RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 TTLQ8NG68 377 aa16.92■□□□□ 0.3
CLN3-247ENST00000636351 ATP6V1E2Q96A05 226 aa16.92■□□□□ 0.3
CLN3-247ENST00000636351 APOPT1Q96IL0 206 aa16.92■□□□□ 0.3
CLN3-247ENST00000636351 SMC6Q96SB8 1091 aa16.92■□□□□ 0.3
CLN3-247ENST00000636351 C17orf62Q9BQA9 187 aa16.92■□□□□ 0.3
CLN3-247ENST00000636351 ING2Q9H160 280 aa16.92■□□□□ 0.3
CLN3-247ENST00000636351 EHD1Q9H4M9 534 aa16.92■□□□□ 0.3
CLN3-247ENST00000636351 ACTR8Q9H981 624 aa16.92■□□□□ 0.3
CLN3-247ENST00000636351 ARGLU1Q9NWB6 273 aaPredicted RBP16.92■□□□□ 0.3
CLN3-247ENST00000636351 ZFP69BQ9UJL9 534 aa16.92■□□□□ 0.3
CLN3-247ENST00000636351 FARSAQ9Y285 508 aaKnown RBP16.92■□□□□ 0.3
CLN3-247ENST00000636351 PCDHGA9Q9Y5G4 932 aaKnown RBP16.92■□□□□ 0.3
CLN3-247ENST00000636351 MAU2Q9Y6X3 613 aa16.92■□□□□ 0.3
CLN3-247ENST00000636351 E2F3O00716 465 aa16.91■□□□□ 0.3
CLN3-247ENST00000636351 CTIFO43310 598 aaKnown RBP16.91■□□□□ 0.3
CLN3-247ENST00000636351 MED26O95402 600 aa16.91■□□□□ 0.3
CLN3-247ENST00000636351 SBK3P0C264 359 aa16.91■□□□□ 0.3
CLN3-247ENST00000636351 CRHR1P34998 444 aa16.91■□□□□ 0.3
CLN3-247ENST00000636351 AHRP35869 848 aa16.91■□□□□ 0.3
CLN3-247ENST00000636351 GCGRP47871 477 aa16.91■□□□□ 0.3
CLN3-247ENST00000636351 SLC18A2Q05940 514 aa16.91■□□□□ 0.3
CLN3-247ENST00000636351 LAPTM5Q13571 262 aa16.91■□□□□ 0.3
CLN3-247ENST00000636351 RBBP7Q16576 425 aa16.91■□□□□ 0.3
CLN3-247ENST00000636351 CCDC153Q494R4 210 aa16.91■□□□□ 0.3
CLN3-247ENST00000636351 FHL5Q5TD97 284 aa16.91■□□□□ 0.3
CLN3-247ENST00000636351 MLIPQ5VWP3 458 aa16.91■□□□□ 0.3
CLN3-247ENST00000636351 LCN10Q6JVE6 187 aa16.91■□□□□ 0.3
CLN3-247ENST00000636351 METTL2BQ6P1Q9 378 aaKnown RBP16.91■□□□□ 0.3
CLN3-247ENST00000636351 LRIG3Q6UXM1 1119 aa16.91■□□□□ 0.3
CLN3-247ENST00000636351 SH2D5Q6ZV89 423 aa16.91■□□□□ 0.3
CLN3-247ENST00000636351 CROCCP2Q86T23 111 aa16.91■□□□□ 0.3
CLN3-247ENST00000636351 SLC22A9Q8IVM8 553 aa16.91■□□□□ 0.3
CLN3-247ENST00000636351 DTWD1Q8N5C7 304 aa16.91■□□□□ 0.3
CLN3-247ENST00000636351 MYRIPQ8NFW9 859 aa16.91■□□□□ 0.3
CLN3-247ENST00000636351 PPP4R1Q8TF05 950 aa16.91■□□□□ 0.3
CLN3-247ENST00000636351 SARGQ9BW04 601 aa16.91■□□□□ 0.3
CLN3-247ENST00000636351 DRC3Q9H069 523 aa16.91■□□□□ 0.3
CLN3-247ENST00000636351 ENAMQ9NRM1 1142 aa16.91■□□□□ 0.3
CLN3-247ENST00000636351 PCTPQ9UKL6 214 aa16.91■□□□□ 0.3
CLN3-247ENST00000636351 EMCNQ9ULC0 261 aa16.91■□□□□ 0.3
CLN3-247ENST00000636351 DLX3O60479 287 aa16.9■□□□□ 0.3
CLN3-247ENST00000636351 PLIN3O60664 434 aa16.9■□□□□ 0.3
CLN3-247ENST00000636351 PRAMEF4O60810 478 aa16.9■□□□□ 0.3
CLN3-247ENST00000636351 SPAG7O75391 227 aa16.9■□□□□ 0.3
CLN3-247ENST00000636351 SORBS2O94875 1100 aaKnown RBP16.9■□□□□ 0.3
CLN3-247ENST00000636351 PROCP04070 461 aa16.9■□□□□ 0.3
CLN3-247ENST00000636351 PIM1P11309 404 aaPredicted RBP16.9■□□□□ 0.3
CLN3-247ENST00000636351 PCNAP12004 261 aa16.9■□□□□ 0.3
CLN3-247ENST00000636351 FBLP22087 321 aaKnown RBP16.9■□□□□ 0.3
CLN3-247ENST00000636351 OR1D4P47884 311 aa16.9■□□□□ 0.3
CLN3-247ENST00000636351 CCNG1P51959 295 aa16.9■□□□□ 0.3
CLN3-247ENST00000636351 EMP3P54852 163 aa16.9■□□□□ 0.3
CLN3-247ENST00000636351 NCF4Q15080 339 aa16.9■□□□□ 0.3
CLN3-247ENST00000636351 TBCCQ15814 346 aa16.9■□□□□ 0.3
CLN3-247ENST00000636351 PRAMEF9Q5VWM5 478 aa16.9■□□□□ 0.3
CLN3-247ENST00000636351 ZNF385CQ66K41 422 aaPredicted RBP16.9■□□□□ 0.3
CLN3-247ENST00000636351 PRMT9Q6P2P2 845 aa16.9■□□□□ 0.3
CLN3-247ENST00000636351 ZNF517Q6ZMY9 492 aaPredicted RBP16.9■□□□□ 0.3
CLN3-247ENST00000636351 IQCKQ8N0W5 287 aa16.9■□□□□ 0.3
CLN3-247ENST00000636351 TMEM151AQ8N4L1 468 aa16.9■□□□□ 0.3
CLN3-247ENST00000636351 ENDOVQ8N8Q3 282 aaKnown RBP16.9■□□□□ 0.3
CLN3-247ENST00000636351 ANKRD53Q8N9V6 530 aa16.9■□□□□ 0.3
CLN3-247ENST00000636351 KCT2Q8NC54 265 aa16.9■□□□□ 0.3
CLN3-247ENST00000636351 TRPV3Q8NET8 790 aa16.9■□□□□ 0.3
CLN3-247ENST00000636351 ZDHHC19Q8WVZ1 309 aaPredicted RBP16.9■□□□□ 0.3
CLN3-247ENST00000636351 MMABQ96EY8 250 aaPredicted RBP16.9■□□□□ 0.3
CLN3-247ENST00000636351 NSUN5Q96P11 429 aaKnown RBP16.9■□□□□ 0.3
CLN3-247ENST00000636351 PITHD1Q9GZP4 211 aaPredicted RBP16.9■□□□□ 0.3
CLN3-247ENST00000636351 C12orf65Q9H3J6 166 aaKnown RBP16.9■□□□□ 0.3
CLN3-247ENST00000636351 NOL11Q9H8H0 719 aaKnown RBP16.9■□□□□ 0.3
CLN3-247ENST00000636351 IPPKQ9H8X2 491 aa16.9■□□□□ 0.3
CLN3-247ENST00000636351 MLXIPLQ9NP71 852 aa16.9■□□□□ 0.3
CLN3-247ENST00000636351 MKS1Q9NXB0 559 aa16.9■□□□□ 0.3
CLN3-247ENST00000636351 MID2Q9UJV3 735 aa16.9■□□□□ 0.3
CLN3-247ENST00000636351 CDC14AQ9UNH5 594 aa16.9■□□□□ 0.3
CLN3-247ENST00000636351 PADI2Q9Y2J8 665 aa16.9■□□□□ 0.3
CLN3-247ENST00000636351 FER1L5A0AVI2 2057 aa16.9■□□□□ 0.3
CLN3-247ENST00000636351 A0A0A6YYC8 382 aaPredicted RBP16.89■□□□□ 0.29
CLN3-247ENST00000636351 ANKDD1BA6NHY2 528 aa16.89■□□□□ 0.29
CLN3-247ENST00000636351 GOLGA6L10A6NI86 522 aa16.89■□□□□ 0.29
CLN3-247ENST00000636351 I3L1I5 382 aaPredicted RBP16.89■□□□□ 0.29
CLN3-247ENST00000636351 PRPF4O43172 522 aaKnown RBP eCLIP16.89■□□□□ 0.29
CLN3-247ENST00000636351 RPS17P08708 135 aaKnown RBP16.89■□□□□ 0.29
CLN3-247ENST00000636351 MYZAPP0CAP1 466 aa16.89■□□□□ 0.29
CLN3-247ENST00000636351 IL1RNP18510 177 aa16.89■□□□□ 0.29
CLN3-247ENST00000636351 CD22P20273 847 aa16.89■□□□□ 0.29
CLN3-247ENST00000636351 HNF4AP41235 474 aa16.89■□□□□ 0.29
CLN3-247ENST00000636351 AVPR1BP47901 424 aa16.89■□□□□ 0.29
CLN3-247ENST00000636351 HERVK_113P63132 956 aa16.89■□□□□ 0.29
CLN3-247ENST00000636351 PWP1Q13610 501 aa16.89■□□□□ 0.29
CLN3-247ENST00000636351 TOR1AIP1Q5JTV8 583 aa16.89■□□□□ 0.29
CLN3-247ENST00000636351 FAM69BQ5VUD6 431 aa16.89■□□□□ 0.29
CLN3-247ENST00000636351 GRHL2Q6ISB3 625 aa16.89■□□□□ 0.29
CLN3-247ENST00000636351 TMEM214Q6NUQ4 689 aaKnown RBP16.89■□□□□ 0.29
CLN3-247ENST00000636351 MED27Q6P2C8 311 aa16.89■□□□□ 0.29
CLN3-247ENST00000636351 ZYG11AQ6WRX3 759 aa16.89■□□□□ 0.29
CLN3-247ENST00000636351 RPS27LQ71UM5 84 aaKnown RBP16.89■□□□□ 0.29
CLN3-247ENST00000636351 NT5CQ8TCD5 201 aa16.89■□□□□ 0.29
CLN3-247ENST00000636351 ADAMTS17Q8TE56 1095 aa16.89■□□□□ 0.29
CLN3-247ENST00000636351 UBE2E3Q969T4 207 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms