RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 ATE1O95260 518 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 LGALS2P05162 132 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 FABP3P05413 133 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 CHRNB1P11230 501 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 TAL1P17542 331 aaPredicted RBP6.2□□□□□ -1.42
VPS35-201ENST00000299138 HOXD10P28358 340 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 ARCN1P48444 511 aaKnown RBP6.2□□□□□ -1.42
VPS35-201ENST00000299138 RAB5CP51148 216 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 TLE1Q04724 770 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 STK11Q15831 433 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 UGT3A2Q3SY77 523 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 UNC50Q53HI1 259 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 RNLSQ5VYX0 342 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 XKR5Q6UX68 686 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 ADGRD2Q7Z7M1 963 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 ZFP82Q8N141 532 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 LINC01465Q8N7H1 131 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 WACQ9BTA9 647 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 DPAGT1Q9H3H5 408 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 RANBP3Q9H6Z4 567 aaPredicted RBP6.2□□□□□ -1.42
VPS35-201ENST00000299138 SCUBE2Q9NQ36 999 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 HCN3Q9P1Z3 774 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 INTS6Q9UL03 887 aaKnown RBP6.2□□□□□ -1.42
VPS35-201ENST00000299138 DNAJC15Q9Y5T4 150 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 FAM170BA6NMN3 283 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 SOCS2O14508 198 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 SEPT4O43236 478 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 RAMP2O60895 175 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 FUCA1P04066 466 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 COL6A1P12109 1028 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 ZNF182P17025 639 aaPredicted RBP6.2□□□□□ -1.42
VPS35-201ENST00000299138 SNRPD2P62316 118 aaKnown RBP6.2□□□□□ -1.42
VPS35-201ENST00000299138 TGM3Q08188 693 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 ZNF460Q14592 562 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 NPTX1Q15818 432 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 MPP7Q5T2T1 576 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 GPR157Q5UAW9 335 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 LRRC66Q68CR7 880 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 NANOGP8Q6NSW7 305 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 BAIAP2L2Q6UXY1 529 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 SERPINA11Q86U17 422 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 TOMM5Q8N4H5 51 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 OR4A15Q8NGL6 344 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 C2orf15Q8WU43 125 aaKnown RBP6.2□□□□□ -1.42
VPS35-201ENST00000299138 PCDHAC1Q9H158 963 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 NANOGQ9H9S0 305 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 ITM2CQ9NQX7 267 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 PAQR5Q9NXK6 330 aaPredicted RBP6.2□□□□□ -1.42
VPS35-201ENST00000299138 TAS2R7Q9NYW3 318 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 AHSPQ9NZD4 102 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 NDOR1Q9UHB4 597 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP6.2□□□□□ -1.42
VPS35-201ENST00000299138 ANXA2P2A6NMY6 339 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 PIP5K1BO14986 540 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 YY2O15391 372 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 CLN5O75503 358 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 PTBP3O95758 552 aaKnown RBP6.2□□□□□ -1.42
VPS35-201ENST00000299138 ANXA2P07355 339 aaKnown RBP6.2□□□□□ -1.42
VPS35-201ENST00000299138 HCKP08631 526 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 PRPS1L1P21108 318 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 PXNP49023 591 aaPredicted RBP6.2□□□□□ -1.42
VPS35-201ENST00000299138 TBX4P57082 545 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 EEF1A2Q05639 463 aaKnown RBP6.2□□□□□ -1.42
VPS35-201ENST00000299138 KCNAB2Q13303 367 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 POU6F1Q14863 301 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 TMEM132BQ14DG7 1078 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 ALG10BQ5I7T1 473 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 C6orf136Q5SQH8 315 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 TMEM198Q66K66 360 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 CES3Q6UWW8 571 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 NAPRTQ6XQN6 538 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 HSDL2Q6YN16 418 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 CPT1CQ8TCG5 803 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 SNX33Q8WV41 574 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 ARL5BQ96KC2 179 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 OR14A2Q96R54 314 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 HEPHQ9BQS7 1158 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 SEMA4BQ9NPR2 832 aaPredicted RBP6.2□□□□□ -1.42
VPS35-201ENST00000299138 PAK6Q9NQU5 681 aaPredicted RBP6.2□□□□□ -1.42
VPS35-201ENST00000299138 A0A1W2PRQ8 180 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 ARRDC5A6NEK1 342 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 SLC16A5O15375 505 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 EGFRP00533 1210 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 CSF2P04141 144 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 MLLT3P42568 568 aaPredicted RBP6.2□□□□□ -1.42
VPS35-201ENST00000299138 ALDH7A1P49419 539 aaKnown RBP6.2□□□□□ -1.42
VPS35-201ENST00000299138 CHRNEQ04844 493 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 TAF1AQ15573 450 aaPredicted RBP6.2□□□□□ -1.42
VPS35-201ENST00000299138 VPS26BQ4G0F5 336 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 C9orf131Q5VYM1 1079 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 ADNP2Q6IQ32 1131 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 C2orf69Q8N8R5 385 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 OR6C4Q8NGE1 309 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 ISYNA1Q9NPH2 558 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 OSER1Q9NX31 292 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 OPTCQ9UBM4 332 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 RNF6Q9Y252 685 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 ANGPTL7O43827 346 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 TPPPO94811 219 aa6.2□□□□□ -1.42
VPS35-201ENST00000299138 HNRNPLP14866 589 aaKnown RBP eCLIP6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms