RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 RTCAO00442 366 aaKnown RBP16.34■□□□□ 0.21
LIME1-208ENST00000493265 EDF1O60869 148 aaKnown RBP16.34■□□□□ 0.21
LIME1-208ENST00000493265 ATP6AP2O75787 350 aa16.34■□□□□ 0.21
LIME1-208ENST00000493265 KIAA0754O94854 1291 aa16.34■□□□□ 0.21
LIME1-208ENST00000493265 ZNF28P17035 718 aa16.34■□□□□ 0.21
LIME1-208ENST00000493265 IL1RNP18510 177 aa16.34■□□□□ 0.21
LIME1-208ENST00000493265 RBMS1P29558 406 aaKnown RBP16.34■□□□□ 0.21
LIME1-208ENST00000493265 CSTF3Q12996 717 aaKnown RBP16.34■□□□□ 0.21
LIME1-208ENST00000493265 NDUFA9Q16795 377 aa16.34■□□□□ 0.21
LIME1-208ENST00000493265 FAM214AQ32MH5 1076 aa16.34■□□□□ 0.21
LIME1-208ENST00000493265 LARP7Q4G0J3 582 aaKnown RBP eCLIP16.34■□□□□ 0.21
LIME1-208ENST00000493265 C10orf62Q5T681 223 aaPredicted RBP16.34■□□□□ 0.21
LIME1-208ENST00000493265 TMEM164Q5U3C3 297 aa16.34■□□□□ 0.21
LIME1-208ENST00000493265 TMEM214Q6NUQ4 689 aaKnown RBP16.34■□□□□ 0.21
LIME1-208ENST00000493265 BPHLQ86WA6 291 aaPredicted RBP16.34■□□□□ 0.21
LIME1-208ENST00000493265 WDR75Q8IWA0 830 aaKnown RBP16.34■□□□□ 0.21
LIME1-208ENST00000493265 PIWIL2Q8TC59 973 aaKnown RBP16.34■□□□□ 0.21
LIME1-208ENST00000493265 UTP15Q8TED0 518 aaKnown RBP16.34■□□□□ 0.21
LIME1-208ENST00000493265 MS4A6EQ96DS6 147 aa16.34■□□□□ 0.21
LIME1-208ENST00000493265 C19orf60Q96EN9 201 aa16.34■□□□□ 0.21
LIME1-208ENST00000493265 SEC16BQ96JE7 1060 aa16.34■□□□□ 0.21
LIME1-208ENST00000493265 FAR2Q96K12 515 aa16.34■□□□□ 0.21
LIME1-208ENST00000493265 C10orf90Q96M02 699 aa16.34■□□□□ 0.21
LIME1-208ENST00000493265 UBL7Q96S82 380 aaPredicted RBP16.34■□□□□ 0.21
LIME1-208ENST00000493265 CENPKQ9BS16 269 aa16.34■□□□□ 0.21
LIME1-208ENST00000493265 MRPL1Q9BYD6 325 aaKnown RBP16.34■□□□□ 0.21
LIME1-208ENST00000493265 ULBP3Q9BZM4 244 aa16.34■□□□□ 0.21
LIME1-208ENST00000493265 CCDC134Q9H6E4 229 aa16.34■□□□□ 0.21
LIME1-208ENST00000493265 GIMAP2Q9UG22 337 aa16.34■□□□□ 0.21
LIME1-208ENST00000493265 TSC22D4Q9Y3Q8 395 aa16.34■□□□□ 0.21
LIME1-208ENST00000493265 A0A0A6YYC8 382 aaPredicted RBP16.33■□□□□ 0.2
LIME1-208ENST00000493265 FITM1A5D6W6 292 aa16.33■□□□□ 0.2
LIME1-208ENST00000493265 URADA6NGE7 173 aa16.33■□□□□ 0.2
LIME1-208ENST00000493265 ZNF860A6NHJ4 632 aa16.33■□□□□ 0.2
LIME1-208ENST00000493265 C9orf172C9J069 976 aa16.33■□□□□ 0.2
LIME1-208ENST00000493265 I3L1I5 382 aaPredicted RBP16.33■□□□□ 0.2
LIME1-208ENST00000493265 SLC28A1O00337 649 aa16.33■□□□□ 0.2
LIME1-208ENST00000493265 RGS14O43566 566 aa16.33■□□□□ 0.2
LIME1-208ENST00000493265 EIF2S3P41091 472 aaKnown RBP16.33■□□□□ 0.2
LIME1-208ENST00000493265 BTN3A2P78410 334 aa16.33■□□□□ 0.2
LIME1-208ENST00000493265 NR6A1Q15406 480 aa16.33■□□□□ 0.2
LIME1-208ENST00000493265 MUM1Q2TAK8 710 aa16.33■□□□□ 0.2
LIME1-208ENST00000493265 GALNTL6Q49A17 601 aa16.33■□□□□ 0.2
LIME1-208ENST00000493265 DEFB134Q4QY38 66 aa16.33■□□□□ 0.2
LIME1-208ENST00000493265 TMEM35AQ53FP2 167 aa16.33■□□□□ 0.2
LIME1-208ENST00000493265 DEPDC1Q5TB30 811 aa16.33■□□□□ 0.2
LIME1-208ENST00000493265 VWA5B1Q5TIE3 1220 aa16.33■□□□□ 0.2
LIME1-208ENST00000493265 TRIM40Q6P9F5 258 aa16.33■□□□□ 0.2
LIME1-208ENST00000493265 LRRC69Q6ZNQ3 347 aa16.33■□□□□ 0.2
LIME1-208ENST00000493265 ABHD13Q7L211 337 aa16.33■□□□□ 0.2
LIME1-208ENST00000493265 PRSS41Q7RTY9 318 aa16.33■□□□□ 0.2
LIME1-208ENST00000493265 KIRREL3Q8IZU9 778 aa16.33■□□□□ 0.2
LIME1-208ENST00000493265 GBP7Q8N8V2 638 aaPredicted RBP16.33■□□□□ 0.2
LIME1-208ENST00000493265 OR9A4Q8NGU2 314 aa16.33■□□□□ 0.2
LIME1-208ENST00000493265 OR2T11Q8NH01 316 aa16.33■□□□□ 0.2
LIME1-208ENST00000493265 GAL3ST3Q96A11 431 aa16.33■□□□□ 0.2
LIME1-208ENST00000493265 RGMAQ96B86 450 aa16.33■□□□□ 0.2
LIME1-208ENST00000493265 C3orf30Q96M34 536 aa16.33■□□□□ 0.2
LIME1-208ENST00000493265 DDA1Q9BW61 102 aa16.33■□□□□ 0.2
LIME1-208ENST00000493265 ASPSCR1Q9BZE9 553 aa16.33■□□□□ 0.2
LIME1-208ENST00000493265 FAM107BQ9H098 131 aa16.33■□□□□ 0.2
LIME1-208ENST00000493265 COPS7BQ9H9Q2 264 aaPredicted RBP16.33■□□□□ 0.2
LIME1-208ENST00000493265 BRF2Q9HAW0 419 aa16.33■□□□□ 0.2
LIME1-208ENST00000493265 ANKHQ9HCJ1 492 aa16.33■□□□□ 0.2
LIME1-208ENST00000493265 NPHS2Q9NP85 383 aa16.33■□□□□ 0.2
LIME1-208ENST00000493265 NMRK1Q9NWW6 199 aa16.33■□□□□ 0.2
LIME1-208ENST00000493265 FOXJ2Q9P0K8 574 aa16.33■□□□□ 0.2
LIME1-208ENST00000493265 VPS29Q9UBQ0 182 aa16.33■□□□□ 0.2
LIME1-208ENST00000493265 USH1CQ9Y6N9 552 aa16.33■□□□□ 0.2
LIME1-208ENST00000493265 MAU2Q9Y6X3 613 aa16.33■□□□□ 0.2
LIME1-208ENST00000493265 HELZ2Q9BYK8 2649 aaKnown RBP16.32■□□□□ 0.2
LIME1-208ENST00000493265 SETXQ7Z333 2677 aaKnown RBP16.32■□□□□ 0.2
LIME1-208ENST00000493265 GOLGA8QA0A0J9YX86 632 aa16.32■□□□□ 0.2
LIME1-208ENST00000493265 TEX51A0A1B0GUA7 166 aa16.32■□□□□ 0.2
LIME1-208ENST00000493265 GOLGA8OA6NCC3 632 aa16.32■□□□□ 0.2
LIME1-208ENST00000493265 GOLGA8NF8WBI6 632 aa16.32■□□□□ 0.2
LIME1-208ENST00000493265 SGK494L7N484 410 aa16.32■□□□□ 0.2
LIME1-208ENST00000493265 HDAC3O15379 428 aa16.32■□□□□ 0.2
LIME1-208ENST00000493265 HSD3B1P14060 373 aa16.32■□□□□ 0.2
LIME1-208ENST00000493265 ALOX12P18054 663 aa16.32■□□□□ 0.2
LIME1-208ENST00000493265 HSD3B2P26439 372 aa16.32■□□□□ 0.2
LIME1-208ENST00000493265 LSP1P33241 339 aa16.32■□□□□ 0.2
LIME1-208ENST00000493265 SSR2P43308 183 aa16.32■□□□□ 0.2
LIME1-208ENST00000493265 SEC24CP53992 1094 aa16.32■□□□□ 0.2
LIME1-208ENST00000493265 ARSFP54793 590 aa16.32■□□□□ 0.2
LIME1-208ENST00000493265 TGM3Q08188 693 aa16.32■□□□□ 0.2
LIME1-208ENST00000493265 SLC9A5Q14940 896 aa16.32■□□□□ 0.2
LIME1-208ENST00000493265 MANEAQ5SRI9 462 aa16.32■□□□□ 0.2
LIME1-208ENST00000493265 TRIM46Q7Z4K8 759 aa16.32■□□□□ 0.2
LIME1-208ENST00000493265 UBE3DQ7Z6J8 389 aa16.32■□□□□ 0.2
LIME1-208ENST00000493265 SLC38A9Q8NBW4 561 aa16.32■□□□□ 0.2
LIME1-208ENST00000493265 OR2L5Q8NG80 312 aa16.32■□□□□ 0.2
LIME1-208ENST00000493265 MMABQ96EY8 250 aaPredicted RBP16.32■□□□□ 0.2
LIME1-208ENST00000493265 RABEP2Q9H5N1 569 aa16.32■□□□□ 0.2
LIME1-208ENST00000493265 PFDN4Q9NQP4 134 aa16.32■□□□□ 0.2
LIME1-208ENST00000493265 VTI1BQ9UEU0 232 aa16.32■□□□□ 0.2
LIME1-208ENST00000493265 SRPK3Q9UPE1 567 aa16.32■□□□□ 0.2
LIME1-208ENST00000493265 NAALAD2Q9Y3Q0 740 aa16.32■□□□□ 0.2
LIME1-208ENST00000493265 PCDHB3Q9Y5E6 796 aa16.32■□□□□ 0.2
LIME1-208ENST00000493265 PCDHGA8Q9Y5G5 932 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms