RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 FRMD6Q96NE9 622 aa10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 NANOGQ9H9S0 305 aa10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 IL21Q9HBE4 155 aa10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 TIGARQ9NQ88 270 aa10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 NUDT4Q9NZJ9 180 aa10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 C5AR2Q9P296 337 aa10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 RIF1Q5UIP0 2472 aaKnown RBP10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 MROH6A6NGR9 719 aa10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 TPST2O60704 377 aa10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 MTRF1O75570 445 aaKnown RBP10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 POU2F1P14859 743 aa10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 HOXC13P31276 330 aa10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 CCR7P32248 378 aa10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 RFC2P35250 354 aa10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 RNF144AP50876 292 aaPredicted RBP10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 CNTN1Q12860 1018 aa10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 COX10Q12887 443 aa10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 PXDC1Q5TGL8 231 aa10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 ASTLQ6HA08 431 aaPredicted RBP10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 PARGQ86W56 976 aa10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 ZSWIM9Q86XI8 627 aa10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 SPARTQ8N0X7 666 aa10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 EXOSC8Q96B26 276 aaKnown RBP10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 BIRC7Q96CA5 298 aa10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 SCRN2Q96FV2 425 aa10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 MAGEB10Q96LZ2 347 aaPredicted RBP10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 C12orf66Q96MD2 445 aa10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 SNX18Q96RF0 628 aa10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 ZBP1Q9H171 429 aa10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 ARNT2Q9HBZ2 717 aa10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 ENPP5Q9UJA9 477 aa10.37□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 WASH4PA8MWX3 477 aa10.36□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 DFNA5O60443 496 aa10.36□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 SLC16A8O95907 504 aa10.36□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 RPS3P23396 243 aaKnown RBP eCLIP10.36□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 SPINT3P49223 89 aa10.36□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 RPS3AP61247 264 aaKnown RBP10.36□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 RHAGQ02094 409 aa10.36□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 CAMK2BQ13554 666 aa10.36□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 HID1Q8IV36 788 aa10.36□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 C1orf52Q8N6N3 182 aaKnown RBP10.36□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 NUS1Q96E22 293 aa10.36□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 SLC30A2Q9BRI3 323 aa10.36□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 AIFM2Q9BRQ8 373 aa10.36□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 YIPF4Q9BSR8 244 aa10.36□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 ANKHQ9HCJ1 492 aa10.36□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 ERVK13-1Q9NX77 482 aa10.36□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 DNAJB9Q9UBS3 223 aa10.36□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 ASXL3Q9C0F0 2248 aa10.36□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 MID1O15344 667 aa10.36□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 ERN1O75460 977 aaKnown RBP10.36□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 DNAJB5O75953 348 aa10.36□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 ARHGEF15O94989 841 aa10.36□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 B3GALT4O96024 378 aa10.36□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 APODP05090 189 aa10.36□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 IL6P05231 212 aa10.36□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 ALDOCP09972 364 aaKnown RBP10.36□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 ANK1P16157 1881 aa10.36□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 LGALS3BPQ08380 585 aa10.36□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 PDGFRLQ15198 375 aa10.36□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 SHHQ15465 462 aa10.36□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 STK11Q15831 433 aa10.36□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 CCSMST1Q4G0I0 132 aa10.36□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 SPATC1Q76KD6 591 aa10.36□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 CLEC14AQ86T13 490 aa10.36□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 NOXA1Q86UR1 476 aa10.36□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 BPHLQ86WA6 291 aaPredicted RBP10.36□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 ZNF761Q86XN6 746 aaPredicted RBP10.36□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 OR6Q1Q8NGQ2 317 aa10.36□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 RHOXF1Q8NHV9 184 aa10.36□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 CNIH3Q8TBE1 160 aa10.36□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 TP53INP1Q96A56 240 aa10.36□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 CHFRQ96EP1 664 aa10.36□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 TXNDC15Q96J42 360 aa10.36□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 UCK2Q9BZX2 261 aa10.36□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 RC3H2Q9HBD1 1191 aaKnown RBP10.36□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 FNIP2Q9P278 1114 aa10.36□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 ERVK-18Q9QC07 812 aa10.36□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 TAC3Q9UHF0 121 aa10.36□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 NUFIP1Q9UHK0 495 aaKnown RBP10.36□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 GSRP00390 522 aa10.36□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 DNAJB1P25685 340 aa10.36□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 ERP29P30040 261 aaKnown RBP10.36□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 MESP2Q0VG99 397 aa10.36□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 PAGE3Q5JUK9 113 aa10.36□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 TMEM240Q5SV17 173 aa10.36□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 TANGO2Q6ICL3 276 aa10.36□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 AGTRAPQ6RW13 159 aa10.36□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 RAB42Q8N4Z0 105 aa10.36□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 OR2A12Q8NGT7 310 aa10.36□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 DEDD2Q8WXF8 326 aa10.36□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 NXPE3Q969Y0 559 aa10.36□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 MED28Q9H204 178 aa10.36□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 LCTP09848 1927 aa10.36□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 K7ESM1 405 aa10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 OR1F1O43749 312 aa10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 MYL9P24844 172 aa10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 KIR3DL1P43629 444 aa10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 OR3A3P47888 321 aa10.35□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 ERVK-21P61565 698 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms