RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 SETMARQ53H47 684 aaPredicted RBP7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 OR7E24Q6IFN5 339 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 KIAA1161Q6NSJ0 714 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 WDR73Q6P4I2 378 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 LARP4Q71RC2 724 aaKnown RBP eCLIP7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 GPSM1Q86YR5 675 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 AKR1E2Q96JD6 320 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 ZNF607Q96SK3 696 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 LMAN1LQ9HAT1 526 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 GPR108Q9NPR9 543 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 WASH6PQ9NQA3 447 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 ASB3Q9Y575 518 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 PCDH11XQ9BZA7 1347 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 SCAF11Q99590 1463 aaKnown RBP7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 GPR75-ASB3A0A0A6YYF3 556 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 A0A1W2PPH5 198 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 PHYHO14832 338 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 ALPPL2P10696 532 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 BCL6P41182 706 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 MLF2Q15773 248 aaPredicted RBP7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 PDK4Q16654 411 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 PRPF38BQ5VTL8 546 aaKnown RBP7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 PPP2R2DQ66LE6 453 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 RBM17Q96I25 401 aaKnown RBP7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 TMEM101Q96IK0 257 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 MFSD14AQ96MC6 490 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 RDH12Q96NR8 316 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 DPH1Q9BZG8 443 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 POLLQ9UGP5 575 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 ZDHHC9Q9Y397 364 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 ACTL7BQ9Y614 415 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 PCDH11YQ9BZA8 1340 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 AQP7P3A6NL99 342 aa7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 TMEM210A6NLX4 147 aa7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 XPNPEP2O43895 674 aa7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 GRIN3BO60391 1043 aa7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 UGDHO60701 494 aa7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 UPK1BO75841 260 aa7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 ATP5JP18859 108 aa7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 ICAM3P32942 547 aa7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 AHRP35869 848 aa7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 SMAD4Q13485 552 aaKnown RBP7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 C10orf120Q5SQS8 335 aa7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 OR10K2Q6IF99 312 aa7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 FAM117BQ6P1L5 589 aa7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 APTXQ7Z2E3 356 aaKnown RBP7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 JAMLQ86YT9 394 aa7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 RASGRP3Q8IV61 690 aa7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 FAM83FQ8NEG4 500 aaPredicted RBP7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 ZNF606Q8WXB4 792 aa7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 C20orf24Q9BUV8 137 aa7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 PECRQ9BY49 303 aa7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 LDHAL6BQ9BYZ2 381 aaPredicted RBP7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 ALX4Q9H161 411 aaPredicted RBP7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 RBM12Q9NTZ6 932 aaKnown RBP7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 KLHL9Q9P2J3 617 aa7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 WDR62O43379 1518 aa7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 CROCC2H7BZ55 1655 aa7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 CASTOR2A6NHX0 329 aa7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 CYP26A1O43174 497 aa7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 RNASEH1O60930 286 aaKnown RBP7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 ZNF324O75467 553 aaPredicted RBP7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 SERPINB7O75635 380 aa7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 SC5DO75845 299 aa7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 GLUD1P00367 558 aa7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 NT5EP21589 574 aa7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 CD151P48509 253 aa7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 GSK3AP49840 483 aa7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 PPP1R8Q12972 351 aaKnown RBP7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 SCIMPQ6UWF3 145 aa7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 RDH10Q8IZV5 341 aa7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 YIPF7Q8N8F6 280 aa7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 GDPD1Q8N9F7 314 aa7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 SLC35G2Q8TBE7 412 aa7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 GPR119Q8TDV5 335 aa7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 CHPT1Q8WUD6 406 aa7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 TTTY10Q9BZA0 68 aa7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 OR2B2Q9GZK3 357 aa7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 MTIF3Q9H2K0 278 aaKnown RBP7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 EVA1AQ9H8M9 152 aa7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 ZBTB20Q9HC78 741 aaPredicted RBP7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 GAR1Q9NY12 217 aaKnown RBP7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 NOSIPQ9Y314 301 aaKnown RBP7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 BLOC1S5-TXNDC5H3BN57 136 aa7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 LMX1BO60663 402 aa7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 PEX11AO75192 247 aa7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 ADRB2P07550 413 aa7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 PTH2RP49190 550 aa7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 PRKXP51817 358 aa7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 PDK1Q15118 436 aa7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 MEP1BQ16820 701 aa7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 IL34Q6ZMJ4 242 aa7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 GOLGA7Q7Z5G4 137 aa7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 LINC00523Q86TU6 105 aa7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 LRP11Q86VZ4 500 aa7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 DNAJB8Q8NHS0 232 aa7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 ZFP28Q8NHY6 868 aa7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 RAB37Q96AX2 223 aa7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 EXOSC8Q96B26 276 aaKnown RBP7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 TMEM209Q96SK2 561 aa7.4□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms