RNA–Protein interactions for RNA: ENST00000555351.1

VRK1-204, Transcript of vaccinia related kinase 1, humanhuman

TSL 2

Gene VRK1, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-204ENST00000555351 TMEM79Q9BSE2 394 aa11.14□□□□□ -0.63
VRK1-204ENST00000555351 RHBGQ9H310 441 aa11.14□□□□□ -0.63
VRK1-204ENST00000555351 STMN3Q9NZ72 180 aa11.14□□□□□ -0.63
VRK1-204ENST00000555351 WWOXQ9NZC7 414 aa11.14□□□□□ -0.63
VRK1-204ENST00000555351 NUDT4Q9NZJ9 180 aa11.14□□□□□ -0.63
VRK1-204ENST00000555351 ABI3Q9P2A4 366 aa11.14□□□□□ -0.63
VRK1-204ENST00000555351 RNF112Q9ULX5 631 aa11.14□□□□□ -0.63
VRK1-204ENST00000555351 MMACHCQ9Y4U1 282 aa11.14□□□□□ -0.63
VRK1-204ENST00000555351 LRIT2A6NDA9 550 aa11.13□□□□□ -0.63
VRK1-204ENST00000555351 OR5H15A6NDH6 313 aa11.13□□□□□ -0.63
VRK1-204ENST00000555351 ANKDD1BA6NHY2 528 aa11.13□□□□□ -0.63
VRK1-204ENST00000555351 PSMD12O00232 456 aaPredicted RBP11.13□□□□□ -0.63
VRK1-204ENST00000555351 PRMT3O60678 531 aa11.13□□□□□ -0.63
VRK1-204ENST00000555351 KERAO60938 352 aa11.13□□□□□ -0.63
VRK1-204ENST00000555351 WDPCPO95876 746 aa11.13□□□□□ -0.63
VRK1-204ENST00000555351 UQCRHP07919 91 aa11.13□□□□□ -0.63
VRK1-204ENST00000555351 SERPINB1P30740 379 aa11.13□□□□□ -0.63
VRK1-204ENST00000555351 PHBP35232 272 aa11.13□□□□□ -0.63
VRK1-204ENST00000555351 GDF5P43026 501 aa11.13□□□□□ -0.63
VRK1-204ENST00000555351 OR4D2P58180 307 aa11.13□□□□□ -0.63
VRK1-204ENST00000555351 ACTN3Q08043 901 aaPredicted RBP11.13□□□□□ -0.63
VRK1-204ENST00000555351 MRPL49Q13405 166 aaKnown RBP11.13□□□□□ -0.63
VRK1-204ENST00000555351 RCN2Q14257 317 aa11.13□□□□□ -0.63
VRK1-204ENST00000555351 SLBPQ14493 270 aaKnown RBP eCLIP11.13□□□□□ -0.63
VRK1-204ENST00000555351 TERF2Q15554 542 aa11.13□□□□□ -0.63
VRK1-204ENST00000555351 PDK4Q16654 411 aa11.13□□□□□ -0.63
VRK1-204ENST00000555351 EIF2S3LQ2VIR3 472 aaKnown RBP11.13□□□□□ -0.63
VRK1-204ENST00000555351 GLE1Q53GS7 698 aaKnown RBP11.13□□□□□ -0.63
VRK1-204ENST00000555351 SFT2D3Q587I9 215 aa11.13□□□□□ -0.63
VRK1-204ENST00000555351 PAGE2BQ5JRK9 111 aa11.13□□□□□ -0.63
VRK1-204ENST00000555351 ACER2Q5QJU3 275 aa11.13□□□□□ -0.63
VRK1-204ENST00000555351 ZNF324BQ6AW86 544 aaPredicted RBP11.13□□□□□ -0.63
VRK1-204ENST00000555351 METTL2BQ6P1Q9 378 aaKnown RBP11.13□□□□□ -0.63
VRK1-204ENST00000555351 PAPD4Q6PIY7 484 aaKnown RBP11.13□□□□□ -0.63
VRK1-204ENST00000555351 ISCA2Q86U28 154 aa11.13□□□□□ -0.63
VRK1-204ENST00000555351 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.13□□□□□ -0.63
VRK1-204ENST00000555351 ARMC10Q8N2F6 343 aa11.13□□□□□ -0.63
VRK1-204ENST00000555351 MMGT1Q8N4V1 131 aa11.13□□□□□ -0.63
VRK1-204ENST00000555351 SLC5A8Q8N695 610 aa11.13□□□□□ -0.63
VRK1-204ENST00000555351 CATSPER1Q8NEC5 780 aa11.13□□□□□ -0.63
VRK1-204ENST00000555351 C7orf57Q8NEG2 295 aa11.13□□□□□ -0.63
VRK1-204ENST00000555351 MNS1Q8NEH6 495 aa11.13□□□□□ -0.63
VRK1-204ENST00000555351 ARMC2Q8NEN0 867 aa11.13□□□□□ -0.63
VRK1-204ENST00000555351 OR2L5Q8NG80 312 aa11.13□□□□□ -0.63
VRK1-204ENST00000555351 OR1N1Q8NGS0 311 aa11.13□□□□□ -0.63
VRK1-204ENST00000555351 RHEBL1Q8TAI7 183 aa11.13□□□□□ -0.63
VRK1-204ENST00000555351 SUN3Q8TAQ9 357 aa11.13□□□□□ -0.63
VRK1-204ENST00000555351 UBTD2Q8WUN7 234 aa11.13□□□□□ -0.63
VRK1-204ENST00000555351 UBE2E3Q969T4 207 aa11.13□□□□□ -0.63
VRK1-204ENST00000555351 MS4A6EQ96DS6 147 aa11.13□□□□□ -0.63
VRK1-204ENST00000555351 FAR2Q96K12 515 aa11.13□□□□□ -0.63
VRK1-204ENST00000555351 CNDP1Q96KN2 507 aa11.13□□□□□ -0.63
VRK1-204ENST00000555351 FUT8Q9BYC5 575 aa11.13□□□□□ -0.63
VRK1-204ENST00000555351 CD244Q9BZW8 370 aa11.13□□□□□ -0.63
VRK1-204ENST00000555351 PRDM9Q9NQV7 894 aa11.13□□□□□ -0.63
VRK1-204ENST00000555351 CD274Q9NZQ7 290 aa11.13□□□□□ -0.63
VRK1-204ENST00000555351 MTRF1LQ9UGC7 380 aaKnown RBP11.13□□□□□ -0.63
VRK1-204ENST00000555351 SLC5A6Q9Y289 635 aa11.13□□□□□ -0.63
VRK1-204ENST00000555351 ACOT9Q9Y305 439 aa11.13□□□□□ -0.63
VRK1-204ENST00000555351 USP9YO00507 2555 aaPredicted RBP11.13□□□□□ -0.63
VRK1-204ENST00000555351 A0A087X1B8 175 aa11.12□□□□□ -0.63
VRK1-204ENST00000555351 IGKV3D-11A0A0A0MRZ8 115 aa11.12□□□□□ -0.63
VRK1-204ENST00000555351 TCRBV16S1A1N1A0A5B0 115 aa11.12□□□□□ -0.63
VRK1-204ENST00000555351 ZNF860A6NHJ4 632 aa11.12□□□□□ -0.63
VRK1-204ENST00000555351 NCF1BA6NI72 391 aaPredicted RBP11.12□□□□□ -0.63
VRK1-204ENST00000555351 SYCE1LA8MT33 242 aa11.12□□□□□ -0.63
VRK1-204ENST00000555351 NCF1CA8MVU1 366 aaPredicted RBP11.12□□□□□ -0.63
VRK1-204ENST00000555351 KIF2AO00139 706 aaPredicted RBP11.12□□□□□ -0.63
VRK1-204ENST00000555351 E2F3O00716 465 aa11.12□□□□□ -0.63
VRK1-204ENST00000555351 PRAMEF2O60811 474 aa11.12□□□□□ -0.63
VRK1-204ENST00000555351 SEMA7AO75326 666 aa11.12□□□□□ -0.63
VRK1-204ENST00000555351 URI1O94763 535 aaPredicted RBP11.12□□□□□ -0.63
VRK1-204ENST00000555351 LTA4HP09960 611 aaKnown RBP11.12□□□□□ -0.63
VRK1-204ENST00000555351 NCF1P14598 390 aaPredicted RBP11.12□□□□□ -0.63
VRK1-204ENST00000555351 HSD17B7P56937 341 aa11.12□□□□□ -0.63
VRK1-204ENST00000555351 SLC26A5P58743 744 aa11.12□□□□□ -0.63
VRK1-204ENST00000555351 TAS2R50P59544 299 aa11.12□□□□□ -0.63
VRK1-204ENST00000555351 RAB8AP61006 207 aa11.12□□□□□ -0.63
VRK1-204ENST00000555351 ZNF33BQ06732 778 aa11.12□□□□□ -0.63
VRK1-204ENST00000555351 TGM3Q08188 693 aa11.12□□□□□ -0.63
VRK1-204ENST00000555351 TRADDQ15628 312 aa11.12□□□□□ -0.63
VRK1-204ENST00000555351 HIST2H2ACQ16777 129 aaPredicted RBP11.12□□□□□ -0.63
VRK1-204ENST00000555351 MEP1AQ16819 746 aa11.12□□□□□ -0.63
VRK1-204ENST00000555351 FAM83EQ2M2I3 478 aa11.12□□□□□ -0.63
VRK1-204ENST00000555351 TOR1AIP1Q5JTV8 583 aa11.12□□□□□ -0.63
VRK1-204ENST00000555351 HIST2H2AA3Q6FI13 130 aa11.12□□□□□ -0.63
VRK1-204ENST00000555351 RAPH1Q70E73 1250 aa11.12□□□□□ -0.63
VRK1-204ENST00000555351 SPATA6LQ8N4H0 392 aa11.12□□□□□ -0.63
VRK1-204ENST00000555351 SRFBP1Q8NEF9 429 aaKnown RBP11.12□□□□□ -0.63
VRK1-204ENST00000555351 PRR7Q8TB68 274 aa11.12□□□□□ -0.63
VRK1-204ENST00000555351 ELP5Q8TE02 316 aa11.12□□□□□ -0.63
VRK1-204ENST00000555351 C16orf45Q96MC5 204 aaPredicted RBP11.12□□□□□ -0.63
VRK1-204ENST00000555351 PTCHD1Q96NR3 888 aa11.12□□□□□ -0.63
VRK1-204ENST00000555351 ATOH8Q96SQ7 321 aa11.12□□□□□ -0.63
VRK1-204ENST00000555351 LRRC1Q9BTT6 524 aa11.12□□□□□ -0.63
VRK1-204ENST00000555351 ROGDIQ9GZN7 287 aa11.12□□□□□ -0.63
VRK1-204ENST00000555351 KLHL31Q9H511 634 aa11.12□□□□□ -0.63
VRK1-204ENST00000555351 KCNK13Q9HB14 408 aa11.12□□□□□ -0.63
VRK1-204ENST00000555351 ADGRE2Q9UHX3 823 aa11.12□□□□□ -0.63
VRK1-204ENST00000555351 MRPS33Q9Y291 106 aaKnown RBP11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms