RNA–Protein interactions for RNA: ENST00000642137.1

LINC00339-213, long intergenic non-protein coding RNA 339, humanhuman

BASIC

Gene LINC00339, Length 222 nt, Biotype transcribed processed pseudogene, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-213ENST00000642137 TROVE2P10155 538 aaKnown RBP eCLIP11.72□□□□□ -0.53
LINC00339-213ENST00000642137 HNRNPH1P31943 449 aaKnown RBP11.72□□□□□ -0.53
LINC00339-213ENST00000642137 TGM3Q08188 693 aa11.72□□□□□ -0.53
LINC00339-213ENST00000642137 FAM53BQ14153 422 aa11.72□□□□□ -0.53
LINC00339-213ENST00000642137 PDCD2Q16342 344 aaPredicted RBP11.72□□□□□ -0.53
LINC00339-213ENST00000642137 IMPG1Q17R60 797 aa11.72□□□□□ -0.53
LINC00339-213ENST00000642137 MUM1Q2TAK8 710 aa11.72□□□□□ -0.53
LINC00339-213ENST00000642137 SMU1Q2TAY7 513 aa11.72□□□□□ -0.53
LINC00339-213ENST00000642137 XKR7Q5GH72 579 aa11.72□□□□□ -0.53
LINC00339-213ENST00000642137 TOR1AIP1Q5JTV8 583 aa11.72□□□□□ -0.53
LINC00339-213ENST00000642137 DCAF12Q5T6F0 453 aa11.72□□□□□ -0.53
LINC00339-213ENST00000642137 NIPAL1Q6NVV3 410 aa11.72□□□□□ -0.53
LINC00339-213ENST00000642137 EPGNQ6UW88 154 aa11.72□□□□□ -0.53
LINC00339-213ENST00000642137 ABHD13Q7L211 337 aa11.72□□□□□ -0.53
LINC00339-213ENST00000642137 METTL4Q8N3J2 472 aa11.72□□□□□ -0.53
LINC00339-213ENST00000642137 OR2L5Q8NG80 312 aa11.72□□□□□ -0.53
LINC00339-213ENST00000642137 UTP15Q8TED0 518 aaKnown RBP11.72□□□□□ -0.53
LINC00339-213ENST00000642137 STON2Q8WXE9 905 aa11.72□□□□□ -0.53
LINC00339-213ENST00000642137 GAL3ST3Q96A11 431 aa11.72□□□□□ -0.53
LINC00339-213ENST00000642137 C19orf60Q96EN9 201 aa11.72□□□□□ -0.53
LINC00339-213ENST00000642137 C3orf30Q96M34 536 aa11.72□□□□□ -0.53
LINC00339-213ENST00000642137 TEFMQ96QE5 360 aaKnown RBP11.72□□□□□ -0.53
LINC00339-213ENST00000642137 F2RL3Q96RI0 385 aa11.72□□□□□ -0.53
LINC00339-213ENST00000642137 TBCDQ9BTW9 1192 aa11.72□□□□□ -0.53
LINC00339-213ENST00000642137 TRIM55Q9BYV6 548 aa11.72□□□□□ -0.53
LINC00339-213ENST00000642137 NUF2Q9BZD4 464 aa11.72□□□□□ -0.53
LINC00339-213ENST00000642137 ASPSCR1Q9BZE9 553 aa11.72□□□□□ -0.53
LINC00339-213ENST00000642137 ACPTQ9BZG2 426 aa11.72□□□□□ -0.53
LINC00339-213ENST00000642137 AICDAQ9GZX7 198 aa11.72□□□□□ -0.53
LINC00339-213ENST00000642137 APMAPQ9HDC9 416 aa11.72□□□□□ -0.53
LINC00339-213ENST00000642137 PRDM7Q9NQW5 492 aa11.72□□□□□ -0.53
LINC00339-213ENST00000642137 STARD5Q9NSY2 213 aa11.72□□□□□ -0.53
LINC00339-213ENST00000642137 RIC8BQ9NVN3 520 aa11.72□□□□□ -0.53
LINC00339-213ENST00000642137 IRAK4Q9NWZ3 460 aa11.72□□□□□ -0.53
LINC00339-213ENST00000642137 SIRT5Q9NXA8 310 aa11.72□□□□□ -0.53
LINC00339-213ENST00000642137 SLC12A4Q9UP95 1085 aa11.72□□□□□ -0.53
LINC00339-213ENST00000642137 PCDHB3Q9Y5E6 796 aa11.72□□□□□ -0.53
LINC00339-213ENST00000642137 PCDHGA8Q9Y5G5 932 aa11.72□□□□□ -0.53
LINC00339-213ENST00000642137 PCDHGA3Q9Y5H0 932 aa11.72□□□□□ -0.53
LINC00339-213ENST00000642137 SPTBP11277 2137 aa11.72□□□□□ -0.53
LINC00339-213ENST00000642137 ZNF749O43361 778 aa11.71□□□□□ -0.53
LINC00339-213ENST00000642137 SHOX2O60902 331 aaPredicted RBP11.71□□□□□ -0.53
LINC00339-213ENST00000642137 STATHP02808 62 aa11.71□□□□□ -0.53
LINC00339-213ENST00000642137 JUNP05412 331 aaKnown RBP11.71□□□□□ -0.53
LINC00339-213ENST00000642137 ALOX12P18054 663 aa11.71□□□□□ -0.53
LINC00339-213ENST00000642137 ITIH1P19827 911 aa11.71□□□□□ -0.53
LINC00339-213ENST00000642137 ETV5P41161 510 aa11.71□□□□□ -0.53
LINC00339-213ENST00000642137 TSFMP43897 325 aaKnown RBP11.71□□□□□ -0.53
LINC00339-213ENST00000642137 ID4P47928 161 aa11.71□□□□□ -0.53
LINC00339-213ENST00000642137 MAPK10P53779 464 aa11.71□□□□□ -0.53
LINC00339-213ENST00000642137 SEC24CP53992 1094 aa11.71□□□□□ -0.53
LINC00339-213ENST00000642137 HMGCS1Q01581 520 aa11.71□□□□□ -0.53
LINC00339-213ENST00000642137 TBL3Q12788 808 aaKnown RBP11.71□□□□□ -0.53
LINC00339-213ENST00000642137 HERC3Q15034 1050 aa11.71□□□□□ -0.53
LINC00339-213ENST00000642137 KIAA0040Q15053 153 aa11.71□□□□□ -0.53
LINC00339-213ENST00000642137 AP5B1Q2VPB7 878 aa11.71□□□□□ -0.53
LINC00339-213ENST00000642137 TMEM164Q5U3C3 297 aa11.71□□□□□ -0.53
LINC00339-213ENST00000642137 OR4C11Q6IEV9 310 aa11.71□□□□□ -0.53
LINC00339-213ENST00000642137 RHBDD2Q6NTF9 364 aa11.71□□□□□ -0.53
LINC00339-213ENST00000642137 PWWP2BQ6NUJ5 590 aa11.71□□□□□ -0.53
LINC00339-213ENST00000642137 TRIM40Q6P9F5 258 aa11.71□□□□□ -0.53
LINC00339-213ENST00000642137 ABHD17CQ6PCB6 329 aa11.71□□□□□ -0.53
LINC00339-213ENST00000642137 UBE3DQ7Z6J8 389 aa11.71□□□□□ -0.53
LINC00339-213ENST00000642137 OR2T11Q8NH01 316 aa11.71□□□□□ -0.53
LINC00339-213ENST00000642137 MVB12AQ96EY5 273 aa11.71□□□□□ -0.53
LINC00339-213ENST00000642137 MAELQ96JY0 434 aaKnown RBP11.71□□□□□ -0.53
LINC00339-213ENST00000642137 PPP3R2Q96LZ3 170 aa11.71□□□□□ -0.53
LINC00339-213ENST00000642137 HBEGFQ99075 208 aa11.71□□□□□ -0.53
LINC00339-213ENST00000642137 NDC1Q9BTX1 674 aa11.71□□□□□ -0.53
LINC00339-213ENST00000642137 DDA1Q9BW61 102 aa11.71□□□□□ -0.53
LINC00339-213ENST00000642137 ROGDIQ9GZN7 287 aa11.71□□□□□ -0.53
LINC00339-213ENST00000642137 EPN3Q9H201 632 aa11.71□□□□□ -0.53
LINC00339-213ENST00000642137 POLR1BQ9H9Y6 1135 aa11.71□□□□□ -0.53
LINC00339-213ENST00000642137 CLK4Q9HAZ1 481 aaKnown RBP11.71□□□□□ -0.53
LINC00339-213ENST00000642137 KCNK13Q9HB14 408 aa11.71□□□□□ -0.53
LINC00339-213ENST00000642137 CUTCQ9NTM9 273 aa11.71□□□□□ -0.53
LINC00339-213ENST00000642137 C1orf109Q9NX04 203 aa11.71□□□□□ -0.53
LINC00339-213ENST00000642137 PISDQ9UG56 409 aa11.71□□□□□ -0.53
LINC00339-213ENST00000642137 ADAM29Q9UKF5 820 aa11.71□□□□□ -0.53
LINC00339-213ENST00000642137 SRPK3Q9UPE1 567 aa11.71□□□□□ -0.53
LINC00339-213ENST00000642137 SATB2Q9UPW6 733 aa11.71□□□□□ -0.53
LINC00339-213ENST00000642137 PTGDR2Q9Y5Y4 395 aa11.71□□□□□ -0.53
LINC00339-213ENST00000642137 SCN3AQ9NY46 2000 aa11.7□□□□□ -0.54
LINC00339-213ENST00000642137 A0A088AWK7 358 aa11.7□□□□□ -0.54
LINC00339-213ENST00000642137 A0A1W2PNU3 283 aaPredicted RBP11.7□□□□□ -0.54
LINC00339-213ENST00000642137 FAM149AA5PLN7 773 aa11.7□□□□□ -0.54
LINC00339-213ENST00000642137 PLPP1O14494 284 aa11.7□□□□□ -0.54
LINC00339-213ENST00000642137 SDHDO14521 159 aa11.7□□□□□ -0.54
LINC00339-213ENST00000642137 DSCR3O14972 297 aa11.7□□□□□ -0.54
LINC00339-213ENST00000642137 LSM1O15116 133 aaKnown RBP11.7□□□□□ -0.54
LINC00339-213ENST00000642137 ERI3O43414 337 aaKnown RBP11.7□□□□□ -0.54
LINC00339-213ENST00000642137 FOXS1O43638 330 aa11.7□□□□□ -0.54
LINC00339-213ENST00000642137 HYAL3O43820 417 aaPredicted RBP11.7□□□□□ -0.54
LINC00339-213ENST00000642137 SH3BGRLO75368 114 aa11.7□□□□□ -0.54
LINC00339-213ENST00000642137 SEC22BO75396 215 aa11.7□□□□□ -0.54
LINC00339-213ENST00000642137 SCRG1O75711 98 aa11.7□□□□□ -0.54
LINC00339-213ENST00000642137 PRR35P0CG20 571 aa11.7□□□□□ -0.54
LINC00339-213ENST00000642137 ZNF888P0CJ79 500 aaPredicted RBP11.7□□□□□ -0.54
LINC00339-213ENST00000642137 ZNF10P21506 573 aaPredicted RBP11.7□□□□□ -0.54
LINC00339-213ENST00000642137 DRD4P21917 467 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms