RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 LURAP1Q96LR2 239 aa2.88□□□□□ -1.95
HMGB1-201ENST00000326004 C2orf48Q96LS8 159 aa2.88□□□□□ -1.95
HMGB1-201ENST00000326004 LINC00479Q96M42 142 aa2.88□□□□□ -1.95
HMGB1-201ENST00000326004 IL12RB2Q99665 862 aa2.88□□□□□ -1.95
HMGB1-201ENST00000326004 C17orf62Q9BQA9 187 aa2.88□□□□□ -1.95
HMGB1-201ENST00000326004 TRIM51Q9BSJ1 452 aa2.88□□□□□ -1.95
HMGB1-201ENST00000326004 DESI2Q9BSY9 194 aa2.88□□□□□ -1.95
HMGB1-201ENST00000326004 MCRIP2Q9BUT9 160 aaKnown RBP2.88□□□□□ -1.95
HMGB1-201ENST00000326004 DNAI2Q9GZS0 605 aa2.88□□□□□ -1.95
HMGB1-201ENST00000326004 ZNF350Q9GZX5 532 aa2.88□□□□□ -1.95
HMGB1-201ENST00000326004 SRD5A3Q9H8P0 318 aa2.88□□□□□ -1.95
HMGB1-201ENST00000326004 GPR173Q9NS66 373 aa2.88□□□□□ -1.95
HMGB1-201ENST00000326004 DNAJC17Q9NVM6 304 aaKnown RBP2.88□□□□□ -1.95
HMGB1-201ENST00000326004 POLKQ9UBT6 870 aa2.88□□□□□ -1.95
HMGB1-201ENST00000326004 NSG2Q9Y328 171 aa2.88□□□□□ -1.95
HMGB1-201ENST00000326004 CUX1P39880 1505 aa2.88□□□□□ -1.95
HMGB1-201ENST00000326004 MAGI3Q5TCQ9 1506 aa2.88□□□□□ -1.95
HMGB1-201ENST00000326004 FER1L5A0AVI2 2057 aa2.88□□□□□ -1.95
HMGB1-201ENST00000326004 A0A087WZ39 114 aa2.87□□□□□ -1.95
HMGB1-201ENST00000326004 C13orf42A0A1B0GVH6 325 aa2.87□□□□□ -1.95
HMGB1-201ENST00000326004 C2orf92A0A1B0GVN3 265 aa2.87□□□□□ -1.95
HMGB1-201ENST00000326004 BICDL2A1A5D9 508 aa2.87□□□□□ -1.95
HMGB1-201ENST00000326004 ANTXRLA6NF34 631 aa2.87□□□□□ -1.95
HMGB1-201ENST00000326004 KPNA7A9QM74 516 aa2.87□□□□□ -1.95
HMGB1-201ENST00000326004 CTDSPLO15194 276 aa2.87□□□□□ -1.95
HMGB1-201ENST00000326004 KIF5CO60282 957 aa2.87□□□□□ -1.95
HMGB1-201ENST00000326004 SLC16A8O95907 504 aa2.87□□□□□ -1.95
HMGB1-201ENST00000326004 TRIM49P0CI25 452 aa2.87□□□□□ -1.95
HMGB1-201ENST00000326004 TRIM49CP0CI26 452 aa2.87□□□□□ -1.95
HMGB1-201ENST00000326004 DLATP10515 647 aaKnown RBP2.87□□□□□ -1.95
HMGB1-201ENST00000326004 GOT1P17174 413 aa2.87□□□□□ -1.95
HMGB1-201ENST00000326004 PRKACGP22612 351 aa2.87□□□□□ -1.95
HMGB1-201ENST00000326004 KCNJ1P48048 391 aa2.87□□□□□ -1.95
HMGB1-201ENST00000326004 LUMP51884 338 aaPredicted RBP2.87□□□□□ -1.95
HMGB1-201ENST00000326004 SNU13P55769 128 aaKnown RBP2.87□□□□□ -1.95
HMGB1-201ENST00000326004 STX1BP61266 288 aa2.87□□□□□ -1.95
HMGB1-201ENST00000326004 AKAP17AQ02040 695 aaKnown RBP2.87□□□□□ -1.95
HMGB1-201ENST00000326004 ARHGAP1Q07960 439 aa2.87□□□□□ -1.95
HMGB1-201ENST00000326004 GRB14Q14449 540 aa2.87□□□□□ -1.95
HMGB1-201ENST00000326004 NFE2L1Q14494 772 aa2.87□□□□□ -1.95
HMGB1-201ENST00000326004 SLMAPQ14BN4 828 aa2.87□□□□□ -1.95
HMGB1-201ENST00000326004 CCDC158Q5M9N0 1113 aa2.87□□□□□ -1.95
HMGB1-201ENST00000326004 LRRC38Q5VT99 294 aa2.87□□□□□ -1.95
HMGB1-201ENST00000326004 NHLRC1Q6VVB1 395 aa2.87□□□□□ -1.95
HMGB1-201ENST00000326004 FRRS1Q6ZNA5 592 aa2.87□□□□□ -1.95
HMGB1-201ENST00000326004 Q6ZRP5 223 aa2.87□□□□□ -1.95
HMGB1-201ENST00000326004 FAM43BQ6ZT52 329 aaPredicted RBP2.87□□□□□ -1.95
HMGB1-201ENST00000326004 C15orf52Q6ZUT6 534 aaKnown RBP2.87□□□□□ -1.95
HMGB1-201ENST00000326004 PIWIL3Q7Z3Z3 882 aaKnown RBP2.87□□□□□ -1.95
HMGB1-201ENST00000326004 ZSCAN30Q86W11 494 aa2.87□□□□□ -1.95
HMGB1-201ENST00000326004 SYCP3Q8IZU3 236 aa2.87□□□□□ -1.95
HMGB1-201ENST00000326004 NXPE2Q96DL1 559 aa2.87□□□□□ -1.95
HMGB1-201ENST00000326004 HNRNPABQ99729 332 aaKnown RBP2.87□□□□□ -1.95
HMGB1-201ENST00000326004 GPATCH1Q9BRR8 931 aaKnown RBP2.87□□□□□ -1.95
HMGB1-201ENST00000326004 FUT8Q9BYC5 575 aa2.87□□□□□ -1.95
HMGB1-201ENST00000326004 FGFBP2Q9BYJ0 223 aa2.87□□□□□ -1.95
HMGB1-201ENST00000326004 C5orf66Q9H5L9 145 aa2.87□□□□□ -1.95
HMGB1-201ENST00000326004 LNPEPQ9UIQ6 1025 aa2.87□□□□□ -1.95
HMGB1-201ENST00000326004 SATB2Q9UPW6 733 aa2.87□□□□□ -1.95
HMGB1-201ENST00000326004 ITM2BQ9Y287 266 aa2.87□□□□□ -1.95
HMGB1-201ENST00000326004 HBS1LQ9Y450 684 aaKnown RBP2.87□□□□□ -1.95
HMGB1-201ENST00000326004 WIPI2Q9Y4P8 454 aa2.87□□□□□ -1.95
HMGB1-201ENST00000326004 FGD5Q6ZNL6 1462 aa2.87□□□□□ -1.95
HMGB1-201ENST00000326004 CPS1P31327 1500 aa2.87□□□□□ -1.95
HMGB1-201ENST00000326004 RNF123Q5XPI4 1314 aa2.87□□□□□ -1.95
HMGB1-201ENST00000326004 CAMSAP1Q5T5Y3 1602 aa2.86□□□□□ -1.95
HMGB1-201ENST00000326004 LOC105371242A0A075B767 164 aa2.86□□□□□ -1.95
HMGB1-201ENST00000326004 hCG_38984A0A1B0GV85 526 aa2.86□□□□□ -1.95
HMGB1-201ENST00000326004 IQCMA0A1B0GVH7 501 aa2.86□□□□□ -1.95
HMGB1-201ENST00000326004 NDUFAF8A1L188 74 aa2.86□□□□□ -1.95
HMGB1-201ENST00000326004 FAM149AA5PLN7 773 aa2.86□□□□□ -1.95
HMGB1-201ENST00000326004 MPTX1A8MV57 137 aa2.86□□□□□ -1.95
HMGB1-201ENST00000326004 RNF103O00237 685 aa2.86□□□□□ -1.95
HMGB1-201ENST00000326004 ZNF263O14978 683 aa2.86□□□□□ -1.95
HMGB1-201ENST00000326004 DCXO43602 365 aa2.86□□□□□ -1.95
HMGB1-201ENST00000326004 GRAP2O75791 330 aa2.86□□□□□ -1.95
HMGB1-201ENST00000326004 MT-ND2P03891 347 aa2.86□□□□□ -1.95
HMGB1-201ENST00000326004 VEGFCP49767 419 aa2.86□□□□□ -1.95
HMGB1-201ENST00000326004 ABRQ12979 859 aa2.86□□□□□ -1.95
HMGB1-201ENST00000326004 MTF1Q14872 753 aa2.86□□□□□ -1.95
HMGB1-201ENST00000326004 FCN2Q15485 313 aa2.86□□□□□ -1.95
HMGB1-201ENST00000326004 GLRA4Q5JXX5 417 aa2.86□□□□□ -1.95
HMGB1-201ENST00000326004 CES4AQ5XG92 561 aa2.86□□□□□ -1.95
HMGB1-201ENST00000326004 PM20D1Q6GTS8 502 aa2.86□□□□□ -1.95
HMGB1-201ENST00000326004 TCEAL6Q6IPX3 200 aa2.86□□□□□ -1.95
HMGB1-201ENST00000326004 PODNL1Q6PEZ8 512 aa2.86□□□□□ -1.95
HMGB1-201ENST00000326004 KIF6Q6ZMV9 814 aa2.86□□□□□ -1.95
HMGB1-201ENST00000326004 TRMT11Q7Z4G4 463 aaKnown RBP2.86□□□□□ -1.95
HMGB1-201ENST00000326004 LRRTM1Q86UE6 522 aa2.86□□□□□ -1.95
HMGB1-201ENST00000326004 IQCA1Q86XH1 822 aa2.86□□□□□ -1.95
HMGB1-201ENST00000326004 CATSPERDQ86XM0 798 aa2.86□□□□□ -1.95
HMGB1-201ENST00000326004 KLHDC8AQ8IYD2 350 aa2.86□□□□□ -1.95
HMGB1-201ENST00000326004 SLC22A15Q8IZD6 547 aa2.86□□□□□ -1.95
HMGB1-201ENST00000326004 CHCHD4Q8N4Q1 142 aa2.86□□□□□ -1.95
HMGB1-201ENST00000326004 TEX26Q8N6G2 289 aa2.86□□□□□ -1.95
HMGB1-201ENST00000326004 KIAA0895Q8NCT3 520 aa2.86□□□□□ -1.95
HMGB1-201ENST00000326004 NUP37Q8NFH4 326 aa2.86□□□□□ -1.95
HMGB1-201ENST00000326004 FAM218AQ96MZ4 157 aa2.86□□□□□ -1.95
HMGB1-201ENST00000326004 NEDD4LQ96PU5 975 aa2.86□□□□□ -1.95
HMGB1-201ENST00000326004 RASL10BQ96S79 203 aa2.86□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms