RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 ZNF700Q9H0M5 742 aa15.23■□□□□ 0.03
TRIM28-213ENST00000598355 MRPL46Q9H2W6 279 aaKnown RBP15.23■□□□□ 0.03
TRIM28-213ENST00000598355 MKL2Q9ULH7 1088 aa15.23■□□□□ 0.03
TRIM28-213ENST00000598355 TNPO3Q9Y5L0 923 aaKnown RBP15.23■□□□□ 0.03
TRIM28-213ENST00000598355 LRRC14BA6NHZ5 514 aa15.22■□□□□ 0.03
TRIM28-213ENST00000598355 KLHL41O60662 606 aa15.22■□□□□ 0.03
TRIM28-213ENST00000598355 DNAJB6O75190 326 aa15.22■□□□□ 0.03
TRIM28-213ENST00000598355 SERPIND1P05546 499 aa15.22■□□□□ 0.03
TRIM28-213ENST00000598355 HEXBP07686 556 aa15.22■□□□□ 0.03
TRIM28-213ENST00000598355 CASRP41180 1078 aa15.22■□□□□ 0.03
TRIM28-213ENST00000598355 LGSNQ5TDP6 509 aa15.22■□□□□ 0.03
TRIM28-213ENST00000598355 IGFL2Q6UWQ7 119 aa15.22■□□□□ 0.03
TRIM28-213ENST00000598355 IGFL3Q6UXB1 125 aa15.22■□□□□ 0.03
TRIM28-213ENST00000598355 TDRPQ86YL5 185 aa15.22■□□□□ 0.03
TRIM28-213ENST00000598355 PLPP5Q8NEB5 264 aa15.22■□□□□ 0.03
TRIM28-213ENST00000598355 OR2L5Q8NG80 312 aa15.22■□□□□ 0.03
TRIM28-213ENST00000598355 ACMSDQ8TDX5 336 aa15.22■□□□□ 0.03
TRIM28-213ENST00000598355 ZNF473Q8WTR7 871 aaKnown RBP15.22■□□□□ 0.03
TRIM28-213ENST00000598355 MRPL57Q9BQC6 102 aaKnown RBP15.22■□□□□ 0.03
TRIM28-213ENST00000598355 C1QTNF3Q9BXJ4 246 aa15.22■□□□□ 0.03
TRIM28-213ENST00000598355 MS4A8Q9BY19 250 aa15.22■□□□□ 0.03
TRIM28-213ENST00000598355 PPCSQ9HAB8 311 aa15.22■□□□□ 0.03
TRIM28-213ENST00000598355 RIC8BQ9NVN3 520 aa15.22■□□□□ 0.03
TRIM28-213ENST00000598355 G3BP2Q9UN86 482 aaKnown RBP15.22■□□□□ 0.03
TRIM28-213ENST00000598355 HEMK1Q9Y5R4 338 aaPredicted RBP15.22■□□□□ 0.03
TRIM28-213ENST00000598355 IQANK1A0A1B0GTG1 560 aa15.21■□□□□ 0.03
TRIM28-213ENST00000598355 ANKDD1BA6NHY2 528 aa15.21■□□□□ 0.03
TRIM28-213ENST00000598355 ESPNB1AK53 854 aa15.21■□□□□ 0.03
TRIM28-213ENST00000598355 CHST10O43529 356 aa15.21■□□□□ 0.03
TRIM28-213ENST00000598355 SORBS2O94875 1100 aaKnown RBP15.21■□□□□ 0.03
TRIM28-213ENST00000598355 SCELO95171 688 aa15.21■□□□□ 0.03
TRIM28-213ENST00000598355 SIX3O95343 332 aaPredicted RBP15.21■□□□□ 0.03
TRIM28-213ENST00000598355 SHBGP04278 402 aa15.21■□□□□ 0.03
TRIM28-213ENST00000598355 FHP07954 510 aa15.21■□□□□ 0.03
TRIM28-213ENST00000598355 RPS17P08708 135 aaKnown RBP15.21■□□□□ 0.03
TRIM28-213ENST00000598355 C8orf89P0DMQ9 161 aa15.21■□□□□ 0.03
TRIM28-213ENST00000598355 SERPINB1P30740 379 aa15.21■□□□□ 0.03
TRIM28-213ENST00000598355 HPDP32754 393 aaPredicted RBP15.21■□□□□ 0.03
TRIM28-213ENST00000598355 HNF4AP41235 474 aa15.21■□□□□ 0.03
TRIM28-213ENST00000598355 PIK3CGP48736 1102 aa15.21■□□□□ 0.03
TRIM28-213ENST00000598355 RAB8AP61006 207 aa15.21■□□□□ 0.03
TRIM28-213ENST00000598355 VSNL1P62760 191 aa15.21■□□□□ 0.03
TRIM28-213ENST00000598355 LIPJQ5W064 366 aa15.21■□□□□ 0.03
TRIM28-213ENST00000598355 ATG14Q6ZNE5 492 aa15.21■□□□□ 0.03
TRIM28-213ENST00000598355 LANCL3Q6ZV70 420 aa15.21■□□□□ 0.03
TRIM28-213ENST00000598355 NDUFAF7Q7L592 441 aa15.21■□□□□ 0.03
TRIM28-213ENST00000598355 GOLGA7Q7Z5G4 137 aa15.21■□□□□ 0.03
TRIM28-213ENST00000598355 TEX9Q8N6V9 391 aa15.21■□□□□ 0.03
TRIM28-213ENST00000598355 PTGR2Q8N8N7 351 aaPredicted RBP15.21■□□□□ 0.03
TRIM28-213ENST00000598355 L3MBTL4Q8NA19 623 aa15.21■□□□□ 0.03
TRIM28-213ENST00000598355 OR7G3Q8NG95 312 aa15.21■□□□□ 0.03
TRIM28-213ENST00000598355 UBE2E3Q969T4 207 aa15.21■□□□□ 0.03
TRIM28-213ENST00000598355 TBC1D20Q96BZ9 403 aa15.21■□□□□ 0.03
TRIM28-213ENST00000598355 PEX11GQ96HA9 241 aa15.21■□□□□ 0.03
TRIM28-213ENST00000598355 IMMP1LQ96LU5 166 aa15.21■□□□□ 0.03
TRIM28-213ENST00000598355 WDR77Q9BQA1 342 aaPredicted RBP15.21■□□□□ 0.03
TRIM28-213ENST00000598355 YIPF2Q9BWQ6 316 aa15.21■□□□□ 0.03
TRIM28-213ENST00000598355 NPLQ9BXD5 320 aaPredicted RBP15.21■□□□□ 0.03
TRIM28-213ENST00000598355 EPN3Q9H201 632 aa15.21■□□□□ 0.03
TRIM28-213ENST00000598355 CPSF2Q9P2I0 782 aaKnown RBP15.21■□□□□ 0.03
TRIM28-213ENST00000598355 PCTPQ9UKL6 214 aa15.21■□□□□ 0.03
TRIM28-213ENST00000598355 UBR5O95071 2799 aaPredicted RBP15.21■□□□□ 0.03
TRIM28-213ENST00000598355 IGKV3D-11A0A0A0MRZ8 115 aa15.2■□□□□ 0.02
TRIM28-213ENST00000598355 NSG1A0A0A6YYJ2 146 aa15.2■□□□□ 0.02
TRIM28-213ENST00000598355 A6NL46 340 aa15.2■□□□□ 0.02
TRIM28-213ENST00000598355 MAGEB17A8MXT2 336 aa15.2■□□□□ 0.02
TRIM28-213ENST00000598355 H0YIV9 168 aa15.2■□□□□ 0.02
TRIM28-213ENST00000598355 ERI3O43414 337 aaKnown RBP15.2■□□□□ 0.02
TRIM28-213ENST00000598355 SLC28A2O43868 658 aa15.2■□□□□ 0.02
TRIM28-213ENST00000598355 DPM1O60762 260 aa15.2■□□□□ 0.02
TRIM28-213ENST00000598355 ALPPP05187 535 aa15.2■□□□□ 0.02
TRIM28-213ENST00000598355 OLR1P78380 273 aa15.2■□□□□ 0.02
TRIM28-213ENST00000598355 EEF1A2Q05639 463 aaKnown RBP15.2■□□□□ 0.02
TRIM28-213ENST00000598355 GTF2H2Q13888 395 aa15.2■□□□□ 0.02
TRIM28-213ENST00000598355 GTF2H2CQ6P1K8 395 aa15.2■□□□□ 0.02
TRIM28-213ENST00000598355 WDR93Q6P2C0 686 aa15.2■□□□□ 0.02
TRIM28-213ENST00000598355 MED27Q6P2C8 311 aa15.2■□□□□ 0.02
TRIM28-213ENST00000598355 ABHD17CQ6PCB6 329 aa15.2■□□□□ 0.02
TRIM28-213ENST00000598355 QSOX2Q6ZRP7 698 aa15.2■□□□□ 0.02
TRIM28-213ENST00000598355 RIPOR1Q6ZS17 1223 aa15.2■□□□□ 0.02
TRIM28-213ENST00000598355 SH2D5Q6ZV89 423 aa15.2■□□□□ 0.02
TRIM28-213ENST00000598355 CA13Q8N1Q1 262 aa15.2■□□□□ 0.02
TRIM28-213ENST00000598355 RBMXL3Q8N7X1 1067 aaKnown RBP15.2■□□□□ 0.02
TRIM28-213ENST00000598355 PSMF1Q92530 271 aa15.2■□□□□ 0.02
TRIM28-213ENST00000598355 REXO4Q9GZR2 422 aaKnown RBP15.2■□□□□ 0.02
TRIM28-213ENST00000598355 LHPPQ9H008 270 aa15.2■□□□□ 0.02
TRIM28-213ENST00000598355 ZNF160Q9HCG1 818 aa15.2■□□□□ 0.02
TRIM28-213ENST00000598355 ZBTB26Q9HCK0 441 aa15.2■□□□□ 0.02
TRIM28-213ENST00000598355 PPT2Q9UMR5 302 aa15.2■□□□□ 0.02
TRIM28-213ENST00000598355 TENM4Q6N022 2769 aa15.19■□□□□ 0.02
TRIM28-213ENST00000598355 A8MT66 165 aa15.19■□□□□ 0.02
TRIM28-213ENST00000598355 SLU7O95391 586 aaKnown RBP15.19■□□□□ 0.02
TRIM28-213ENST00000598355 PRR35P0CG20 571 aa15.19■□□□□ 0.02
TRIM28-213ENST00000598355 RNH1P13489 461 aaKnown RBP15.19■□□□□ 0.02
TRIM28-213ENST00000598355 JAK1P23458 1154 aa15.19■□□□□ 0.02
TRIM28-213ENST00000598355 ITGA3P26006 1051 aa15.19■□□□□ 0.02
TRIM28-213ENST00000598355 EEF1DP29692 281 aaKnown RBP15.19■□□□□ 0.02
TRIM28-213ENST00000598355 SOX11P35716 441 aa15.19■□□□□ 0.02
TRIM28-213ENST00000598355 PIK3CBP42338 1070 aa15.19■□□□□ 0.02
TRIM28-213ENST00000598355 CD97P48960 835 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms