RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 RNF6Q9Y252 685 aa7.57□□□□□ -1.2
VIM-202ENST00000421459 VPS9D1Q9Y2B5 631 aa7.57□□□□□ -1.2
VIM-202ENST00000421459 F8P00451 2351 aa7.57□□□□□ -1.2
VIM-202ENST00000421459 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.56□□□□□ -1.2
VIM-202ENST00000421459 IGKV3D-11A0A0A0MRZ8 115 aa7.56□□□□□ -1.2
VIM-202ENST00000421459 A0A0G2JMM0 328 aa7.56□□□□□ -1.2
VIM-202ENST00000421459 TRBV11-1A0A0K0K1C0 115 aa7.56□□□□□ -1.2
VIM-202ENST00000421459 A0A1W2PPB8 328 aa7.56□□□□□ -1.2
VIM-202ENST00000421459 A0A1W2PRS3 328 aa7.56□□□□□ -1.2
VIM-202ENST00000421459 TCRBV16S1A1N1A0A5B0 115 aa7.56□□□□□ -1.2
VIM-202ENST00000421459 MAGEB16A2A368 324 aa7.56□□□□□ -1.2
VIM-202ENST00000421459 SAGE2PA6NJ88 616 aa7.56□□□□□ -1.2
VIM-202ENST00000421459 FAM166BA8MTA8 275 aa7.56□□□□□ -1.2
VIM-202ENST00000421459 KIR3DP1A8MWS1 328 aa7.56□□□□□ -1.2
VIM-202ENST00000421459 MYO1DO94832 1006 aa7.56□□□□□ -1.2
VIM-202ENST00000421459 TOXO94900 526 aa7.56□□□□□ -1.2
VIM-202ENST00000421459 AHSGP02765 367 aa7.56□□□□□ -1.2
VIM-202ENST00000421459 C8GP07360 202 aa7.56□□□□□ -1.2
VIM-202ENST00000421459 CAPN3P20807 821 aa7.56□□□□□ -1.2
VIM-202ENST00000421459 TRHRP34981 398 aaPredicted RBP7.56□□□□□ -1.2
VIM-202ENST00000421459 GRK3P35626 688 aa7.56□□□□□ -1.2
VIM-202ENST00000421459 MAGEA3P43357 314 aa7.56□□□□□ -1.2
VIM-202ENST00000421459 SCTRP47872 440 aa7.56□□□□□ -1.2
VIM-202ENST00000421459 CCR8P51685 355 aa7.56□□□□□ -1.2
VIM-202ENST00000421459 HNRNPFP52597 415 aaKnown RBP7.56□□□□□ -1.2
VIM-202ENST00000421459 SARNPP82979 210 aaKnown RBP7.56□□□□□ -1.2
VIM-202ENST00000421459 PMPCAQ10713 525 aa7.56□□□□□ -1.2
VIM-202ENST00000421459 C18orf21Q32NC0 220 aaPredicted RBP7.56□□□□□ -1.2
VIM-202ENST00000421459 XKR6Q5GH73 641 aa7.56□□□□□ -1.2
VIM-202ENST00000421459 HP1BP3Q5SSJ5 553 aaPredicted RBP7.56□□□□□ -1.2
VIM-202ENST00000421459 IGDCC3Q8IVU1 814 aa7.56□□□□□ -1.2
VIM-202ENST00000421459 CA13Q8N1Q1 262 aa7.56□□□□□ -1.2
VIM-202ENST00000421459 MYO1HQ8N1T3 1032 aa7.56□□□□□ -1.2
VIM-202ENST00000421459 NAT8LQ8N9F0 302 aa7.56□□□□□ -1.2
VIM-202ENST00000421459 APCDD1LQ8NCL9 501 aa7.56□□□□□ -1.2
VIM-202ENST00000421459 C2CD4AQ8NCU7 369 aaPredicted RBP7.56□□□□□ -1.2
VIM-202ENST00000421459 ABHD11Q8NFV4 315 aa7.56□□□□□ -1.2
VIM-202ENST00000421459 OR5M9Q8NGP3 310 aa7.56□□□□□ -1.2
VIM-202ENST00000421459 OR56A3Q8NH54 315 aa7.56□□□□□ -1.2
VIM-202ENST00000421459 NT5CQ8TCD5 201 aa7.56□□□□□ -1.2
VIM-202ENST00000421459 NEIL2Q969S2 332 aa7.56□□□□□ -1.2
VIM-202ENST00000421459 MAGOHBQ96A72 148 aaKnown RBP7.56□□□□□ -1.2
VIM-202ENST00000421459 TMEM125Q96AQ2 219 aa7.56□□□□□ -1.2
VIM-202ENST00000421459 DEFB126Q9BYW3 111 aa7.56□□□□□ -1.2
VIM-202ENST00000421459 PCBD2Q9H0N5 130 aa7.56□□□□□ -1.2
VIM-202ENST00000421459 LIME1Q9H400 295 aa7.56□□□□□ -1.2
VIM-202ENST00000421459 TRIM45Q9H8W5 580 aaPredicted RBP7.56□□□□□ -1.2
VIM-202ENST00000421459 PNO1Q9NRX1 252 aaKnown RBP7.56□□□□□ -1.2
VIM-202ENST00000421459 ARL15Q9NXU5 204 aa7.56□□□□□ -1.2
VIM-202ENST00000421459 COQ3Q9NZJ6 369 aa7.56□□□□□ -1.2
VIM-202ENST00000421459 KCMF1Q9P0J7 381 aa7.56□□□□□ -1.2
VIM-202ENST00000421459 FBXW2Q9UKT8 454 aa7.56□□□□□ -1.2
VIM-202ENST00000421459 ZKSCAN5Q9Y2L8 839 aa7.56□□□□□ -1.2
VIM-202ENST00000421459 SETD2Q9BYW2 2564 aaPredicted RBP7.56□□□□□ -1.2
VIM-202ENST00000421459 SCN3AQ9NY46 2000 aa7.56□□□□□ -1.2
VIM-202ENST00000421459 NCOA6Q14686 2063 aaPredicted RBP7.55□□□□□ -1.2
VIM-202ENST00000421459 TRBC2A0A5B9 178 aa7.55□□□□□ -1.2
VIM-202ENST00000421459 TMEM200CA6NKL6 621 aa7.55□□□□□ -1.2
VIM-202ENST00000421459 NPIPA2E9PIF3 369 aa7.55□□□□□ -1.2
VIM-202ENST00000421459 NPIPA3F8WFD2 350 aa7.55□□□□□ -1.2
VIM-202ENST00000421459 ITGA10O75578 1167 aa7.55□□□□□ -1.2
VIM-202ENST00000421459 NADKO95544 446 aaPredicted RBP7.55□□□□□ -1.2
VIM-202ENST00000421459 SMIM10L1P0DMW3 83 aa7.55□□□□□ -1.2
VIM-202ENST00000421459 MLNP12872 115 aa7.55□□□□□ -1.2
VIM-202ENST00000421459 IGFBP2P18065 325 aa7.55□□□□□ -1.2
VIM-202ENST00000421459 IL10P22301 178 aa7.55□□□□□ -1.2
VIM-202ENST00000421459 JAK1P23458 1154 aa7.55□□□□□ -1.2
VIM-202ENST00000421459 ART1P52961 327 aa7.55□□□□□ -1.2
VIM-202ENST00000421459 NUP107P57740 925 aa7.55□□□□□ -1.2
VIM-202ENST00000421459 BTN3A2P78410 334 aa7.55□□□□□ -1.2
VIM-202ENST00000421459 RGS1Q08116 209 aa7.55□□□□□ -1.2
VIM-202ENST00000421459 PWP1Q13610 501 aa7.55□□□□□ -1.2
VIM-202ENST00000421459 RUNX2Q13950 521 aa7.55□□□□□ -1.2
VIM-202ENST00000421459 CSHL1Q14406 222 aa7.55□□□□□ -1.2
VIM-202ENST00000421459 RBBP5Q15291 538 aaKnown RBP7.55□□□□□ -1.2
VIM-202ENST00000421459 MSS51Q4VC12 460 aa7.55□□□□□ -1.2
VIM-202ENST00000421459 TOR1AIP1Q5JTV8 583 aa7.55□□□□□ -1.2
VIM-202ENST00000421459 DUPD1Q68J44 220 aa7.55□□□□□ -1.2
VIM-202ENST00000421459 QSOX2Q6ZRP7 698 aa7.55□□□□□ -1.2
VIM-202ENST00000421459 CLNKQ7Z7G1 428 aa7.55□□□□□ -1.2
VIM-202ENST00000421459 PALM2Q8IXS6 379 aa7.55□□□□□ -1.2
VIM-202ENST00000421459 DMRTC2Q8IXT2 367 aaPredicted RBP7.55□□□□□ -1.2
VIM-202ENST00000421459 LGI4Q8N135 537 aa7.55□□□□□ -1.2
VIM-202ENST00000421459 CYP4Z2PQ8N1L4 340 aa7.55□□□□□ -1.2
VIM-202ENST00000421459 TMEM156Q8N614 296 aa7.55□□□□□ -1.2
VIM-202ENST00000421459 ZNF321PQ8N8H1 164 aa7.55□□□□□ -1.2
VIM-202ENST00000421459 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.55□□□□□ -1.2
VIM-202ENST00000421459 MCUQ8NE86 351 aa7.55□□□□□ -1.2
VIM-202ENST00000421459 LILRB4Q8NHJ6 448 aa7.55□□□□□ -1.2
VIM-202ENST00000421459 C16orf52Q8NHV5 167 aa7.55□□□□□ -1.2
VIM-202ENST00000421459 CREB3L4Q8TEY5 395 aa7.55□□□□□ -1.2
VIM-202ENST00000421459 MAIP1Q8WWC4 291 aa7.55□□□□□ -1.2
VIM-202ENST00000421459 SLC5A11Q8WWX8 675 aa7.55□□□□□ -1.2
VIM-202ENST00000421459 NCLNQ969V3 563 aa7.55□□□□□ -1.2
VIM-202ENST00000421459 SMIM10Q96HG1 83 aa7.55□□□□□ -1.2
VIM-202ENST00000421459 SEC16BQ96JE7 1060 aa7.55□□□□□ -1.2
VIM-202ENST00000421459 PDLIM2Q96JY6 352 aa7.55□□□□□ -1.2
VIM-202ENST00000421459 PWWP2AQ96N64 755 aa7.55□□□□□ -1.2
VIM-202ENST00000421459 SARGQ9BW04 601 aa7.55□□□□□ -1.2
VIM-202ENST00000421459 PLAC1Q9HBJ0 212 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms