RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	FOLH1	Q04609	750 aa		11.82	□□□□□ -0.52
SHMT2-223	ENST00000556689	CTBP1	Q13363	440 aa		11.82	□□□□□ -0.52
SHMT2-223	ENST00000556689	TPSAB1	Q15661	275 aa		11.82	□□□□□ -0.52
SHMT2-223	ENST00000556689	GXYLT1	Q4G148	440 aa		11.82	□□□□□ -0.52
SHMT2-223	ENST00000556689	AGTRAP	Q6RW13	159 aa		11.82	□□□□□ -0.52
SHMT2-223	ENST00000556689	LCTL	Q6UWM7	567 aa		11.82	□□□□□ -0.52
SHMT2-223	ENST00000556689	KIAA0408	Q6ZU52	694 aa		11.82	□□□□□ -0.52
SHMT2-223	ENST00000556689	PIWIL4	Q7Z3Z4	852 aa	Known RBP	11.82	□□□□□ -0.52
SHMT2-223	ENST00000556689	MDGA2	Q7Z553	956 aa		11.82	□□□□□ -0.52
SHMT2-223	ENST00000556689	DENND6A	Q8IWF6	608 aa		11.82	□□□□□ -0.52
SHMT2-223	ENST00000556689	PALM2	Q8IXS6	379 aa		11.82	□□□□□ -0.52
SHMT2-223	ENST00000556689	CYP4Z2P	Q8N1L4	340 aa		11.82	□□□□□ -0.52
SHMT2-223	ENST00000556689	RPRML	Q8N4K4	120 aa		11.82	□□□□□ -0.52
SHMT2-223	ENST00000556689	TBC1D19	Q8N5T2	526 aa		11.82	□□□□□ -0.52
SHMT2-223	ENST00000556689	RNF10	Q8N5U6	811 aa	Known RBP	11.82	□□□□□ -0.52
SHMT2-223	ENST00000556689	ARMC2	Q8NEN0	867 aa		11.82	□□□□□ -0.52
SHMT2-223	ENST00000556689	ABHD11	Q8NFV4	315 aa		11.82	□□□□□ -0.52
SHMT2-223	ENST00000556689	OR4K1	Q8NGD4	311 aa		11.82	□□□□□ -0.52
SHMT2-223	ENST00000556689	OR10Q1	Q8NGQ4	319 aa		11.82	□□□□□ -0.52
SHMT2-223	ENST00000556689	CD200R1	Q8TD46	325 aa		11.82	□□□□□ -0.52
SHMT2-223	ENST00000556689	NINJ1	Q92982	152 aa		11.82	□□□□□ -0.52
SHMT2-223	ENST00000556689	SEC16B	Q96JE7	1060 aa		11.82	□□□□□ -0.52
SHMT2-223	ENST00000556689	HAUS8	Q9BT25	410 aa		11.82	□□□□□ -0.52
SHMT2-223	ENST00000556689	SARG	Q9BW04	601 aa		11.82	□□□□□ -0.52
SHMT2-223	ENST00000556689	SGPP1	Q9BX95	441 aa		11.82	□□□□□ -0.52
SHMT2-223	ENST00000556689	CLK4	Q9HAZ1	481 aa	Known RBP	11.82	□□□□□ -0.52
SHMT2-223	ENST00000556689	PARVB	Q9HBI1	364 aa		11.82	□□□□□ -0.52
SHMT2-223	ENST00000556689	TIMMDC1	Q9NPL8	285 aa		11.82	□□□□□ -0.52
SHMT2-223	ENST00000556689	PRDM9	Q9NQV7	894 aa		11.82	□□□□□ -0.52
SHMT2-223	ENST00000556689	SAMD15	Q9P1V8	674 aa		11.82	□□□□□ -0.52
SHMT2-223	ENST00000556689	PDE10A	Q9Y233	779 aa		11.82	□□□□□ -0.52
SHMT2-223	ENST00000556689	PPP2R2C	Q9Y2T4	447 aa		11.82	□□□□□ -0.52
SHMT2-223	ENST00000556689	CAPN6	Q9Y6Q1	641 aa		11.82	□□□□□ -0.52
SHMT2-223	ENST00000556689	SCN3A	Q9NY46	2000 aa		11.81	□□□□□ -0.52
SHMT2-223	ENST00000556689	NIPBL	Q6KC79	2804 aa	eCLIP	11.81	□□□□□ -0.52
SHMT2-223	ENST00000556689	FAM237B	A0A1B0GVD1	139 aa		11.81	□□□□□ -0.52
SHMT2-223	ENST00000556689	TCRBV16S1A1N1	A0A5B0	115 aa		11.81	□□□□□ -0.52
SHMT2-223	ENST00000556689	PSMD12	O00232	456 aa	Predicted RBP	11.81	□□□□□ -0.52
SHMT2-223	ENST00000556689	ITGA10	O75578	1167 aa		11.81	□□□□□ -0.52
SHMT2-223	ENST00000556689	FAM155B	O75949	473 aa		11.81	□□□□□ -0.52
SHMT2-223	ENST00000556689	B3GALT4	O96024	378 aa		11.81	□□□□□ -0.52
SHMT2-223	ENST00000556689	SERPIND1	P05546	499 aa		11.81	□□□□□ -0.52
SHMT2-223	ENST00000556689	C8G	P07360	202 aa		11.81	□□□□□ -0.52
SHMT2-223	ENST00000556689	F7	P08709	466 aa	Predicted RBP	11.81	□□□□□ -0.52
SHMT2-223	ENST00000556689	KLK2	P20151	261 aa		11.81	□□□□□ -0.52
SHMT2-223	ENST00000556689	MAOA	P21397	527 aa		11.81	□□□□□ -0.52
SHMT2-223	ENST00000556689	CLCN2	P51788	898 aa		11.81	□□□□□ -0.52
SHMT2-223	ENST00000556689	RGS1	Q08116	209 aa		11.81	□□□□□ -0.52
SHMT2-223	ENST00000556689	SIX1	Q15475	284 aa	Predicted RBP	11.81	□□□□□ -0.52
SHMT2-223	ENST00000556689	EMC4	Q5J8M3	183 aa		11.81	□□□□□ -0.52
SHMT2-223	ENST00000556689	UGT3A1	Q6NUS8	523 aa		11.81	□□□□□ -0.52
SHMT2-223	ENST00000556689	ABHD13	Q7L211	337 aa		11.81	□□□□□ -0.52
SHMT2-223	ENST00000556689	STRA8	Q7Z7C7	330 aa		11.81	□□□□□ -0.52
SHMT2-223	ENST00000556689	MMP21	Q8N119	569 aa		11.81	□□□□□ -0.52
SHMT2-223	ENST00000556689	MYRIP	Q8NFW9	859 aa		11.81	□□□□□ -0.52
SHMT2-223	ENST00000556689	OR5M3	Q8NGP4	307 aa		11.81	□□□□□ -0.52
SHMT2-223	ENST00000556689	EEF1AKMT1	Q8WVE0	214 aa		11.81	□□□□□ -0.52
SHMT2-223	ENST00000556689	SNF8	Q96H20	258 aa		11.81	□□□□□ -0.52
SHMT2-223	ENST00000556689	SLC6A16	Q9GZN6	736 aa		11.81	□□□□□ -0.52
SHMT2-223	ENST00000556689	DNAJB12	Q9NXW2	375 aa	Known RBP	11.81	□□□□□ -0.52
SHMT2-223	ENST00000556689	ADAMTS6	Q9UKP5	1117 aa		11.81	□□□□□ -0.52
SHMT2-223	ENST00000556689	FBXW2	Q9UKT8	454 aa		11.81	□□□□□ -0.52
SHMT2-223	ENST00000556689	TRBV11-1	A0A0K0K1C0	115 aa		11.8	□□□□□ -0.52
SHMT2-223	ENST00000556689	TRBC2	A0A5B9	178 aa		11.8	□□□□□ -0.52
SHMT2-223	ENST00000556689	SDR42E2	A6NKP2	422 aa		11.8	□□□□□ -0.52
SHMT2-223	ENST00000556689	NPIPA2	E9PIF3	369 aa		11.8	□□□□□ -0.52
SHMT2-223	ENST00000556689	NPIPA3	F8WFD2	350 aa		11.8	□□□□□ -0.52
SHMT2-223	ENST00000556689	HAUS5	O94927	633 aa		11.8	□□□□□ -0.52
SHMT2-223	ENST00000556689	TUBB4A	P04350	444 aa		11.8	□□□□□ -0.52
SHMT2-223	ENST00000556689	HIST1H2AG	P0C0S8	130 aa	Predicted RBP	11.8	□□□□□ -0.52
SHMT2-223	ENST00000556689	ZNF888	P0CJ79	500 aa	Predicted RBP	11.8	□□□□□ -0.52
SHMT2-223	ENST00000556689	HIST1H2AD	P20671	130 aa		11.8	□□□□□ -0.52
SHMT2-223	ENST00000556689	KCNJ1	P48048	391 aa		11.8	□□□□□ -0.52
SHMT2-223	ENST00000556689	TERF1	P54274	439 aa		11.8	□□□□□ -0.52
SHMT2-223	ENST00000556689	PPIA	P62937	165 aa	Known RBP	11.8	□□□□□ -0.52
SHMT2-223	ENST00000556689	LRRC8E	Q6NSJ5	796 aa		11.8	□□□□□ -0.52
SHMT2-223	ENST00000556689	MBOAT1	Q6ZNC8	495 aa		11.8	□□□□□ -0.52
SHMT2-223	ENST00000556689	APCDD1L	Q8NCL9	501 aa		11.8	□□□□□ -0.52
SHMT2-223	ENST00000556689	B3GNT7	Q8NFL0	401 aa		11.8	□□□□□ -0.52
SHMT2-223	ENST00000556689	NT5C	Q8TCD5	201 aa		11.8	□□□□□ -0.52
SHMT2-223	ENST00000556689	CALML6	Q8TD86	181 aa		11.8	□□□□□ -0.52
SHMT2-223	ENST00000556689	UTP15	Q8TED0	518 aa	Known RBP	11.8	□□□□□ -0.52
SHMT2-223	ENST00000556689	ZNF669	Q96BR6	464 aa	Predicted RBP	11.8	□□□□□ -0.52
SHMT2-223	ENST00000556689	HIST1H2AH	Q96KK5	128 aa		11.8	□□□□□ -0.52
SHMT2-223	ENST00000556689	HIST1H2AJ	Q99878	128 aa		11.8	□□□□□ -0.52
SHMT2-223	ENST00000556689	AARSD1	Q9BTE6	412 aa	Known RBP	11.8	□□□□□ -0.52
SHMT2-223	ENST00000556689	H2AFJ	Q9BTM1	129 aa		11.8	□□□□□ -0.52
SHMT2-223	ENST00000556689	RHBG	Q9H310	441 aa		11.8	□□□□□ -0.52
SHMT2-223	ENST00000556689	NECTIN3	Q9NQS3	549 aa		11.8	□□□□□ -0.52
SHMT2-223	ENST00000556689	KCMF1	Q9P0J7	381 aa		11.8	□□□□□ -0.52
SHMT2-223	ENST00000556689	ZFAT	Q9P243	1243 aa		11.8	□□□□□ -0.52
SHMT2-223	ENST00000556689	TRMT6	Q9UJA5	497 aa	Known RBP	11.8	□□□□□ -0.52
SHMT2-223	ENST00000556689	EDAR	Q9UNE0	448 aa		11.8	□□□□□ -0.52
SHMT2-223	ENST00000556689	YARS2	Q9Y2Z4	477 aa	Known RBP	11.8	□□□□□ -0.52
SHMT2-223	ENST00000556689	ZNF469	Q96JG9	3925 aa	Predicted RBP	11.8	□□□□□ -0.52
SHMT2-223	ENST00000556689	SPG11	Q96JI7	2443 aa		11.79	□□□□□ -0.52
SHMT2-223	ENST00000556689	IGKV3D-11	A0A0A0MRZ8	115 aa		11.79	□□□□□ -0.52
SHMT2-223	ENST00000556689	URAD	A6NGE7	173 aa		11.79	□□□□□ -0.52
SHMT2-223	ENST00000556689	ACOT7	O00154	380 aa		11.79	□□□□□ -0.52
SHMT2-223	ENST00000556689	SLC16A5	O15375	505 aa		11.79	□□□□□ -0.52

Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms