RNA–Protein interactions for RNA: ENST00000538266.5

SNHG1-208, Transcript of small nucleolar RNA host gene 1, human

TSL 3 BASIC

Gene SNHG1, Length 347 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-208	ENST00000538266	CDH16	O75309	829 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	FAM155B	O75949	473 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	IPO13	O94829	963 aa	Known RBP	4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	EML2	O95834	649 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	C1QA	P02745	245 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	CAT	P04040	527 aa	Known RBP	4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	C8G	P07360	202 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	SNRPA	P09012	282 aa	Known RBP	4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	CDK4	P11802	303 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	CKMT1A	P12532	417 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	CEACAM1	P13688	526 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	ZNF20	P17024	532 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	ZNF37A	P17032	561 aa	Predicted RBP	4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	XRCC1	P18887	633 aa	Predicted RBP	4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	CSRP1	P21291	193 aa	Known RBP	4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	CD9	P21926	228 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	GABRB3	P28472	473 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	CRABP2	P29373	138 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	PDHA2	P29803	388 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	SLCO1A2	P46721	670 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	FASLG	P48023	281 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	SELENOP	P49908	381 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	NOVA1	P51513	510 aa	Known RBP	4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	KPNA2	P52292	529 aa	Known RBP	4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	TAS2R39	P59534	338 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	RAB10	P61026	200 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	SIM1	P81133	766 aa	Predicted RBP	4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	MGAT2	Q10469	447 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	ABR	Q12979	859 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	SP140	Q13342	867 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	BMPR2	Q13873	1038 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	CLCA4	Q14CN2	919 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	TRIP6	Q15654	476 aa	Known RBP	4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	RPE65	Q16518	533 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	ACSBG2	Q5FVE4	666 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	TNFAIP8L3	Q5GJ75	292 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	ARMC6	Q6NXE6	501 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	GUSBP11	Q6P575	273 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	KLC3	Q6P597	504 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	ABRAXAS1	Q6UWZ7	409 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	UNC5D	Q6UXZ4	953 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	NEK10	Q6ZWH5	1172 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	FRA10AC1	Q70Z53	315 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	EFL1	Q7Z2Z2	1120 aa	Known RBP	4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	APLF	Q8IW19	511 aa	Predicted RBP	4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	DCUN1D3	Q8IWE4	304 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	CPNE9	Q8IYJ1	553 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	TBC1D21	Q8IYX1	336 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	NAGS	Q8N159	534 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	MIER2	Q8N344	545 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	ARL14	Q8N4G2	192 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266		Q8N9G6	341 aa	Predicted RBP	4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	ACVR1C	Q8NER5	493 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	DEFB124	Q8NES8	71 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	OR10G6	Q8NH81	332 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	IFI44	Q8TCB0	444 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	LKAAEAR1	Q8TD35	194 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	CD200R1	Q8TD46	325 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	MCOLN3	Q8TDD5	553 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	EEF1AKMT1	Q8WVE0	214 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	LCN9	Q8WX39	176 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	PATE1	Q8WXA2	126 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	GRAMD1A	Q96CP6	724 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	KLHL29	Q96CT2	875 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	LINGO1	Q96FE5	620 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	CAMK1G	Q96NX5	476 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	OLFM1	Q99784	485 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	RTKN	Q9BST9	563 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	HGH1	Q9BTY7	390 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	RAB11FIP5	Q9BXF6	653 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	TRIM54	Q9BYV2	358 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	OR52A5	Q9H2C5	316 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	KIR3DX1	Q9H7L2	352 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	MVB12B	Q9H7P6	319 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	CAB39L	Q9H9S4	337 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	POPDC3	Q9HBV1	291 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	FGFR1OP2	Q9NVK5	253 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	NKIRAS1	Q9NYS0	192 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	LRIT1	Q9P2V4	623 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	TBK1	Q9UHD2	729 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	POLG2	Q9UHN1	485 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	LGALS13	Q9UHV8	139 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	SLC24A2	Q9UI40	661 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	LNPEP	Q9UIQ6	1025 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	WDR37	Q9Y2I8	494 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	TDRKH	Q9Y2W6	561 aa	Known RBP	4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	MED16	Q9Y2X0	877 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	MTO1	Q9Y2Z2	717 aa	Known RBP	4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	DHRS7	Q9Y394	339 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	TESMIN	Q9Y4I5	508 aa		4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	CFAP20	Q9Y6A4	193 aa	Known RBP	4.16	□□□□□ -1.74
SNHG1-208	ENST00000538266	KNL1	Q8NG31	2342 aa		4.15	□□□□□ -1.74
SNHG1-208	ENST00000538266		A0A096LPK6	155 aa		4.15	□□□□□ -1.75
SNHG1-208	ENST00000538266	TMEM120B	A0PK00	339 aa		4.15	□□□□□ -1.75
SNHG1-208	ENST00000538266	CCDC154	A6NI56	674 aa		4.15	□□□□□ -1.75
SNHG1-208	ENST00000538266	LILRA5	A6NI73	299 aa		4.15	□□□□□ -1.75
SNHG1-208	ENST00000538266	FAM171A2	A8MVW0	826 aa		4.15	□□□□□ -1.75
SNHG1-208	ENST00000538266	TCP11X1	B4DZS4	312 aa		4.15	□□□□□ -1.75
SNHG1-208	ENST00000538266	BTN3A1	O00481	513 aa		4.15	□□□□□ -1.75
SNHG1-208	ENST00000538266	ZBTB14	O43829	449 aa		4.15	□□□□□ -1.75

Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms