RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 YIPF2Q9BWQ6 316 aa9.62□□□□□ -0.87
CD44-207ENST00000425428 FAIM2Q9BWQ8 316 aa9.62□□□□□ -0.87
CD44-207ENST00000425428 TMEM120AQ9BXJ8 343 aa9.62□□□□□ -0.87
CD44-207ENST00000425428 ACPTQ9BZG2 426 aa9.62□□□□□ -0.87
CD44-207ENST00000425428 SLC6A16Q9GZN6 736 aa9.62□□□□□ -0.87
CD44-207ENST00000425428 RABEP2Q9H5N1 569 aa9.62□□□□□ -0.87
CD44-207ENST00000425428 ACTR5Q9H9F9 607 aaPredicted RBP9.62□□□□□ -0.87
CD44-207ENST00000425428 CLK4Q9HAZ1 481 aaKnown RBP9.62□□□□□ -0.87
CD44-207ENST00000425428 CUTCQ9NTM9 273 aa9.62□□□□□ -0.87
CD44-207ENST00000425428 TOR4AQ9NXH8 423 aa9.62□□□□□ -0.87
CD44-207ENST00000425428 ADAM29Q9UKF5 820 aa9.62□□□□□ -0.87
CD44-207ENST00000425428 MRPS33Q9Y291 106 aaKnown RBP9.62□□□□□ -0.87
CD44-207ENST00000425428 WBP11Q9Y2W2 641 aaKnown RBP9.62□□□□□ -0.87
CD44-207ENST00000425428 CNOT1A5YKK6 2376 aaKnown RBP9.62□□□□□ -0.87
CD44-207ENST00000425428 SAP18O00422 153 aaKnown RBP9.61□□□□□ -0.87
CD44-207ENST00000425428 PRAMEF10O60809 474 aa9.61□□□□□ -0.87
CD44-207ENST00000425428 CPNE3O75131 537 aaKnown RBP9.61□□□□□ -0.87
CD44-207ENST00000425428 CD63P08962 238 aa9.61□□□□□ -0.87
CD44-207ENST00000425428 CCNYL3P0C7X3 344 aa9.61□□□□□ -0.87
CD44-207ENST00000425428 ZNF888P0CJ79 500 aaPredicted RBP9.61□□□□□ -0.87
CD44-207ENST00000425428 FGF5P12034 268 aa9.61□□□□□ -0.87
CD44-207ENST00000425428 IDO1P14902 403 aa9.61□□□□□ -0.87
CD44-207ENST00000425428 ALOX15P16050 662 aaPredicted RBP9.61□□□□□ -0.87
CD44-207ENST00000425428 NCF2P19878 526 aaPredicted RBP9.61□□□□□ -0.87
CD44-207ENST00000425428 PRPH2P23942 346 aa9.61□□□□□ -0.87
CD44-207ENST00000425428 EPHA3P29320 983 aa9.61□□□□□ -0.87
CD44-207ENST00000425428 HTR6P50406 440 aa9.61□□□□□ -0.87
CD44-207ENST00000425428 MAPK12P53778 367 aa9.61□□□□□ -0.87
CD44-207ENST00000425428 BTN3A2P78410 334 aa9.61□□□□□ -0.87
CD44-207ENST00000425428 TARDBPQ13148 414 aaKnown RBP eCLIP9.61□□□□□ -0.87
CD44-207ENST00000425428 C16orf72Q14CZ0 275 aa9.61□□□□□ -0.87
CD44-207ENST00000425428 HKDC1Q2TB90 917 aa9.61□□□□□ -0.87
CD44-207ENST00000425428 C3orf38Q5JPI3 329 aa9.61□□□□□ -0.87
CD44-207ENST00000425428 METTL21CQ5VZV1 264 aa9.61□□□□□ -0.87
CD44-207ENST00000425428 TTLL10Q6ZVT0 673 aa9.61□□□□□ -0.87
CD44-207ENST00000425428 VN1R4Q7Z5H5 301 aa9.61□□□□□ -0.87
CD44-207ENST00000425428 ZFAND4Q86XD8 727 aa9.61□□□□□ -0.87
CD44-207ENST00000425428 C7orf57Q8NEG2 295 aa9.61□□□□□ -0.87
CD44-207ENST00000425428 OR1L3Q8NH93 324 aa9.61□□□□□ -0.87
CD44-207ENST00000425428 PROKR1Q8TCW9 393 aa9.61□□□□□ -0.87
CD44-207ENST00000425428 ADAMTS18Q8TE60 1221 aa9.61□□□□□ -0.87
CD44-207ENST00000425428 COL26A1Q96A83 441 aa9.61□□□□□ -0.87
CD44-207ENST00000425428 MS4A6EQ96DS6 147 aa9.61□□□□□ -0.87
CD44-207ENST00000425428 PRPF18Q99633 342 aaKnown RBP9.61□□□□□ -0.87
CD44-207ENST00000425428 DPH2Q9BQC3 489 aaPredicted RBP9.61□□□□□ -0.87
CD44-207ENST00000425428 DDA1Q9BW61 102 aa9.61□□□□□ -0.87
CD44-207ENST00000425428 NPLQ9BXD5 320 aaPredicted RBP9.61□□□□□ -0.87
CD44-207ENST00000425428 SPRTNQ9H040 489 aaPredicted RBP9.61□□□□□ -0.87
CD44-207ENST00000425428 AKTIPQ9H8T0 292 aa9.61□□□□□ -0.87
CD44-207ENST00000425428 STARD5Q9NSY2 213 aa9.61□□□□□ -0.87
CD44-207ENST00000425428 OCIAD1Q9NX40 245 aa9.61□□□□□ -0.87
CD44-207ENST00000425428 LYARQ9NX58 379 aaKnown RBP9.61□□□□□ -0.87
CD44-207ENST00000425428 MS4A12Q9NXJ0 267 aa9.61□□□□□ -0.87
CD44-207ENST00000425428 PISDQ9UG56 409 aa9.61□□□□□ -0.87
CD44-207ENST00000425428 GPN3Q9UHW5 284 aaPredicted RBP9.61□□□□□ -0.87
CD44-207ENST00000425428 PHF11Q9UIL8 331 aa9.61□□□□□ -0.87
CD44-207ENST00000425428 ARL2BPQ9Y2Y0 163 aa9.61□□□□□ -0.87
CD44-207ENST00000425428 PCDHB3Q9Y5E6 796 aa9.61□□□□□ -0.87
CD44-207ENST00000425428 CROCCQ5TZA2 2017 aa9.61□□□□□ -0.87
CD44-207ENST00000425428 WDR87Q6ZQQ6 2873 aa9.61□□□□□ -0.87
CD44-207ENST00000425428 SPTBP11277 2137 aa9.61□□□□□ -0.87
CD44-207ENST00000425428 ZNF292O60281 2723 aa9.61□□□□□ -0.87
CD44-207ENST00000425428 A0A1B0GX78 115 aa9.6□□□□□ -0.87
CD44-207ENST00000425428 DCDC2BA2VCK2 349 aa9.6□□□□□ -0.87
CD44-207ENST00000425428 FITM1A5D6W6 292 aa9.6□□□□□ -0.87
CD44-207ENST00000425428 H0YIG0 161 aa9.6□□□□□ -0.87
CD44-207ENST00000425428 DSCR3O14972 297 aa9.6□□□□□ -0.87
CD44-207ENST00000425428 ZNF749O43361 778 aa9.6□□□□□ -0.87
CD44-207ENST00000425428 PCDH7O60245 1069 aa9.6□□□□□ -0.87
CD44-207ENST00000425428 DCTN3O75935 186 aa9.6□□□□□ -0.87
CD44-207ENST00000425428 STATHP02808 62 aa9.6□□□□□ -0.87
CD44-207ENST00000425428 KLK1P06870 262 aa9.6□□□□□ -0.87
CD44-207ENST00000425428 ANXA4P09525 319 aaPredicted RBP9.6□□□□□ -0.87
CD44-207ENST00000425428 ACPPP15309 386 aa9.6□□□□□ -0.87
CD44-207ENST00000425428 DRD4P21917 467 aa9.6□□□□□ -0.87
CD44-207ENST00000425428 BUD31P41223 144 aaPredicted RBP9.6□□□□□ -0.87
CD44-207ENST00000425428 IDH3AP50213 366 aa9.6□□□□□ -0.87
CD44-207ENST00000425428 RAB8AP61006 207 aa9.6□□□□□ -0.87
CD44-207ENST00000425428 CBX1P83916 185 aa9.6□□□□□ -0.87
CD44-207ENST00000425428 EMX2Q04743 252 aa9.6□□□□□ -0.87
CD44-207ENST00000425428 ABHD18Q0P651 414 aa9.6□□□□□ -0.87
CD44-207ENST00000425428 GSTA3Q16772 222 aa9.6□□□□□ -0.87
CD44-207ENST00000425428 DEFB134Q4QY38 66 aa9.6□□□□□ -0.87
CD44-207ENST00000425428 XKR7Q5GH72 579 aa9.6□□□□□ -0.87
CD44-207ENST00000425428 TMEM214Q6NUQ4 689 aaKnown RBP9.6□□□□□ -0.87
CD44-207ENST00000425428 CACNA2D3Q8IZS8 1091 aa9.6□□□□□ -0.87
CD44-207ENST00000425428 METTL4Q8N3J2 472 aa9.6□□□□□ -0.87
CD44-207ENST00000425428 C1orf52Q8N6N3 182 aaKnown RBP9.6□□□□□ -0.87
CD44-207ENST00000425428 KCT2Q8NC54 265 aa9.6□□□□□ -0.87
CD44-207ENST00000425428 CCDC197Q8NCU1 140 aa9.6□□□□□ -0.87
CD44-207ENST00000425428 CDC26Q8NHZ8 85 aa9.6□□□□□ -0.87
CD44-207ENST00000425428 UTP15Q8TED0 518 aaKnown RBP9.6□□□□□ -0.87
CD44-207ENST00000425428 MMABQ96EY8 250 aaPredicted RBP9.6□□□□□ -0.87
CD44-207ENST00000425428 MRPL1Q9BYD6 325 aaKnown RBP9.6□□□□□ -0.87
CD44-207ENST00000425428 ULBP3Q9BZM4 244 aa9.6□□□□□ -0.87
CD44-207ENST00000425428 TNFRSF12AQ9NP84 129 aa9.6□□□□□ -0.87
CD44-207ENST00000425428 MCM8Q9UJA3 840 aa9.6□□□□□ -0.87
CD44-207ENST00000425428 PSME2Q9UL46 239 aa9.6□□□□□ -0.87
CD44-207ENST00000425428 KIF26BQ2KJY2 2108 aa9.6□□□□□ -0.87
CD44-207ENST00000425428 BLACEA4D250 179 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms