RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 SH3BGRLO75368 114 aa13.46□□□□□ -0.25
SHKBP1-217ENST00000598558 CLEC3AO75596 197 aa13.46□□□□□ -0.25
SHKBP1-217ENST00000598558 NSA2O95478 260 aaKnown RBP13.46□□□□□ -0.25
SHKBP1-217ENST00000598558 RECKO95980 971 aa13.46□□□□□ -0.25
SHKBP1-217ENST00000598558 ALBP02768 609 aa13.46□□□□□ -0.25
SHKBP1-217ENST00000598558 ZGLP1P0C6A0 271 aa13.46□□□□□ -0.25
SHKBP1-217ENST00000598558 SLC35G6P0C7Q6 338 aa13.46□□□□□ -0.25
SHKBP1-217ENST00000598558 ALOX12P18054 663 aa13.46□□□□□ -0.25
SHKBP1-217ENST00000598558 TAC1P20366 129 aa13.46□□□□□ -0.25
SHKBP1-217ENST00000598558 IMPDH1P20839 514 aa13.46□□□□□ -0.25
SHKBP1-217ENST00000598558 CCR10P46092 362 aa13.46□□□□□ -0.25
SHKBP1-217ENST00000598558 CCT5P48643 541 aa13.46□□□□□ -0.25
SHKBP1-217ENST00000598558 NEK2P51955 445 aa13.46□□□□□ -0.25
SHKBP1-217ENST00000598558 OLR1P78380 273 aa13.46□□□□□ -0.25
SHKBP1-217ENST00000598558 LAPTM5Q13571 262 aa13.46□□□□□ -0.25
SHKBP1-217ENST00000598558 NDUFA9Q16795 377 aa13.46□□□□□ -0.25
SHKBP1-217ENST00000598558 UGT8Q16880 541 aa13.46□□□□□ -0.25
SHKBP1-217ENST00000598558 DEFB109BQ30KR1 87 aa13.46□□□□□ -0.25
SHKBP1-217ENST00000598558 ADPRMQ3LIE5 342 aa13.46□□□□□ -0.25
SHKBP1-217ENST00000598558 DEFB134Q4QY38 66 aa13.46□□□□□ -0.25
SHKBP1-217ENST00000598558 CRTC2Q53ET0 693 aaPredicted RBP13.46□□□□□ -0.25
SHKBP1-217ENST00000598558 PPP1R32Q7Z5V6 425 aa13.46□□□□□ -0.25
SHKBP1-217ENST00000598558 EXOC3L1Q86VI1 746 aa13.46□□□□□ -0.25
SHKBP1-217ENST00000598558 ZC3H7AQ8IWR0 971 aaKnown RBP13.46□□□□□ -0.25
SHKBP1-217ENST00000598558 TBC1D19Q8N5T2 526 aa13.46□□□□□ -0.25
SHKBP1-217ENST00000598558 ZSCAN1Q8NBB4 408 aa13.46□□□□□ -0.25
SHKBP1-217ENST00000598558 OR2Y1Q8NGV0 311 aa13.46□□□□□ -0.25
SHKBP1-217ENST00000598558 TRPC4APQ8TEL6 797 aa13.46□□□□□ -0.25
SHKBP1-217ENST00000598558 MS4A6EQ96DS6 147 aa13.46□□□□□ -0.25
SHKBP1-217ENST00000598558 QRFPRQ96P65 431 aa13.46□□□□□ -0.25
SHKBP1-217ENST00000598558 BBC3Q96PG8 261 aaPredicted RBP13.46□□□□□ -0.25
SHKBP1-217ENST00000598558 F2RL3Q96RI0 385 aa13.46□□□□□ -0.25
SHKBP1-217ENST00000598558 NTMT1Q9BV86 223 aa13.46□□□□□ -0.25
SHKBP1-217ENST00000598558 PITHD1Q9GZP4 211 aaPredicted RBP13.46□□□□□ -0.25
SHKBP1-217ENST00000598558 ACTR8Q9H981 624 aa13.46□□□□□ -0.25
SHKBP1-217ENST00000598558 MKS1Q9NXB0 559 aa13.46□□□□□ -0.25
SHKBP1-217ENST00000598558 HCN3Q9P1Z3 774 aa13.46□□□□□ -0.25
SHKBP1-217ENST00000598558 TRPC4Q9UBN4 977 aa13.46□□□□□ -0.25
SHKBP1-217ENST00000598558 GPN3Q9UHW5 284 aaPredicted RBP13.46□□□□□ -0.25
SHKBP1-217ENST00000598558 GRID1Q9ULK0 1009 aa13.46□□□□□ -0.25
SHKBP1-217ENST00000598558 CDC14AQ9UNH5 594 aa13.46□□□□□ -0.25
SHKBP1-217ENST00000598558 CACNA1BQ00975 2339 aa13.45□□□□□ -0.26
SHKBP1-217ENST00000598558 ANKDD1BA6NHY2 528 aa13.45□□□□□ -0.26
SHKBP1-217ENST00000598558 TYROBPO43914 113 aa13.45□□□□□ -0.26
SHKBP1-217ENST00000598558 TGFB1P01137 390 aa13.45□□□□□ -0.26
SHKBP1-217ENST00000598558 PIM1P11309 404 aaPredicted RBP13.45□□□□□ -0.26
SHKBP1-217ENST00000598558 PCNAP12004 261 aa13.45□□□□□ -0.26
SHKBP1-217ENST00000598558 HERVK_113P63132 956 aa13.45□□□□□ -0.26
SHKBP1-217ENST00000598558 CLCQ05315 142 aa13.45□□□□□ -0.26
SHKBP1-217ENST00000598558 KLC1Q07866 573 aa13.45□□□□□ -0.26
SHKBP1-217ENST00000598558 RGS1Q08116 209 aa13.45□□□□□ -0.26
SHKBP1-217ENST00000598558 RUNX2Q13950 521 aa13.45□□□□□ -0.26
SHKBP1-217ENST00000598558 ZRSR2Q15696 482 aaKnown RBP13.45□□□□□ -0.26
SHKBP1-217ENST00000598558 CPSF6Q16630 551 aaKnown RBP eCLIP13.45□□□□□ -0.26
SHKBP1-217ENST00000598558 CEP85LQ5SZL2 805 aa13.45□□□□□ -0.26
SHKBP1-217ENST00000598558 LIPJQ5W064 366 aa13.45□□□□□ -0.26
SHKBP1-217ENST00000598558 LETMD1Q6P1Q0 360 aa13.45□□□□□ -0.26
SHKBP1-217ENST00000598558 MED27Q6P2C8 311 aa13.45□□□□□ -0.26
SHKBP1-217ENST00000598558 MYLK4Q86YV6 388 aaPredicted RBP13.45□□□□□ -0.26
SHKBP1-217ENST00000598558 CNPY4Q8N129 248 aa13.45□□□□□ -0.26
SHKBP1-217ENST00000598558 EXD3Q8N9H8 876 aa13.45□□□□□ -0.26
SHKBP1-217ENST00000598558 ARMC2Q8NEN0 867 aa13.45□□□□□ -0.26
SHKBP1-217ENST00000598558 OR4F6Q8NGB9 312 aa13.45□□□□□ -0.26
SHKBP1-217ENST00000598558 HUS1BQ8NHY5 278 aa13.45□□□□□ -0.26
SHKBP1-217ENST00000598558 WDR20Q8TBZ3 569 aa13.45□□□□□ -0.26
SHKBP1-217ENST00000598558 CCT6BQ92526 530 aa13.45□□□□□ -0.26
SHKBP1-217ENST00000598558 MTFMTQ96DP5 389 aaKnown RBP13.45□□□□□ -0.26
SHKBP1-217ENST00000598558 L3HYPDHQ96EM0 354 aa13.45□□□□□ -0.26
SHKBP1-217ENST00000598558 APOPT1Q96IL0 206 aa13.45□□□□□ -0.26
SHKBP1-217ENST00000598558 YIPF2Q9BWQ6 316 aa13.45□□□□□ -0.26
SHKBP1-217ENST00000598558 ERVK-6Q9BXR3 956 aa13.45□□□□□ -0.26
SHKBP1-217ENST00000598558 MS4A8Q9BY19 250 aa13.45□□□□□ -0.26
SHKBP1-217ENST00000598558 FAM117AQ9C073 453 aa13.45□□□□□ -0.26
SHKBP1-217ENST00000598558 GSTO2Q9H4Y5 243 aa13.45□□□□□ -0.26
SHKBP1-217ENST00000598558 WDR54Q9H977 334 aa13.45□□□□□ -0.26
SHKBP1-217ENST00000598558 ANKHQ9HCJ1 492 aa13.45□□□□□ -0.26
SHKBP1-217ENST00000598558 MGAQ8IWI9 3026 aa13.45□□□□□ -0.26
SHKBP1-217ENST00000598558 LOC400499M0QZD8 3231 aa13.44□□□□□ -0.26
SHKBP1-217ENST00000598558 H0YIG0 161 aa13.44□□□□□ -0.26
SHKBP1-217ENST00000598558 H0YIV9 168 aa13.44□□□□□ -0.26
SHKBP1-217ENST00000598558 SAP18O00422 153 aaKnown RBP13.44□□□□□ -0.26
SHKBP1-217ENST00000598558 RTCAO00442 366 aaKnown RBP13.44□□□□□ -0.26
SHKBP1-217ENST00000598558 UBFD1O14562 309 aaKnown RBP13.44□□□□□ -0.26
SHKBP1-217ENST00000598558 CHST10O43529 356 aa13.44□□□□□ -0.26
SHKBP1-217ENST00000598558 SUPT7LO94864 414 aa13.44□□□□□ -0.26
SHKBP1-217ENST00000598558 BMP10O95393 424 aa13.44□□□□□ -0.26
SHKBP1-217ENST00000598558 CLDN9O95484 217 aa13.44□□□□□ -0.26
SHKBP1-217ENST00000598558 ETHE1O95571 254 aa13.44□□□□□ -0.26
SHKBP1-217ENST00000598558 MYL2P10916 166 aa13.44□□□□□ -0.26
SHKBP1-217ENST00000598558 CPA3P15088 417 aa13.44□□□□□ -0.26
SHKBP1-217ENST00000598558 OTX2P32243 289 aa13.44□□□□□ -0.26
SHKBP1-217ENST00000598558 FOLR3P41439 243 aa13.44□□□□□ -0.26
SHKBP1-217ENST00000598558 AVPR1BP47901 424 aa13.44□□□□□ -0.26
SHKBP1-217ENST00000598558 CCNG1P51959 295 aa13.44□□□□□ -0.26
SHKBP1-217ENST00000598558 PLA2G16P53816 162 aa13.44□□□□□ -0.26
SHKBP1-217ENST00000598558 BTN3A2P78410 334 aa13.44□□□□□ -0.26
SHKBP1-217ENST00000598558 MC1RQ01726 317 aa13.44□□□□□ -0.26
SHKBP1-217ENST00000598558 MPP2Q14168 576 aa13.44□□□□□ -0.26
SHKBP1-217ENST00000598558 SSPNQ14714 243 aa13.44□□□□□ -0.26
SHKBP1-217ENST00000598558 PCLAFQ15004 111 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms