RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 GAB1Q13480 694 aa15.74■□□□□ 0.11
USP4-201ENST00000265560 ZNF793Q6ZN11 406 aa15.74■□□□□ 0.11
USP4-201ENST00000265560 ZNF570Q96NI8 536 aa15.74■□□□□ 0.11
USP4-201ENST00000265560 OR2A14Q96R47 310 aa15.74■□□□□ 0.11
USP4-201ENST00000265560 CENPKQ9BS16 269 aa15.74■□□□□ 0.11
USP4-201ENST00000265560 SLC6A16Q9GZN6 736 aa15.74■□□□□ 0.11
USP4-201ENST00000265560 MIEF1Q9NQG6 463 aa15.74■□□□□ 0.11
USP4-201ENST00000265560 EVA1BQ9NVM1 165 aa15.74■□□□□ 0.11
USP4-201ENST00000265560 UCKL1Q9NWZ5 548 aa15.74■□□□□ 0.11
USP4-201ENST00000265560 DOLKQ9UPQ8 538 aa15.74■□□□□ 0.11
USP4-201ENST00000265560 ZW10O43264 779 aa15.73■□□□□ 0.11
USP4-201ENST00000265560 ALPPL2P10696 532 aa15.73■□□□□ 0.11
USP4-201ENST00000265560 HPCAL1P37235 193 aa15.73■□□□□ 0.11
USP4-201ENST00000265560 SSR2P43308 183 aa15.73■□□□□ 0.11
USP4-201ENST00000265560 TRAP1Q12931 704 aaKnown RBP15.73■□□□□ 0.11
USP4-201ENST00000265560 DUOXA1Q1HG43 343 aa15.73■□□□□ 0.11
USP4-201ENST00000265560 SFT2D3Q587I9 215 aa15.73■□□□□ 0.11
USP4-201ENST00000265560 ISLR2Q6UXK2 745 aa15.73■□□□□ 0.11
USP4-201ENST00000265560 FBXO30Q8TB52 745 aa15.73■□□□□ 0.11
USP4-201ENST00000265560 DNAJC9Q8WXX5 260 aa15.73■□□□□ 0.11
USP4-201ENST00000265560 NELL1Q92832 810 aa15.73■□□□□ 0.11
USP4-201ENST00000265560 NCLNQ969V3 563 aa15.73■□□□□ 0.11
USP4-201ENST00000265560 EXOSC8Q96B26 276 aaKnown RBP15.73■□□□□ 0.11
USP4-201ENST00000265560 PPCDCQ96CD2 204 aa15.73■□□□□ 0.11
USP4-201ENST00000265560 REEP4Q9H6H4 257 aa15.73■□□□□ 0.11
USP4-201ENST00000265560 STARD5Q9NSY2 213 aa15.73■□□□□ 0.11
USP4-201ENST00000265560 ACTR3BQ9P1U1 418 aa15.73■□□□□ 0.11
USP4-201ENST00000265560 A0A096LPI6 279 aa15.73■□□□□ 0.11
USP4-201ENST00000265560 TRBV5-3A0A0A0MS03 114 aa15.73■□□□□ 0.11
USP4-201ENST00000265560 PRSS51A0A1B0GVH4 220 aa15.73■□□□□ 0.11
USP4-201ENST00000265560 K7ESF4 209 aa15.73■□□□□ 0.11
USP4-201ENST00000265560 CLIC1O00299 241 aa15.73■□□□□ 0.11
USP4-201ENST00000265560 GSTA4O15217 222 aa15.73■□□□□ 0.11
USP4-201ENST00000265560 HCRTR1O43613 425 aa15.73■□□□□ 0.11
USP4-201ENST00000265560 FURINP09958 794 aa15.73■□□□□ 0.11
USP4-201ENST00000265560 ASMTP46597 345 aa15.73■□□□□ 0.11
USP4-201ENST00000265560 EEFSECP57772 596 aaKnown RBP15.73■□□□□ 0.11
USP4-201ENST00000265560 ICA1LQ8NDH6 482 aa15.73■□□□□ 0.11
USP4-201ENST00000265560 ZCCHC10Q8TBK6 192 aa15.73■□□□□ 0.11
USP4-201ENST00000265560 MAL2Q969L2 176 aa15.73■□□□□ 0.11
USP4-201ENST00000265560 FAM120BQ96EK7 910 aaKnown RBP15.73■□□□□ 0.11
USP4-201ENST00000265560 KAT8Q9H7Z6 458 aaKnown RBP15.73■□□□□ 0.11
USP4-201ENST00000265560 ACTR10Q9NZ32 417 aa15.73■□□□□ 0.11
USP4-201ENST00000265560 UTS2RQ9UKP6 389 aa15.73■□□□□ 0.11
USP4-201ENST00000265560 LOC105369274A0A096LPK9 316 aa15.72■□□□□ 0.11
USP4-201ENST00000265560 LOC102723532A0A0G2JNH3 316 aa15.72■□□□□ 0.11
USP4-201ENST00000265560 TCRBV3S1A0A5B6 114 aa15.72■□□□□ 0.11
USP4-201ENST00000265560 DHRS12A0PJE2 317 aa15.72■□□□□ 0.11
USP4-201ENST00000265560 HYAL2Q12891 473 aa15.72■□□□□ 0.11
USP4-201ENST00000265560 PUS10Q3MIT2 529 aaKnown RBP15.72■□□□□ 0.11
USP4-201ENST00000265560 TBCELQ5QJ74 424 aa15.72■□□□□ 0.11
USP4-201ENST00000265560 ZCCHC8Q6NZY4 707 aaKnown RBP15.72■□□□□ 0.11
USP4-201ENST00000265560 OR4N4Q8N0Y3 316 aa15.72■□□□□ 0.11
USP4-201ENST00000265560 OR8J2Q8NGG1 315 aa15.72■□□□□ 0.11
USP4-201ENST00000265560 OR4A15Q8NGL6 344 aa15.72■□□□□ 0.11
USP4-201ENST00000265560 TM4SF18Q96CE8 201 aa15.72■□□□□ 0.11
USP4-201ENST00000265560 CPPED1Q9BRF8 314 aaPredicted RBP15.72■□□□□ 0.11
USP4-201ENST00000265560 FSCN3Q9NQT6 498 aa15.72■□□□□ 0.11
USP4-201ENST00000265560 FBXW2Q9UKT8 454 aa15.72■□□□□ 0.11
USP4-201ENST00000265560 SNX8Q9Y5X2 465 aa15.72■□□□□ 0.11
USP4-201ENST00000265560 ERN1O75460 977 aaKnown RBP15.72■□□□□ 0.11
USP4-201ENST00000265560 CTSBP07858 339 aa15.72■□□□□ 0.11
USP4-201ENST00000265560 NDUFS1P28331 727 aa15.72■□□□□ 0.11
USP4-201ENST00000265560 DEFB110Q30KQ9 67 aa15.72■□□□□ 0.11
USP4-201ENST00000265560 ZNF750Q32MQ0 723 aa15.72■□□□□ 0.11
USP4-201ENST00000265560 MTX3Q5HYI7 312 aa15.72■□□□□ 0.11
USP4-201ENST00000265560 FRMPD2BQ6IN97 320 aa15.72■□□□□ 0.11
USP4-201ENST00000265560 FAM71E1Q6IPT2 247 aa15.72■□□□□ 0.11
USP4-201ENST00000265560 FBXO42Q6P3S6 717 aa15.72■□□□□ 0.11
USP4-201ENST00000265560 FAM9CQ8IZT9 166 aa15.72■□□□□ 0.11
USP4-201ENST00000265560 FLVCR1-AS1Q8TAF5 88 aa15.72■□□□□ 0.11
USP4-201ENST00000265560 CLDN23Q96B33 292 aa15.72■□□□□ 0.11
USP4-201ENST00000265560 IL21RQ9HBE5 538 aa15.72■□□□□ 0.11
USP4-201ENST00000265560 TMEM184CQ9NVA4 438 aa15.72■□□□□ 0.11
USP4-201ENST00000265560 TMEM45AQ9NWC5 275 aa15.72■□□□□ 0.11
USP4-201ENST00000265560 BCAP29Q9UHQ4 241 aa15.72■□□□□ 0.11
USP4-201ENST00000265560 RAPGEFL1Q9UHV5 662 aa15.72■□□□□ 0.11
USP4-201ENST00000265560 A0A1W2PR77 199 aa15.72■□□□□ 0.11
USP4-201ENST00000265560 A0A1W2PS29 197 aa15.72■□□□□ 0.11
USP4-201ENST00000265560 DNAJB6O75190 326 aa15.72■□□□□ 0.11
USP4-201ENST00000265560 NPPAP01160 153 aa15.72■□□□□ 0.11
USP4-201ENST00000265560 C8BP07358 591 aa15.72■□□□□ 0.11
USP4-201ENST00000265560 AQP1P29972 269 aa15.72■□□□□ 0.11
USP4-201ENST00000265560 FNTBP49356 437 aa15.72■□□□□ 0.11
USP4-201ENST00000265560 AQP4P55087 323 aa15.72■□□□□ 0.11
USP4-201ENST00000265560 TOR1AIP1Q5JTV8 583 aa15.72■□□□□ 0.11
USP4-201ENST00000265560 OR8J3Q8NGG0 315 aa15.72■□□□□ 0.11
USP4-201ENST00000265560 RGMAQ96B86 450 aa15.72■□□□□ 0.11
USP4-201ENST00000265560 RNF31Q96EP0 1072 aa15.72■□□□□ 0.11
USP4-201ENST00000265560 RIMS3Q9UJD0 308 aa15.72■□□□□ 0.11
USP4-201ENST00000265560 TRBC2A0A5B9 178 aa15.71■□□□□ 0.11
USP4-201ENST00000265560 CKMT2P17540 419 aa15.71■□□□□ 0.11
USP4-201ENST00000265560 CERS1P27544 350 aa15.71■□□□□ 0.11
USP4-201ENST00000265560 NRF1Q16656 503 aa15.71■□□□□ 0.11
USP4-201ENST00000265560 DDX59Q5T1V6 619 aaKnown RBP eCLIP15.71■□□□□ 0.11
USP4-201ENST00000265560 LRIF1Q5T3J3 769 aa15.71■□□□□ 0.11
USP4-201ENST00000265560 MFSD2AQ8NA29 543 aa15.71■□□□□ 0.11
USP4-201ENST00000265560 RNF145Q96MT1 663 aa15.71■□□□□ 0.11
USP4-201ENST00000265560 PRPF18Q99633 342 aaKnown RBP15.71■□□□□ 0.11
USP4-201ENST00000265560 SLAMF7Q9NQ25 335 aa15.71■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms