RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 TMEM80Q96HE8 168 aa7.66□□□□□ -1.18
CIITA-201ENST00000324288 CARS2Q9HA77 564 aaKnown RBP7.66□□□□□ -1.18
CIITA-201ENST00000324288 C6orf47O95873 294 aa7.66□□□□□ -1.18
CIITA-201ENST00000324288 GSTT2P0CG29 244 aa7.66□□□□□ -1.18
CIITA-201ENST00000324288 MAP2K3P46734 347 aa7.66□□□□□ -1.18
CIITA-201ENST00000324288 HCAR2Q8TDS4 363 aa7.66□□□□□ -1.18
CIITA-201ENST00000324288 SH3YL1Q96HL8 342 aaPredicted RBP7.66□□□□□ -1.18
CIITA-201ENST00000324288 A0A0J9YVX5 310 aa7.66□□□□□ -1.18
CIITA-201ENST00000324288 MAD2L1BPQ15013 274 aaPredicted RBP7.66□□□□□ -1.18
CIITA-201ENST00000324288 DUOXA1Q1HG43 343 aa7.66□□□□□ -1.18
CIITA-201ENST00000324288 IRF2BP1Q8IU81 584 aa7.66□□□□□ -1.18
CIITA-201ENST00000324288 TCEANCQ8N8B7 351 aa7.66□□□□□ -1.18
CIITA-201ENST00000324288 TCEAL3Q969E4 200 aa7.66□□□□□ -1.18
CIITA-201ENST00000324288 PRDM9Q9NQV7 894 aa7.66□□□□□ -1.18
CIITA-201ENST00000324288 WASHC1A8K0Z3 465 aa7.66□□□□□ -1.18
CIITA-201ENST00000324288 RFPL1O75677 317 aa7.66□□□□□ -1.18
CIITA-201ENST00000324288 AHSA1O95433 338 aa7.66□□□□□ -1.18
CIITA-201ENST00000324288 CSKP41240 450 aa7.66□□□□□ -1.18
CIITA-201ENST00000324288 ASTE1Q2TB18 679 aaPredicted RBP7.66□□□□□ -1.18
CIITA-201ENST00000324288 OR2T5Q6IEZ7 315 aa7.66□□□□□ -1.18
CIITA-201ENST00000324288 GPAT4Q86UL3 456 aa7.66□□□□□ -1.18
CIITA-201ENST00000324288 OR2T29Q8NH02 315 aa7.66□□□□□ -1.18
CIITA-201ENST00000324288 NCSTNQ92542 709 aa7.66□□□□□ -1.18
CIITA-201ENST00000324288 OTUB2Q96DC9 234 aa7.66□□□□□ -1.18
CIITA-201ENST00000324288 P2RY13Q9BPV8 354 aa7.66□□□□□ -1.18
CIITA-201ENST00000324288 FANCFQ9NPI8 374 aa7.66□□□□□ -1.18
CIITA-201ENST00000324288 A0A1W2PPL8 197 aa7.66□□□□□ -1.18
CIITA-201ENST00000324288 ERI3O43414 337 aaKnown RBP7.66□□□□□ -1.18
CIITA-201ENST00000324288 CDC123O75794 336 aaPredicted RBP7.66□□□□□ -1.18
CIITA-201ENST00000324288 BCAS2O75934 225 aaPredicted RBP7.66□□□□□ -1.18
CIITA-201ENST00000324288 MMP8P22894 467 aa7.66□□□□□ -1.18
CIITA-201ENST00000324288 GJA5P36382 358 aa7.66□□□□□ -1.18
CIITA-201ENST00000324288 PBX1P40424 430 aa7.66□□□□□ -1.18
CIITA-201ENST00000324288 ELP2Q6IA86 826 aa7.66□□□□□ -1.18
CIITA-201ENST00000324288 ERMP1Q7Z2K6 904 aa7.66□□□□□ -1.18
CIITA-201ENST00000324288 TMIEQ8NEW7 156 aa7.66□□□□□ -1.18
CIITA-201ENST00000324288 SETD7Q8WTS6 366 aaKnown RBP7.66□□□□□ -1.18
CIITA-201ENST00000324288 ALPK1Q96QP1 1244 aa7.66□□□□□ -1.18
CIITA-201ENST00000324288 DIP2BQ9P265 1576 aa7.66□□□□□ -1.18
CIITA-201ENST00000324288 SMIM28A0A1B0GU29 152 aa7.66□□□□□ -1.18
CIITA-201ENST00000324288 ZNF670-ZNF695F2Z2N8 137 aa7.66□□□□□ -1.18
CIITA-201ENST00000324288 ABCB7O75027 752 aa7.66□□□□□ -1.18
CIITA-201ENST00000324288 ITGB5P18084 799 aa7.66□□□□□ -1.18
CIITA-201ENST00000324288 GRM5P41594 1212 aa7.66□□□□□ -1.18
CIITA-201ENST00000324288 DHPSP49366 369 aaPredicted RBP7.66□□□□□ -1.18
CIITA-201ENST00000324288 SCML4Q8N228 414 aa7.66□□□□□ -1.18
CIITA-201ENST00000324288 SHKBP1Q8TBC3 707 aa7.66□□□□□ -1.18
CIITA-201ENST00000324288 ZNF641Q96N77 438 aaPredicted RBP7.66□□□□□ -1.18
CIITA-201ENST00000324288 TMEM74Q96NL1 305 aa7.66□□□□□ -1.18
CIITA-201ENST00000324288 DUSP26Q9BV47 211 aa7.66□□□□□ -1.18
CIITA-201ENST00000324288 UBIAD1Q9Y5Z9 338 aa7.66□□□□□ -1.18
CIITA-201ENST00000324288 B8ZZF3 427 aa7.66□□□□□ -1.18
CIITA-201ENST00000324288 F8W036 122 aa7.66□□□□□ -1.18
CIITA-201ENST00000324288 BLOC1S5-TXNDC5H3BN57 136 aa7.66□□□□□ -1.18
CIITA-201ENST00000324288 HSPA12AO43301 675 aa7.66□□□□□ -1.18
CIITA-201ENST00000324288 PIK3CBP42338 1070 aa7.66□□□□□ -1.18
CIITA-201ENST00000324288 BLOC1S1P78537 153 aa7.66□□□□□ -1.18
CIITA-201ENST00000324288 RBM39Q14498 530 aaKnown RBP7.66□□□□□ -1.18
CIITA-201ENST00000324288 FCAMRQ8WWV6 532 aa7.66□□□□□ -1.18
CIITA-201ENST00000324288 TAS2R10Q9NYW0 307 aa7.66□□□□□ -1.18
CIITA-201ENST00000324288 ZDHHC2Q9UIJ5 367 aa7.66□□□□□ -1.18
CIITA-201ENST00000324288 DKKL1Q9UK85 242 aa7.66□□□□□ -1.18
CIITA-201ENST00000324288 ROS1P08922 2347 aa7.66□□□□□ -1.18
CIITA-201ENST00000324288 LRRC32Q14392 662 aa7.65□□□□□ -1.18
CIITA-201ENST00000324288 POC1BQ8TC44 478 aa7.65□□□□□ -1.18
CIITA-201ENST00000324288 SMG9Q9H0W8 520 aaKnown RBP7.65□□□□□ -1.18
CIITA-201ENST00000324288 TAS2R9Q9NYW1 312 aa7.65□□□□□ -1.18
CIITA-201ENST00000324288 CIB4A0PJX0 185 aa7.65□□□□□ -1.18
CIITA-201ENST00000324288 FAM170BA6NMN3 283 aa7.65□□□□□ -1.18
CIITA-201ENST00000324288 CASC3O15234 703 aaKnown RBP7.65□□□□□ -1.18
CIITA-201ENST00000324288 HNRNPH3P31942 346 aaKnown RBP7.65□□□□□ -1.18
CIITA-201ENST00000324288 GSCP56915 257 aaPredicted RBP7.65□□□□□ -1.18
CIITA-201ENST00000324288 MLLT1Q03111 559 aaPredicted RBP7.65□□□□□ -1.18
CIITA-201ENST00000324288 PDGFRLQ15198 375 aa7.65□□□□□ -1.18
CIITA-201ENST00000324288 AMZ2Q86W34 360 aa7.65□□□□□ -1.18
CIITA-201ENST00000324288 MMAAQ8IVH4 418 aaKnown RBP7.65□□□□□ -1.18
CIITA-201ENST00000324288 FNDC8Q8TC99 324 aa7.65□□□□□ -1.18
CIITA-201ENST00000324288 THEM6Q8WUY1 208 aa7.65□□□□□ -1.18
CIITA-201ENST00000324288 LRRC3Q9BY71 257 aa7.65□□□□□ -1.18
CIITA-201ENST00000324288 FZD4Q9ULV1 537 aa7.65□□□□□ -1.18
CIITA-201ENST00000324288 LRRC42Q9Y546 428 aa7.65□□□□□ -1.18
CIITA-201ENST00000324288 ZGRF1Q86YA3 2104 aa7.65□□□□□ -1.18
CIITA-201ENST00000324288 PRKAR1BP31321 381 aa7.65□□□□□ -1.18
CIITA-201ENST00000324288 GMPRP36959 345 aa7.65□□□□□ -1.18
CIITA-201ENST00000324288 GPR157Q5UAW9 335 aa7.65□□□□□ -1.18
CIITA-201ENST00000324288 ENPP7Q6UWV6 458 aa7.65□□□□□ -1.18
CIITA-201ENST00000324288 SHFQ7M4L6 423 aa7.65□□□□□ -1.18
CIITA-201ENST00000324288 RNF130Q86XS8 419 aa7.65□□□□□ -1.18
CIITA-201ENST00000324288 PCED1BQ96HM7 432 aa7.65□□□□□ -1.18
CIITA-201ENST00000324288 LOC100130705A0A1B0GUX0 176 aa7.65□□□□□ -1.18
CIITA-201ENST00000324288 TDGQ13569 410 aa7.65□□□□□ -1.18
CIITA-201ENST00000324288 INTS6LQ5JSJ4 861 aaKnown RBP7.65□□□□□ -1.18
CIITA-201ENST00000324288 SHQ1Q6PI26 577 aaKnown RBP7.65□□□□□ -1.18
CIITA-201ENST00000324288 PAMR1Q6UXH9 720 aa7.65□□□□□ -1.18
CIITA-201ENST00000324288 DCAKDQ8WVC6 231 aa7.65□□□□□ -1.18
CIITA-201ENST00000324288 TFAP2BQ92481 460 aa7.65□□□□□ -1.18
CIITA-201ENST00000324288 ZBED6CLQ96FA7 236 aaPredicted RBP7.65□□□□□ -1.18
CIITA-201ENST00000324288 RETREG1Q9H6L5 497 aa7.65□□□□□ -1.18
CIITA-201ENST00000324288 NRXN1Q9ULB1 1477 aa7.65□□□□□ -1.18
CIITA-201ENST00000324288 EEF1E1-BLOC1S5C9J1V9 151 aa7.65□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms