RNA–Protein interactions for RNA: ENST00000490557.1

HMGB1P38-201, Transcript of high mobility group box 1 pseudogene 38, humanhuman

BASIC

Gene HMGB1P38, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P38-201ENST00000490557 CALCOCO2Q13137 446 aa4.11□□□□□ -1.75
HMGB1P38-201ENST00000490557 MPP7Q5T2T1 576 aa4.11□□□□□ -1.75
HMGB1P38-201ENST00000490557 CNSTQ6PJW8 725 aa4.11□□□□□ -1.75
HMGB1P38-201ENST00000490557 UNC45BQ8IWX7 931 aa4.11□□□□□ -1.75
HMGB1P38-201ENST00000490557 NHLRC2Q8NBF2 726 aa4.11□□□□□ -1.75
HMGB1P38-201ENST00000490557 AQP11Q8NBQ7 271 aa4.11□□□□□ -1.75
HMGB1P38-201ENST00000490557 GTF3AQ92664 365 aaKnown RBP4.11□□□□□ -1.75
HMGB1P38-201ENST00000490557 CASP10Q92851 521 aa4.11□□□□□ -1.75
HMGB1P38-201ENST00000490557 CNRIP1Q96F85 164 aaPredicted RBP4.11□□□□□ -1.75
HMGB1P38-201ENST00000490557 LGMNQ99538 433 aa4.11□□□□□ -1.75
HMGB1P38-201ENST00000490557 PKP2Q99959 881 aa4.11□□□□□ -1.75
HMGB1P38-201ENST00000490557 OVOL2Q9BRP0 275 aa4.11□□□□□ -1.75
HMGB1P38-201ENST00000490557 DNAI2Q9GZS0 605 aa4.11□□□□□ -1.75
HMGB1P38-201ENST00000490557 LSG1Q9H089 658 aaKnown RBP4.11□□□□□ -1.75
HMGB1P38-201ENST00000490557 GPN1Q9HCN4 374 aaPredicted RBP4.11□□□□□ -1.75
HMGB1P38-201ENST00000490557 RABL2BQ9UNT1 228 aa4.11□□□□□ -1.75
HMGB1P38-201ENST00000490557 CLSPNQ9HAW4 1339 aa4.11□□□□□ -1.75
HMGB1P38-201ENST00000490557 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP4.1□□□□□ -1.75
HMGB1P38-201ENST00000490557 C2orf92A0A1B0GVN3 265 aa4.1□□□□□ -1.75
HMGB1P38-201ENST00000490557 MEX3AA1L020 520 aaKnown RBP4.1□□□□□ -1.75
HMGB1P38-201ENST00000490557 MAGEB2O15479 319 aa4.1□□□□□ -1.75
HMGB1P38-201ENST00000490557 MT-ND2P03891 347 aa4.1□□□□□ -1.75
HMGB1P38-201ENST00000490557 OXTRP30559 389 aa4.1□□□□□ -1.75
HMGB1P38-201ENST00000490557 TIA1P31483 386 aaKnown RBP eCLIP4.1□□□□□ -1.75
HMGB1P38-201ENST00000490557 TDO2P48775 406 aa4.1□□□□□ -1.75
HMGB1P38-201ENST00000490557 AP1B1Q10567 949 aa4.1□□□□□ -1.75
HMGB1P38-201ENST00000490557 ZNF177Q13360 481 aaPredicted RBP4.1□□□□□ -1.75
HMGB1P38-201ENST00000490557 NFATC2Q13469 925 aa4.1□□□□□ -1.75
HMGB1P38-201ENST00000490557 RAPSNQ13702 412 aa4.1□□□□□ -1.75
HMGB1P38-201ENST00000490557 C15orf52Q6ZUT6 534 aaKnown RBP4.1□□□□□ -1.75
HMGB1P38-201ENST00000490557 COX8CQ7Z4L0 72 aa4.1□□□□□ -1.75
HMGB1P38-201ENST00000490557 MYPOPQ86VE0 399 aaPredicted RBP4.1□□□□□ -1.75
HMGB1P38-201ENST00000490557 ANKRD46Q86W74 232 aa4.1□□□□□ -1.75
HMGB1P38-201ENST00000490557 CCDC170Q8IYT3 715 aa4.1□□□□□ -1.75
HMGB1P38-201ENST00000490557 TMCO5AQ8N6Q1 288 aa4.1□□□□□ -1.75
HMGB1P38-201ENST00000490557 NAT8LQ8N9F0 302 aa4.1□□□□□ -1.75
HMGB1P38-201ENST00000490557 Q8NBF4 154 aa4.1□□□□□ -1.75
HMGB1P38-201ENST00000490557 MAPK1IP1LQ8NDC0 245 aa4.1□□□□□ -1.75
HMGB1P38-201ENST00000490557 OR52B6Q8NGF0 335 aa4.1□□□□□ -1.75
HMGB1P38-201ENST00000490557 N4BP2L2Q92802 583 aaPredicted RBP4.1□□□□□ -1.75
HMGB1P38-201ENST00000490557 CORO2AQ92828 525 aa4.1□□□□□ -1.75
HMGB1P38-201ENST00000490557 SLC45A3Q96JT2 553 aa4.1□□□□□ -1.75
HMGB1P38-201ENST00000490557 CCDC43Q96MW1 224 aaKnown RBP4.1□□□□□ -1.75
HMGB1P38-201ENST00000490557 FAM218AQ96MZ4 157 aa4.1□□□□□ -1.75
HMGB1P38-201ENST00000490557 C2orf40Q9H1Z8 148 aa4.1□□□□□ -1.75
HMGB1P38-201ENST00000490557 PANK3Q9H999 370 aa4.1□□□□□ -1.75
HMGB1P38-201ENST00000490557 VPS18Q9P253 973 aa4.1□□□□□ -1.75
HMGB1P38-201ENST00000490557 PAK5Q9P286 719 aa4.1□□□□□ -1.75
HMGB1P38-201ENST00000490557 DBF4Q9UBU7 674 aaPredicted RBP4.1□□□□□ -1.75
HMGB1P38-201ENST00000490557 XPO7Q9UIA9 1087 aaKnown RBP4.1□□□□□ -1.75
HMGB1P38-201ENST00000490557 NOCTQ9UK39 431 aaKnown RBP4.1□□□□□ -1.75
HMGB1P38-201ENST00000490557 SATB2Q9UPW6 733 aa4.1□□□□□ -1.75
HMGB1P38-201ENST00000490557 KLK4Q9Y5K2 254 aa4.1□□□□□ -1.75
HMGB1P38-201ENST00000490557 ARID2Q68CP9 1835 aa4.09□□□□□ -1.75
HMGB1P38-201ENST00000490557 NPIPB9F8W1W9 429 aa4.09□□□□□ -1.75
HMGB1P38-201ENST00000490557 SOCS3O14543 225 aa4.09□□□□□ -1.75
HMGB1P38-201ENST00000490557 CTDSPLO15194 276 aa4.09□□□□□ -1.75
HMGB1P38-201ENST00000490557 SLC7A4O43246 635 aa4.09□□□□□ -1.75
HMGB1P38-201ENST00000490557 MTRF1O75570 445 aaKnown RBP4.09□□□□□ -1.75
HMGB1P38-201ENST00000490557 GOSR1O95249 250 aa4.09□□□□□ -1.75
HMGB1P38-201ENST00000490557 C4BPBP20851 252 aa4.09□□□□□ -1.75
HMGB1P38-201ENST00000490557 GPR183P32249 361 aa4.09□□□□□ -1.75
HMGB1P38-201ENST00000490557 CAPGP40121 348 aa4.09□□□□□ -1.75
HMGB1P38-201ENST00000490557 SLC1A3P43003 542 aa4.09□□□□□ -1.75
HMGB1P38-201ENST00000490557 SLC1A5Q15758 541 aa4.09□□□□□ -1.75
HMGB1P38-201ENST00000490557 ARMCX4Q5H9R4 360 aa4.09□□□□□ -1.75
HMGB1P38-201ENST00000490557 NHSL2Q5HYW2 709 aa4.09□□□□□ -1.75
HMGB1P38-201ENST00000490557 TATDN1Q6P1N9 297 aa4.09□□□□□ -1.75
HMGB1P38-201ENST00000490557 MCM10Q7L590 875 aa4.09□□□□□ -1.75
HMGB1P38-201ENST00000490557 TRMT11Q7Z4G4 463 aaKnown RBP4.09□□□□□ -1.75
HMGB1P38-201ENST00000490557 GLRX5Q86SX6 157 aa4.09□□□□□ -1.75
HMGB1P38-201ENST00000490557 SLC22A15Q8IZD6 547 aa4.09□□□□□ -1.75
HMGB1P38-201ENST00000490557 ATAD1Q8NBU5 361 aa4.09□□□□□ -1.75
HMGB1P38-201ENST00000490557 KIAA0895Q8NCT3 520 aa4.09□□□□□ -1.75
HMGB1P38-201ENST00000490557 OR10G7Q8NGN6 311 aa4.09□□□□□ -1.75
HMGB1P38-201ENST00000490557 MR1Q95460 341 aa4.09□□□□□ -1.75
HMGB1P38-201ENST00000490557 SGF29Q96ES7 293 aa4.09□□□□□ -1.75
HMGB1P38-201ENST00000490557 WBP1Q96G27 269 aa4.09□□□□□ -1.75
HMGB1P38-201ENST00000490557 PRICKLE1Q96MT3 831 aaPredicted RBP4.09□□□□□ -1.75
HMGB1P38-201ENST00000490557 ATOH8Q96SQ7 321 aa4.09□□□□□ -1.75
HMGB1P38-201ENST00000490557 PARK7Q99497 189 aaKnown RBP4.09□□□□□ -1.75
HMGB1P38-201ENST00000490557 CDH7Q9ULB5 785 aa4.09□□□□□ -1.75
HMGB1P38-201ENST00000490557 PCDHGA1Q9Y5H4 931 aa4.09□□□□□ -1.75
HMGB1P38-201ENST00000490557 ZHX2Q9Y6X8 837 aa4.09□□□□□ -1.75
HMGB1P38-201ENST00000490557 A0A0B4J203 849 aa4.08□□□□□ -1.76
HMGB1P38-201ENST00000490557 IGKV3D-20A0A0C4DH25 116 aa4.08□□□□□ -1.76
HMGB1P38-201ENST00000490557 ILVBLA1L0T0 632 aa4.08□□□□□ -1.76
HMGB1P38-201ENST00000490557 OOEPA6NGQ2 149 aa4.08□□□□□ -1.76
HMGB1P38-201ENST00000490557 K7EQD1 137 aa4.08□□□□□ -1.76
HMGB1P38-201ENST00000490557 SLC30A4O14863 429 aa4.08□□□□□ -1.76
HMGB1P38-201ENST00000490557 ST8SIA3O43173 380 aa4.08□□□□□ -1.76
HMGB1P38-201ENST00000490557 STX6O43752 255 aa4.08□□□□□ -1.76
HMGB1P38-201ENST00000490557 RAD51DO75771 328 aa4.08□□□□□ -1.76
HMGB1P38-201ENST00000490557 GRAP2O75791 330 aa4.08□□□□□ -1.76
HMGB1P38-201ENST00000490557 DLATP10515 647 aaKnown RBP4.08□□□□□ -1.76
HMGB1P38-201ENST00000490557 CCND3P30281 292 aaPredicted RBP4.08□□□□□ -1.76
HMGB1P38-201ENST00000490557 HSD17B7P56937 341 aa4.08□□□□□ -1.76
HMGB1P38-201ENST00000490557 EVCP57679 992 aa4.08□□□□□ -1.76
HMGB1P38-201ENST00000490557 ERVK-16P61578 105 aa4.08□□□□□ -1.76
HMGB1P38-201ENST00000490557 GRB14Q14449 540 aa4.08□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms