1-211ENST00000600868 ACSM2AQ08AH3 577 aa13.63□□□□□ -0.23
UPF1-211ENST00000600868 KIAA0040Q15053 153 aa13.63□□□□□ -0.23
UPF1-211ENST00000600868 GALNTL6Q49A17 601 aa13.63□□□□□ -0.23
UPF1-211ENST00000600868 ATP6AP1LQ52LC2 224 aa13.63□□□□□ -0.23
UPF1-211ENST00000600868 C3orf38Q5JPI3 329 aa13.63□□□□□ -0.23
UPF1-211ENST00000600868 C6orf136Q5SQH8 315 aa13.63□□□□□ -0.23
UPF1-211ENST00000600868 ACSM2BQ68CK6 577 aa13.63□□□□□ -0.23
UPF1-211ENST00000600868 OR4C11Q6IEV9 310 aa13.63□□□□□ -0.23
UPF1-211ENST00000600868 OGFOD2Q6N063 350 aa13.63□□□□□ -0.23
UPF1-211ENST00000600868 RHBDD2Q6NTF9 364 aa13.63□□□□□ -0.23
UPF1-211ENST00000600868 PWWP2BQ6NUJ5 590 aa13.63□□□□□ -0.23
UPF1-211ENST00000600868 GALNT18Q6P9A2 607 aa13.63□□□□□ -0.23
UPF1-211ENST00000600868 ACAD11Q709F0 780 aa13.63□□□□□ -0.23
UPF1-211ENST00000600868 PAGE2Q7Z2X7 111 aa13.63□□□□□ -0.23
UPF1-211ENST00000600868 C1orf52Q8N6N3 182 aaKnown RBP13.63□□□□□ -0.23
UPF1-211ENST00000600868 CEP70Q8NHQ1 597 aa13.63□□□□□ -0.23
UPF1-211ENST00000600868 ZCCHC10Q8TBK6 192 aa13.63□□□□□ -0.23
UPF1-211ENST00000600868 MVB12AQ96EY5 273 aa13.63□□□□□ -0.23
UPF1-211ENST00000600868 QRFPRQ96P65 431 aa13.63□□□□□ -0.23
UPF1-211ENST00000600868 CTRCQ99895 268 aa13.63□□□□□ -0.23
UPF1-211ENST00000600868 C17orf62Q9BQA9 187 aa13.63□□□□□ -0.23
UPF1-211ENST00000600868 EBF4Q9BQW3 602 aa13.63□□□□□ -0.23
UPF1-211ENST00000600868 CCDC28BQ9BUN5 200 aa13.63□□□□□ -0.23
UPF1-211ENST00000600868 ZNF717Q9BY31 904 aaPredicted RBP13.63□□□□□ -0.23
UPF1-211ENST00000600868 ROGDIQ9GZN7 287 aa13.63□□□□□ -0.23
UPF1-211ENST00000600868 FAM107BQ9H098 131 aa13.63□□□□□ -0.23
UPF1-211ENST00000600868 WDR55Q9H6Y2 383 aaPredicted RBP13.63□□□□□ -0.23
UPF1-211ENST00000600868 DDX31Q9H8H2 851 aaKnown RBP13.63□□□□□ -0.23
UPF1-211ENST00000600868 ACTR5Q9H9F9 607 aaPredicted RBP13.63□□□□□ -0.23
UPF1-211ENST00000600868 ANKHQ9HCJ1 492 aa13.63□□□□□ -0.23
UPF1-211ENST00000600868 LHX9Q9NQ69 397 aa13.63□□□□□ -0.23
UPF1-211ENST00000600868 SATB2Q9UPW6 733 aa13.63□□□□□ -0.23
UPF1-211ENST00000600868 MRPS2Q9Y399 296 aaKnown RBP13.63□□□□□ -0.23
UPF1-211ENST00000600868 TMED5Q9Y3A6 229 aa13.63□□□□□ -0.23
UPF1-211ENST00000600868 SPTBP11277 2137 aa13.63□□□□□ -0.23
UPF1-211ENST00000600868 A0A0G2JND7 137 aa13.62□□□□□ -0.23
UPF1-211ENST00000600868 GOLGA8QA0A0J9YX86 632 aa13.62□□□□□ -0.23
UPF1-211ENST00000600868 PMS2P1A4D2B8 440 aa13.62□□□□□ -0.23
UPF1-211ENST00000600868 GOLGA8OA6NCC3 632 aa13.62□□□□□ -0.23
UPF1-211ENST00000600868 GOLGA8NF8WBI6 632 aa13.62□□□□□ -0.23
UPF1-211ENST00000600868 RTCAO00442 366 aaKnown RBP13.62□□□□□ -0.23
UPF1-211ENST00000600868 DSCR3O14972 297 aa13.62□□□□□ -0.23
UPF1-211ENST00000600868 FOXS1O43638 330 aa13.62□□□□□ -0.23
UPF1-211ENST00000600868 GALR3O60755 368 aaPredicted RBP13.62□□□□□ -0.23
UPF1-211ENST00000600868 PEX11AO75192 247 aa13.62□□□□□ -0.23
UPF1-211ENST00000600868 SCRG1O75711 98 aa13.62□□□□□ -0.23
UPF1-211ENST00000600868 KLHL18O94889 574 aa13.62□□□□□ -0.23
UPF1-211ENST00000600868 MED26O95402 600 aa13.62□□□□□ -0.23
UPF1-211ENST00000600868 TIAF1O95411 115 aa13.62□□□□□ -0.23
UPF1-211ENST00000600868 NSA2O95478 260 aaKnown RBP13.62□□□□□ -0.23
UPF1-211ENST00000600868 ACPPP15309 386 aa13.62□□□□□ -0.23
UPF1-211ENST00000600868 LBPP18428 481 aa13.62□□□□□ -0.23
UPF1-211ENST00000600868 HIST1H1TP22492 207 aaPredicted RBP13.62□□□□□ -0.23
UPF1-211ENST00000600868 ATP5A1P25705 553 aaKnown RBP13.62□□□□□ -0.23
UPF1-211ENST00000600868 MAPK10P53779 464 aa13.62□□□□□ -0.23
UPF1-211ENST00000600868 MTTPP55157 894 aa13.62□□□□□ -0.23
UPF1-211ENST00000600868 SNRPNP63162 240 aaKnown RBP13.62□□□□□ -0.23
UPF1-211ENST00000600868 EMX2Q04743 252 aa13.62□□□□□ -0.23
UPF1-211ENST00000600868 MAD2L1Q13257 205 aaPredicted RBP13.62□□□□□ -0.23
UPF1-211ENST00000600868 DEFB134Q4QY38 66 aa13.62□□□□□ -0.23
UPF1-211ENST00000600868 RFTN2Q52LD8 501 aaPredicted RBP13.62□□□□□ -0.23
UPF1-211ENST00000600868 PRAMEF17Q5VTA0 474 aa13.62□□□□□ -0.23
UPF1-211ENST00000600868 ZNF793Q6ZN11 406 aa13.62□□□□□ -0.23
UPF1-211ENST00000600868 COMMD6Q7Z4G1 85 aa13.62□□□□□ -0.23
UPF1-211ENST00000600868 PARP9Q8IXQ6 854 aa13.62□□□□□ -0.23
UPF1-211ENST00000600868 ZCCHC7Q8N3Z6 543 aaKnown RBP13.62□□□□□ -0.23
UPF1-211ENST00000600868 FCRL1Q96LA6 429 aa13.62□□□□□ -0.23
UPF1-211ENST00000600868 OR52B2Q96RD2 323 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms