RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 OR8K5Q8NH50 307 aa13.84□□□□□ -0.19
COL7A1-201ENST00000328333 AKTIPQ9H8T0 292 aa13.84□□□□□ -0.19
COL7A1-201ENST00000328333 TRBC2A0A5B9 178 aa13.83□□□□□ -0.19
COL7A1-201ENST00000328333 SLC15A5A6NIM6 579 aa13.83□□□□□ -0.19
COL7A1-201ENST00000328333 EFCAB7A8K855 629 aa13.83□□□□□ -0.19
COL7A1-201ENST00000328333 F8W036 122 aa13.83□□□□□ -0.19
COL7A1-201ENST00000328333 VIPP01282 170 aa13.83□□□□□ -0.19
COL7A1-201ENST00000328333 TPT1P13693 172 aaKnown RBP13.83□□□□□ -0.19
COL7A1-201ENST00000328333 NR4A2P43354 598 aa13.83□□□□□ -0.19
COL7A1-201ENST00000328333 BLOC1S1P78537 153 aa13.83□□□□□ -0.19
COL7A1-201ENST00000328333 MRIQ9BWK5 157 aa13.83□□□□□ -0.19
COL7A1-201ENST00000328333 DERL2Q9GZP9 239 aa13.83□□□□□ -0.19
COL7A1-201ENST00000328333 POPDC3Q9HBV1 291 aa13.83□□□□□ -0.19
COL7A1-201ENST00000328333 ACOT13Q9NPJ3 140 aa13.83□□□□□ -0.19
COL7A1-201ENST00000328333 TIMM22Q9Y584 194 aa13.83□□□□□ -0.19
COL7A1-201ENST00000328333 SPTBN2O15020 2390 aa13.83□□□□□ -0.19
COL7A1-201ENST00000328333 EPHB6O15197 1021 aa13.83□□□□□ -0.19
COL7A1-201ENST00000328333 EEF1E1O43324 174 aaKnown RBP13.83□□□□□ -0.19
COL7A1-201ENST00000328333 MYCLP1P12525 358 aaPredicted RBP13.83□□□□□ -0.19
COL7A1-201ENST00000328333 MAXP61244 160 aa13.83□□□□□ -0.19
COL7A1-201ENST00000328333 MRPS10P82664 201 aaKnown RBP13.83□□□□□ -0.19
COL7A1-201ENST00000328333 CREB5Q02930 508 aa13.83□□□□□ -0.19
COL7A1-201ENST00000328333 TMEM203Q969S6 136 aa13.83□□□□□ -0.19
COL7A1-201ENST00000328333 SLC41A3Q96GZ6 507 aa13.83□□□□□ -0.19
COL7A1-201ENST00000328333 ALPK1Q96QP1 1244 aa13.83□□□□□ -0.19
COL7A1-201ENST00000328333 PIP5K1AQ99755 562 aa13.83□□□□□ -0.19
COL7A1-201ENST00000328333 SYN3O14994 580 aa13.83□□□□□ -0.2
COL7A1-201ENST00000328333 SLC26A5P58743 744 aa13.83□□□□□ -0.2
COL7A1-201ENST00000328333 LY6KQ17RY6 165 aa13.83□□□□□ -0.2
COL7A1-201ENST00000328333 UGT3A2Q3SY77 523 aa13.83□□□□□ -0.2
COL7A1-201ENST00000328333 ATG9BQ674R7 924 aa13.83□□□□□ -0.2
COL7A1-201ENST00000328333 TNFAIP8L2Q6P589 184 aaPredicted RBP13.83□□□□□ -0.2
COL7A1-201ENST00000328333 SLC7A13Q8TCU3 470 aa13.83□□□□□ -0.2
COL7A1-201ENST00000328333 ADAM2Q99965 735 aa13.83□□□□□ -0.2
COL7A1-201ENST00000328333 TTPALQ9BTX7 342 aa13.83□□□□□ -0.2
COL7A1-201ENST00000328333 COL3A1P02461 1466 aaPredicted RBP13.83□□□□□ -0.2
COL7A1-201ENST00000328333 CSF1P09603 554 aa13.83□□□□□ -0.2
COL7A1-201ENST00000328333 BRAT1Q6PJG6 821 aa13.83□□□□□ -0.2
COL7A1-201ENST00000328333 OR10G6Q8NH81 332 aa13.83□□□□□ -0.2
COL7A1-201ENST00000328333 ADAD1Q96M93 576 aaKnown RBP13.83□□□□□ -0.2
COL7A1-201ENST00000328333 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.83□□□□□ -0.2
COL7A1-201ENST00000328333 CACNA1IQ9P0X4 2223 aa13.83□□□□□ -0.2
COL7A1-201ENST00000328333 PRKACBP22694 351 aa13.83□□□□□ -0.2
COL7A1-201ENST00000328333 GRIK2Q13002 908 aa13.83□□□□□ -0.2
COL7A1-201ENST00000328333 PDE12Q6L8Q7 609 aaKnown RBP13.83□□□□□ -0.2
COL7A1-201ENST00000328333 FAM43BQ6ZT52 329 aaPredicted RBP13.83□□□□□ -0.2
COL7A1-201ENST00000328333 LAS2Q8IYD9 372 aa13.83□□□□□ -0.2
COL7A1-201ENST00000328333 SLC22A15Q8IZD6 547 aa13.83□□□□□ -0.2
COL7A1-201ENST00000328333 CPA6Q8N4T0 437 aa13.83□□□□□ -0.2
COL7A1-201ENST00000328333 C3orf49Q96BT1 292 aa13.83□□□□□ -0.2
COL7A1-201ENST00000328333 ZNF558Q96NG5 402 aa13.83□□□□□ -0.2
COL7A1-201ENST00000328333 KIF25Q9UIL4 384 aa13.83□□□□□ -0.2
COL7A1-201ENST00000328333 RIMS1Q86UR5 1692 aaKnown RBP13.83□□□□□ -0.2
COL7A1-201ENST00000328333 SEC14L2O76054 403 aa13.83□□□□□ -0.2
COL7A1-201ENST00000328333 SLC32A1Q9H598 525 aa13.83□□□□□ -0.2
COL7A1-201ENST00000328333 GRHPRQ9UBQ7 328 aa13.83□□□□□ -0.2
COL7A1-201ENST00000328333 TMEM131LA2VDJ0 1609 aa13.83□□□□□ -0.2
COL7A1-201ENST00000328333 SPATA31C2B4DYI2 1134 aa13.83□□□□□ -0.2
COL7A1-201ENST00000328333 RHCEP18577 417 aa13.83□□□□□ -0.2
COL7A1-201ENST00000328333 AHCYP23526 432 aa13.83□□□□□ -0.2
COL7A1-201ENST00000328333 ADORA2AP29274 412 aa13.83□□□□□ -0.2
COL7A1-201ENST00000328333 CRHR2Q13324 411 aa13.83□□□□□ -0.2
COL7A1-201ENST00000328333 ZNF598Q86UK7 904 aaKnown RBP13.83□□□□□ -0.2
COL7A1-201ENST00000328333 FAM156AQ8NDB6 213 aa13.83□□□□□ -0.2
COL7A1-201ENST00000328333 RNF128Q8TEB7 428 aa13.83□□□□□ -0.2
COL7A1-201ENST00000328333 A0A1W2PRB8 838 aa13.83□□□□□ -0.2
COL7A1-201ENST00000328333 LCHNA4D1U4 455 aa13.83□□□□□ -0.2
COL7A1-201ENST00000328333 TMEM150CB9EJG8 249 aa13.83□□□□□ -0.2
COL7A1-201ENST00000328333 IRAK2O43187 625 aa13.83□□□□□ -0.2
COL7A1-201ENST00000328333 ENGP17813 658 aa13.83□□□□□ -0.2
COL7A1-201ENST00000328333 FOXN2P32314 431 aa13.83□□□□□ -0.2
COL7A1-201ENST00000328333 SOX10P56693 466 aa13.83□□□□□ -0.2
COL7A1-201ENST00000328333 ZNF460Q14592 562 aa13.83□□□□□ -0.2
COL7A1-201ENST00000328333 CEACAM20Q6UY09 585 aa13.83□□□□□ -0.2
COL7A1-201ENST00000328333 DEDD2Q8WXF8 326 aa13.83□□□□□ -0.2
COL7A1-201ENST00000328333 NTAN1Q96AB6 310 aa13.83□□□□□ -0.2
COL7A1-201ENST00000328333 TTYH2Q9BSA4 534 aa13.83□□□□□ -0.2
COL7A1-201ENST00000328333 URM1Q9BTM9 101 aaKnown RBP13.83□□□□□ -0.2
COL7A1-201ENST00000328333 MROQ9BYG7 248 aa13.83□□□□□ -0.2
COL7A1-201ENST00000328333 A8MX80 341 aa13.82□□□□□ -0.2
COL7A1-201ENST00000328333 TLX2O43763 284 aaPredicted RBP13.82□□□□□ -0.2
COL7A1-201ENST00000328333 TPST2O60704 377 aa13.82□□□□□ -0.2
COL7A1-201ENST00000328333 CAMLGP49069 296 aa13.82□□□□□ -0.2
COL7A1-201ENST00000328333 SCGB2A2Q13296 93 aa13.82□□□□□ -0.2
COL7A1-201ENST00000328333 PARGQ86W56 976 aa13.82□□□□□ -0.2
COL7A1-201ENST00000328333 CNTNAP3BQ96NU0 1288 aa13.82□□□□□ -0.2
COL7A1-201ENST00000328333 PCDHAC1Q9H158 963 aa13.82□□□□□ -0.2
COL7A1-201ENST00000328333 ADARB2Q9NS39 739 aaKnown RBP13.82□□□□□ -0.2
COL7A1-201ENST00000328333 ST14Q9Y5Y6 855 aa13.82□□□□□ -0.2
COL7A1-201ENST00000328333 LSAMPQ13449 338 aa13.82□□□□□ -0.2
COL7A1-201ENST00000328333 FAM69AQ5T7M9 428 aa13.82□□□□□ -0.2
COL7A1-201ENST00000328333 AUTS2Q8WXX7 1259 aa13.82□□□□□ -0.2
COL7A1-201ENST00000328333 CMTM7Q96FZ5 175 aa13.82□□□□□ -0.2
COL7A1-201ENST00000328333 NT5DC2Q9H857 520 aa13.82□□□□□ -0.2
COL7A1-201ENST00000328333 PCDHB14Q9Y5E9 798 aa13.82□□□□□ -0.2
COL7A1-201ENST00000328333 NUBP2Q9Y5Y2 271 aa13.82□□□□□ -0.2
COL7A1-201ENST00000328333 RGPD8O14715 1765 aaPredicted RBP13.82□□□□□ -0.2
COL7A1-201ENST00000328333 EME2A4GXA9 379 aaPredicted RBP13.82□□□□□ -0.2
COL7A1-201ENST00000328333 FAM159BA6NKW6 160 aa13.82□□□□□ -0.2
COL7A1-201ENST00000328333 UBE2Q2LH0YL09 131 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms