RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 ACTR1AP61163 376 aa5.9□□□□□ -1.46
SCN1A-203ENST00000409050 PSPHP78330 225 aa5.9□□□□□ -1.46
SCN1A-203ENST00000409050 LASP1Q14847 261 aaKnown RBP5.9□□□□□ -1.46
SCN1A-203ENST00000409050 LRRC66Q68CR7 880 aa5.9□□□□□ -1.46
SCN1A-203ENST00000409050 LCN8Q6JVE9 175 aa5.9□□□□□ -1.46
SCN1A-203ENST00000409050 SLC22A16Q86VW1 577 aa5.9□□□□□ -1.46
SCN1A-203ENST00000409050 CELF5Q8N6W0 485 aaKnown RBP5.9□□□□□ -1.46
SCN1A-203ENST00000409050 PLA2G15Q8NCC3 412 aa5.9□□□□□ -1.46
SCN1A-203ENST00000409050 OR2T33Q8NG76 320 aa5.9□□□□□ -1.46
SCN1A-203ENST00000409050 OR9A1PQ8NGU1 263 aa5.9□□□□□ -1.46
SCN1A-203ENST00000409050 CLIP3Q96DZ5 547 aa5.9□□□□□ -1.46
SCN1A-203ENST00000409050 SLC41A3Q96GZ6 507 aa5.9□□□□□ -1.46
SCN1A-203ENST00000409050 HSH2DQ96JZ2 352 aa5.9□□□□□ -1.46
SCN1A-203ENST00000409050 LMLNQ96KR4 655 aa5.9□□□□□ -1.46
SCN1A-203ENST00000409050 GFM1Q96RP9 751 aaKnown RBP5.9□□□□□ -1.46
SCN1A-203ENST00000409050 IL4I1Q96RQ9 567 aa5.9□□□□□ -1.46
SCN1A-203ENST00000409050 RIOK2Q9BVS4 552 aaKnown RBP5.9□□□□□ -1.46
SCN1A-203ENST00000409050 NT5DC2Q9H857 520 aa5.9□□□□□ -1.46
SCN1A-203ENST00000409050 DZANK1Q9NVP4 752 aa5.9□□□□□ -1.46
SCN1A-203ENST00000409050 CLCA3PQ9Y6N3 262 aa5.9□□□□□ -1.46
SCN1A-203ENST00000409050 C17orf113A0A1B0GUU1 675 aa5.9□□□□□ -1.46
SCN1A-203ENST00000409050 FAM149AA5PLN7 773 aa5.9□□□□□ -1.46
SCN1A-203ENST00000409050 TMEM150BA6NC51 233 aa5.9□□□□□ -1.46
SCN1A-203ENST00000409050 TMEM63AO94886 807 aa5.9□□□□□ -1.46
SCN1A-203ENST00000409050 IFNA4P05014 189 aa5.9□□□□□ -1.46
SCN1A-203ENST00000409050 ZNF84P51523 738 aa5.9□□□□□ -1.46
SCN1A-203ENST00000409050 CYBRD1Q53TN4 286 aa5.9□□□□□ -1.46
SCN1A-203ENST00000409050 MPP7Q5T2T1 576 aa5.9□□□□□ -1.46
SCN1A-203ENST00000409050 MANEALQ5VSG8 457 aa5.9□□□□□ -1.46
SCN1A-203ENST00000409050 ZNF776Q68DI1 518 aaPredicted RBP5.9□□□□□ -1.46
SCN1A-203ENST00000409050 RTL10Q7L3V2 364 aa5.9□□□□□ -1.46
SCN1A-203ENST00000409050 TSPYL5Q86VY4 417 aaPredicted RBP5.9□□□□□ -1.46
SCN1A-203ENST00000409050 MMAAQ8IVH4 418 aaKnown RBP5.9□□□□□ -1.46
SCN1A-203ENST00000409050 SLC22A15Q8IZD6 547 aa5.9□□□□□ -1.46
SCN1A-203ENST00000409050 CENPSQ8N2Z9 138 aa5.9□□□□□ -1.46
SCN1A-203ENST00000409050 PARP8Q8N3A8 854 aa5.9□□□□□ -1.46
SCN1A-203ENST00000409050 PFDN5Q99471 154 aa5.9□□□□□ -1.46
SCN1A-203ENST00000409050 ZNF350Q9GZX5 532 aa5.9□□□□□ -1.46
SCN1A-203ENST00000409050 TIGARQ9NQ88 270 aa5.9□□□□□ -1.46
SCN1A-203ENST00000409050 GRHPRQ9UBQ7 328 aa5.9□□□□□ -1.46
SCN1A-203ENST00000409050 PRAMEF11O60813 436 aa5.9□□□□□ -1.47
SCN1A-203ENST00000409050 MMP20O60882 483 aa5.9□□□□□ -1.47
SCN1A-203ENST00000409050 JRKO75564 520 aa5.9□□□□□ -1.47
SCN1A-203ENST00000409050 CDRT1O95170 752 aa5.9□□□□□ -1.47
SCN1A-203ENST00000409050 ITGB1P05556 798 aa5.9□□□□□ -1.47
SCN1A-203ENST00000409050 GJB1P08034 283 aa5.9□□□□□ -1.47
SCN1A-203ENST00000409050 CD63P08962 238 aa5.9□□□□□ -1.47
SCN1A-203ENST00000409050 PIRTP0C851 137 aa5.9□□□□□ -1.47
SCN1A-203ENST00000409050 SLC9A3P48764 834 aa5.9□□□□□ -1.47
SCN1A-203ENST00000409050 MTPNP58546 118 aa5.9□□□□□ -1.47
SCN1A-203ENST00000409050 CXCR4P61073 352 aa5.9□□□□□ -1.47
SCN1A-203ENST00000409050 BEX3Q00994 111 aa5.9□□□□□ -1.47
SCN1A-203ENST00000409050 NRG1Q02297 640 aaPredicted RBP5.9□□□□□ -1.47
SCN1A-203ENST00000409050 MLLT1Q03111 559 aaPredicted RBP5.9□□□□□ -1.47
SCN1A-203ENST00000409050 ZNF678Q5SXM1 525 aa5.9□□□□□ -1.47
SCN1A-203ENST00000409050 C6orf141Q5SZD1 244 aa5.9□□□□□ -1.47
SCN1A-203ENST00000409050 STEAP4Q687X5 459 aa5.9□□□□□ -1.47
SCN1A-203ENST00000409050 ARL9Q6T311 187 aa5.9□□□□□ -1.47
SCN1A-203ENST00000409050 TMIGD1Q6UXZ0 262 aa5.9□□□□□ -1.47
SCN1A-203ENST00000409050 PRSS48Q7RTY5 328 aa5.9□□□□□ -1.47
SCN1A-203ENST00000409050 GOLGA7Q7Z5G4 137 aa5.9□□□□□ -1.47
SCN1A-203ENST00000409050 PARGQ86W56 976 aa5.9□□□□□ -1.47
SCN1A-203ENST00000409050 ZNF584Q8IVC4 421 aa5.9□□□□□ -1.47
SCN1A-203ENST00000409050 HS3ST5Q8IZT8 346 aa5.9□□□□□ -1.47
SCN1A-203ENST00000409050 SLC43A2Q8N370 569 aa5.9□□□□□ -1.47
SCN1A-203ENST00000409050 CCDC71LQ8N9Z2 235 aa5.9□□□□□ -1.47
SCN1A-203ENST00000409050 OR52J3Q8NH60 311 aa5.9□□□□□ -1.47
SCN1A-203ENST00000409050 TM9SF4Q92544 642 aa5.9□□□□□ -1.47
SCN1A-203ENST00000409050 ORAI3Q9BRQ5 295 aa5.9□□□□□ -1.47
SCN1A-203ENST00000409050 TSSK6Q9BXA6 273 aa5.9□□□□□ -1.47
SCN1A-203ENST00000409050 OR51E2Q9H255 320 aa5.9□□□□□ -1.47
SCN1A-203ENST00000409050 MCCC2Q9HCC0 563 aa5.9□□□□□ -1.47
SCN1A-203ENST00000409050 SMURF1Q9HCE7 757 aa5.9□□□□□ -1.47
SCN1A-203ENST00000409050 SLC7A11Q9UPY5 501 aa5.9□□□□□ -1.47
SCN1A-203ENST00000409050 OARD1Q9Y530 152 aa5.9□□□□□ -1.47
SCN1A-203ENST00000409050 MAP2P11137 1827 aaKnown RBP5.9□□□□□ -1.47
SCN1A-203ENST00000409050 CREBL2O60519 120 aaPredicted RBP5.9□□□□□ -1.47
SCN1A-203ENST00000409050 DIRAS3O95661 229 aa5.9□□□□□ -1.47
SCN1A-203ENST00000409050 MT-CO2P00403 227 aa5.9□□□□□ -1.47
SCN1A-203ENST00000409050 SPATA31D3P0C874 917 aa5.9□□□□□ -1.47
SCN1A-203ENST00000409050 ETFAP13804 333 aa5.9□□□□□ -1.47
SCN1A-203ENST00000409050 XRCC1P18887 633 aaPredicted RBP5.9□□□□□ -1.47
SCN1A-203ENST00000409050 IL4RP24394 825 aa5.9□□□□□ -1.47
SCN1A-203ENST00000409050 NIPAL4Q0D2K0 466 aa5.9□□□□□ -1.47
SCN1A-203ENST00000409050 FAM182AQ5T1J6 154 aa5.9□□□□□ -1.47
SCN1A-203ENST00000409050 SPATA31D4Q6ZUB0 917 aa5.9□□□□□ -1.47
SCN1A-203ENST00000409050 PDZD9Q8IXQ8 264 aa5.9□□□□□ -1.47
SCN1A-203ENST00000409050 ZNF101Q8IZC7 436 aa5.9□□□□□ -1.47
SCN1A-203ENST00000409050 SPATA6LQ8N4H0 392 aa5.9□□□□□ -1.47
SCN1A-203ENST00000409050 AQP11Q8NBQ7 271 aa5.9□□□□□ -1.47
SCN1A-203ENST00000409050 ATP6V1C2Q8NEY4 427 aa5.9□□□□□ -1.47
SCN1A-203ENST00000409050 OR6K6Q8NGW6 343 aa5.9□□□□□ -1.47
SCN1A-203ENST00000409050 PSMG2Q969U7 264 aa5.9□□□□□ -1.47
SCN1A-203ENST00000409050 ISOC1Q96CN7 298 aa5.9□□□□□ -1.47
SCN1A-203ENST00000409050 PWWP2AQ96N64 755 aa5.9□□□□□ -1.47
SCN1A-203ENST00000409050 ZNF700Q9H0M5 742 aa5.9□□□□□ -1.47
SCN1A-203ENST00000409050 SLC27A5Q9Y2P5 690 aa5.9□□□□□ -1.47
SCN1A-203ENST00000409050 SPO11Q9Y5K1 396 aa5.9□□□□□ -1.47
SCN1A-203ENST00000409050 CPQQ9Y646 472 aa5.9□□□□□ -1.47
SCN1A-203ENST00000409050 C1orf226A1L170 272 aa5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms