RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 SMUG1Q53HV7 270 aa12.69□□□□□ -0.38
TCOF1-213ENST00000514442 CST9Q5W186 159 aa12.69□□□□□ -0.38
TCOF1-213ENST00000514442 MRPL10Q7Z7H8 261 aaKnown RBP12.69□□□□□ -0.38
TCOF1-213ENST00000514442 VWA5B2Q8N398 1253 aa12.69□□□□□ -0.38
TCOF1-213ENST00000514442 SLC38A3Q99624 504 aa12.69□□□□□ -0.38
TCOF1-213ENST00000514442 MAN2B2Q9Y2E5 1009 aa12.69□□□□□ -0.38
TCOF1-213ENST00000514442 SOCS7O14512 581 aa12.69□□□□□ -0.38
TCOF1-213ENST00000514442 ARHGEF15O94989 841 aa12.69□□□□□ -0.38
TCOF1-213ENST00000514442 PTX3P26022 381 aaPredicted RBP12.69□□□□□ -0.38
TCOF1-213ENST00000514442 CDH12P55289 794 aa12.69□□□□□ -0.38
TCOF1-213ENST00000514442 EFR3AQ14156 821 aa12.69□□□□□ -0.38
TCOF1-213ENST00000514442 ZBTB6Q15916 424 aa12.69□□□□□ -0.38
TCOF1-213ENST00000514442 PTCHD3Q3KNS1 767 aa12.69□□□□□ -0.38
TCOF1-213ENST00000514442 COQ5Q5HYK3 327 aa12.69□□□□□ -0.38
TCOF1-213ENST00000514442 USP30Q70CQ3 517 aa12.69□□□□□ -0.38
TCOF1-213ENST00000514442 PRSS48Q7RTY5 328 aa12.69□□□□□ -0.38
TCOF1-213ENST00000514442 PARP16Q8N5Y8 322 aa12.69□□□□□ -0.38
TCOF1-213ENST00000514442 TMEM145Q8NBT3 493 aa12.69□□□□□ -0.38
TCOF1-213ENST00000514442 GLB1L3Q8NCI6 653 aaPredicted RBP12.69□□□□□ -0.38
TCOF1-213ENST00000514442 DNAJB8Q8NHS0 232 aa12.69□□□□□ -0.38
TCOF1-213ENST00000514442 ZNF671Q8TAW3 534 aa12.69□□□□□ -0.38
TCOF1-213ENST00000514442 FAM110BQ8TC76 370 aa12.69□□□□□ -0.38
TCOF1-213ENST00000514442 RELTQ969Z4 430 aa12.69□□□□□ -0.38
TCOF1-213ENST00000514442 IL12RB2Q99665 862 aa12.69□□□□□ -0.38
TCOF1-213ENST00000514442 SLC2A11Q9BYW1 496 aa12.69□□□□□ -0.38
TCOF1-213ENST00000514442 DERL2Q9GZP9 239 aa12.69□□□□□ -0.38
TCOF1-213ENST00000514442 ZBTB20Q9HC78 741 aaPredicted RBP12.69□□□□□ -0.38
TCOF1-213ENST00000514442 NKIRAS2Q9NYR9 191 aa12.69□□□□□ -0.38
TCOF1-213ENST00000514442 MEIOCA2RUB1 952 aa12.69□□□□□ -0.38
TCOF1-213ENST00000514442 RYKP34925 604 aa12.69□□□□□ -0.38
TCOF1-213ENST00000514442 ETV3P41162 512 aa12.69□□□□□ -0.38
TCOF1-213ENST00000514442 MAP2K3P46734 347 aa12.69□□□□□ -0.38
TCOF1-213ENST00000514442 OR3A3P47888 321 aa12.69□□□□□ -0.38
TCOF1-213ENST00000514442 NUDT6P53370 316 aa12.69□□□□□ -0.38
TCOF1-213ENST00000514442 RPL6Q02878 288 aaKnown RBP12.69□□□□□ -0.38
TCOF1-213ENST00000514442 EMX1Q04741 257 aaPredicted RBP12.69□□□□□ -0.38
TCOF1-213ENST00000514442 HEPACAMQ14CZ8 416 aa12.69□□□□□ -0.38
TCOF1-213ENST00000514442 PRAMEF14Q5SWL7 426 aa12.69□□□□□ -0.38
TCOF1-213ENST00000514442 PRAMEF13Q5VWM6 474 aa12.69□□□□□ -0.38
TCOF1-213ENST00000514442 ZNF367Q7RTV3 350 aa12.69□□□□□ -0.38
TCOF1-213ENST00000514442 LRRTM4Q86VH4 590 aa12.69□□□□□ -0.38
TCOF1-213ENST00000514442 SLC30A3Q99726 388 aa12.69□□□□□ -0.38
TCOF1-213ENST00000514442 SGIP1Q9BQI5 828 aa12.69□□□□□ -0.38
TCOF1-213ENST00000514442 POLR2J2Q9GZM3 115 aaKnown RBP12.69□□□□□ -0.38
TCOF1-213ENST00000514442 MRM3Q9HC36 420 aaKnown RBP12.69□□□□□ -0.38
TCOF1-213ENST00000514442 TM9SF3Q9HD45 589 aa12.69□□□□□ -0.38
TCOF1-213ENST00000514442 SPHK2Q9NRA0 654 aa12.69□□□□□ -0.38
TCOF1-213ENST00000514442 CTPS2Q9NRF8 586 aa12.69□□□□□ -0.38
TCOF1-213ENST00000514442 CMTM6Q9NX76 183 aa12.69□□□□□ -0.38
TCOF1-213ENST00000514442 SPO11Q9Y5K1 396 aa12.69□□□□□ -0.38
TCOF1-213ENST00000514442 AKAP11Q9UKA4 1901 aa12.69□□□□□ -0.38
TCOF1-213ENST00000514442 TOGARAM1Q9Y4F4 1720 aa12.69□□□□□ -0.38
TCOF1-213ENST00000514442 INMT-MINDY4F8WBC2 141 aa12.69□□□□□ -0.38
TCOF1-213ENST00000514442 H7C2Y5 167 aa12.69□□□□□ -0.38
TCOF1-213ENST00000514442 KIAA0513O60268 411 aa12.69□□□□□ -0.38
TCOF1-213ENST00000514442 KLHL18O94889 574 aa12.69□□□□□ -0.38
TCOF1-213ENST00000514442 STEAP3Q658P3 488 aa12.69□□□□□ -0.38
TCOF1-213ENST00000514442 SIGIRRQ6IA17 410 aa12.69□□□□□ -0.38
TCOF1-213ENST00000514442 ZNF730Q6ZMV8 503 aa12.69□□□□□ -0.38
TCOF1-213ENST00000514442 LYSMD2Q8IV50 215 aa12.69□□□□□ -0.38
TCOF1-213ENST00000514442 C1orf52Q8N6N3 182 aaKnown RBP12.69□□□□□ -0.38
TCOF1-213ENST00000514442 KDM1BQ8NB78 822 aa12.69□□□□□ -0.38
TCOF1-213ENST00000514442 TSTD1Q8NFU3 115 aa12.69□□□□□ -0.38
TCOF1-213ENST00000514442 OR5AK3PQ8NH89 298 aa12.69□□□□□ -0.38
TCOF1-213ENST00000514442 ZNF563Q8TA94 476 aa12.69□□□□□ -0.38
TCOF1-213ENST00000514442 TEFMQ96QE5 360 aaKnown RBP12.69□□□□□ -0.38
TCOF1-213ENST00000514442 PSKH2Q96QS6 385 aa12.69□□□□□ -0.38
TCOF1-213ENST00000514442 MARCH4Q9P2E8 410 aaPredicted RBP12.69□□□□□ -0.38
TCOF1-213ENST00000514442 HCSTQ9UBK5 93 aa12.69□□□□□ -0.38
TCOF1-213ENST00000514442 MRPS14O60783 128 aaKnown RBP12.68□□□□□ -0.38
TCOF1-213ENST00000514442 ZNF30P17039 623 aa12.68□□□□□ -0.38
TCOF1-213ENST00000514442 SCAPQ12770 1279 aa12.68□□□□□ -0.38
TCOF1-213ENST00000514442 ADGRD2Q7Z7M1 963 aa12.68□□□□□ -0.38
TCOF1-213ENST00000514442 THOC6Q86W42 341 aaKnown RBP12.68□□□□□ -0.38
TCOF1-213ENST00000514442 CHDHQ8NE62 594 aaPredicted RBP12.68□□□□□ -0.38
TCOF1-213ENST00000514442 KCTD7Q96MP8 289 aa12.68□□□□□ -0.38
TCOF1-213ENST00000514442 SAV1Q9H4B6 383 aaPredicted RBP12.68□□□□□ -0.38
TCOF1-213ENST00000514442 GPN1Q9HCN4 374 aaPredicted RBP12.68□□□□□ -0.38
TCOF1-213ENST00000514442 VPS29Q9UBQ0 182 aa12.68□□□□□ -0.38
TCOF1-213ENST00000514442 AASSQ9UDR5 926 aa12.68□□□□□ -0.38
TCOF1-213ENST00000514442 LCHNA4D1U4 455 aa12.68□□□□□ -0.38
TCOF1-213ENST00000514442 B4DGG1 531 aa12.68□□□□□ -0.38
TCOF1-213ENST00000514442 M0QZQ0 153 aa12.68□□□□□ -0.38
TCOF1-213ENST00000514442 CREG1O75629 220 aa12.68□□□□□ -0.38
TCOF1-213ENST00000514442 MATN4O95460 622 aa12.68□□□□□ -0.38
TCOF1-213ENST00000514442 GBAP04062 536 aa12.68□□□□□ -0.38
TCOF1-213ENST00000514442 IFNW1P05000 195 aa12.68□□□□□ -0.38
TCOF1-213ENST00000514442 HOXB2P14652 356 aa12.68□□□□□ -0.38
TCOF1-213ENST00000514442 GADD45AP24522 165 aa12.68□□□□□ -0.38
TCOF1-213ENST00000514442 ZNF81P51508 661 aa12.68□□□□□ -0.38
TCOF1-213ENST00000514442 CDK5R2Q13319 367 aa12.68□□□□□ -0.38
TCOF1-213ENST00000514442 INAVAQ3KP66 663 aa12.68□□□□□ -0.38
TCOF1-213ENST00000514442 ZNF678Q5SXM1 525 aa12.68□□□□□ -0.38
TCOF1-213ENST00000514442 OR4F3Q6IEY1 312 aa12.68□□□□□ -0.38
TCOF1-213ENST00000514442 PNPLA1Q8N8W4 532 aa12.68□□□□□ -0.38
TCOF1-213ENST00000514442 KIAA1191Q96A73 305 aa12.68□□□□□ -0.38
TCOF1-213ENST00000514442 ASPNQ9BXN1 380 aa12.68□□□□□ -0.38
TCOF1-213ENST00000514442 HOXD1Q9GZZ0 328 aa12.68□□□□□ -0.38
TCOF1-213ENST00000514442 TGM5O43548 720 aa12.68□□□□□ -0.38
TCOF1-213ENST00000514442 EEDO75530 441 aaKnown RBP12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms