RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 SNX15Q9NRS6 342 aa14.28□□□□□ -0.12
TRIM28-205ENST00000595028 DNAJC11Q9NVH1 559 aa14.28□□□□□ -0.12
TRIM28-205ENST00000595028 GPRC5BQ9NZH0 403 aa14.28□□□□□ -0.12
TRIM28-205ENST00000595028 CD274Q9NZQ7 290 aa14.28□□□□□ -0.12
TRIM28-205ENST00000595028 MKL2Q9ULH7 1088 aa14.28□□□□□ -0.12
TRIM28-205ENST00000595028 CSMD1Q96PZ7 3565 aa14.28□□□□□ -0.12
TRIM28-205ENST00000595028 CPAMD8Q8IZJ3 1885 aa14.27□□□□□ -0.12
TRIM28-205ENST00000595028 LOC102723996A0A087X1L8 192 aa14.27□□□□□ -0.13
TRIM28-205ENST00000595028 IGHV1-45A0A0A0MS14 117 aa14.27□□□□□ -0.13
TRIM28-205ENST00000595028 NSG1A0A0A6YYJ2 146 aa14.27□□□□□ -0.13
TRIM28-205ENST00000595028 GALR3O60755 368 aaPredicted RBP14.27□□□□□ -0.13
TRIM28-205ENST00000595028 KERAO60938 352 aa14.27□□□□□ -0.13
TRIM28-205ENST00000595028 STK16O75716 305 aa14.27□□□□□ -0.13
TRIM28-205ENST00000595028 S100BP04271 92 aaPredicted RBP14.27□□□□□ -0.13
TRIM28-205ENST00000595028 ZNF888P0CJ79 500 aaPredicted RBP14.27□□□□□ -0.13
TRIM28-205ENST00000595028 C8orf89P0DMQ9 161 aa14.27□□□□□ -0.13
TRIM28-205ENST00000595028 C1GALT1C1LP0DN25 315 aa14.27□□□□□ -0.13
TRIM28-205ENST00000595028 HSPA7P48741 367 aa14.27□□□□□ -0.13
TRIM28-205ENST00000595028 SERPINB8P50452 374 aa14.27□□□□□ -0.13
TRIM28-205ENST00000595028 UAP1Q16222 522 aaPredicted RBP14.27□□□□□ -0.13
TRIM28-205ENST00000595028 PDK4Q16654 411 aa14.27□□□□□ -0.13
TRIM28-205ENST00000595028 MINDY4Q4G0A6 757 aa14.27□□□□□ -0.13
TRIM28-205ENST00000595028 DEFB134Q4QY38 66 aa14.27□□□□□ -0.13
TRIM28-205ENST00000595028 FBXO48Q5FWF7 155 aa14.27□□□□□ -0.13
TRIM28-205ENST00000595028 MROH9Q5TGP6 573 aa14.27□□□□□ -0.13
TRIM28-205ENST00000595028 NIPAL1Q6NVV3 410 aa14.27□□□□□ -0.13
TRIM28-205ENST00000595028 ABHD13Q7L211 337 aa14.27□□□□□ -0.13
TRIM28-205ENST00000595028 NDUFAF7Q7L592 441 aa14.27□□□□□ -0.13
TRIM28-205ENST00000595028 ISCA2Q86U28 154 aa14.27□□□□□ -0.13
TRIM28-205ENST00000595028 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP14.27□□□□□ -0.13
TRIM28-205ENST00000595028 CENPLQ8N0S6 344 aaPredicted RBP14.27□□□□□ -0.13
TRIM28-205ENST00000595028 TRPV3Q8NET8 790 aa14.27□□□□□ -0.13
TRIM28-205ENST00000595028 STAG3L4Q8TBR4 150 aa14.27□□□□□ -0.13
TRIM28-205ENST00000595028 ESAMQ96AP7 390 aa14.27□□□□□ -0.13
TRIM28-205ENST00000595028 ATOH8Q96SQ7 321 aa14.27□□□□□ -0.13
TRIM28-205ENST00000595028 SLC6A16Q9GZN6 736 aa14.27□□□□□ -0.13
TRIM28-205ENST00000595028 EHD1Q9H4M9 534 aa14.27□□□□□ -0.13
TRIM28-205ENST00000595028 RIC8BQ9NVN3 520 aa14.27□□□□□ -0.13
TRIM28-205ENST00000595028 LUZP4Q9P127 313 aa14.27□□□□□ -0.13
TRIM28-205ENST00000595028 COPG2Q9UBF2 871 aa14.27□□□□□ -0.13
TRIM28-205ENST00000595028 ACOT9Q9Y305 439 aa14.27□□□□□ -0.13
TRIM28-205ENST00000595028 SCN2AQ99250 2005 aa14.27□□□□□ -0.13
TRIM28-205ENST00000595028 A0A087X1B8 175 aa14.26□□□□□ -0.13
TRIM28-205ENST00000595028 TTLL8A6PVC2 850 aa14.26□□□□□ -0.13
TRIM28-205ENST00000595028 SUPT3HB4E1H0 165 aa14.26□□□□□ -0.13
TRIM28-205ENST00000595028 SUPT3HO75486 399 aa14.26□□□□□ -0.13
TRIM28-205ENST00000595028 C2P06681 752 aa14.26□□□□□ -0.13
TRIM28-205ENST00000595028 SERPINA6P08185 405 aa14.26□□□□□ -0.13
TRIM28-205ENST00000595028 GSTM2P28161 218 aa14.26□□□□□ -0.13
TRIM28-205ENST00000595028 KCNC1P48547 511 aa14.26□□□□□ -0.13
TRIM28-205ENST00000595028 IRF9Q00978 393 aa14.26□□□□□ -0.13
TRIM28-205ENST00000595028 HYAL2Q12891 473 aa14.26□□□□□ -0.13
TRIM28-205ENST00000595028 PCOLCEQ15113 449 aa14.26□□□□□ -0.13
TRIM28-205ENST00000595028 RBBP5Q15291 538 aaKnown RBP14.26□□□□□ -0.13
TRIM28-205ENST00000595028 MFSD4BQ5TF39 518 aa14.26□□□□□ -0.13
TRIM28-205ENST00000595028 AGAP7PQ5VUJ5 663 aa14.26□□□□□ -0.13
TRIM28-205ENST00000595028 TMIGD1Q6UXZ0 262 aa14.26□□□□□ -0.13
TRIM28-205ENST00000595028 LRRC70Q7Z2Q7 622 aa14.26□□□□□ -0.13
TRIM28-205ENST00000595028 KBTBD2Q8IY47 623 aa14.26□□□□□ -0.13
TRIM28-205ENST00000595028 SNX31Q8N9S9 440 aa14.26□□□□□ -0.13
TRIM28-205ENST00000595028 TTLQ8NG68 377 aa14.26□□□□□ -0.13
TRIM28-205ENST00000595028 OR5T3Q8NGG3 340 aa14.26□□□□□ -0.13
TRIM28-205ENST00000595028 UTP15Q8TED0 518 aaKnown RBP14.26□□□□□ -0.13
TRIM28-205ENST00000595028 CREB3L4Q8TEY5 395 aa14.26□□□□□ -0.13
TRIM28-205ENST00000595028 UBTD2Q8WUN7 234 aa14.26□□□□□ -0.13
TRIM28-205ENST00000595028 KCTD4Q8WVF5 259 aa14.26□□□□□ -0.13
TRIM28-205ENST00000595028 METTL21AQ8WXB1 218 aa14.26□□□□□ -0.13
TRIM28-205ENST00000595028 THOC3Q96J01 351 aaKnown RBP14.26□□□□□ -0.13
TRIM28-205ENST00000595028 AGAP4Q96P64 663 aa14.26□□□□□ -0.13
TRIM28-205ENST00000595028 OR1F2PQ96R84 312 aa14.26□□□□□ -0.13
TRIM28-205ENST00000595028 CAPS2Q9BXY5 557 aa14.26□□□□□ -0.13
TRIM28-205ENST00000595028 RBCK1Q9BYM8 510 aa14.26□□□□□ -0.13
TRIM28-205ENST00000595028 PITHD1Q9GZP4 211 aaPredicted RBP14.26□□□□□ -0.13
TRIM28-205ENST00000595028 ZNF700Q9H0M5 742 aa14.26□□□□□ -0.13
TRIM28-205ENST00000595028 ZBTB20Q9HC78 741 aaPredicted RBP14.26□□□□□ -0.13
TRIM28-205ENST00000595028 PTBP2Q9UKA9 531 aaKnown RBP14.26□□□□□ -0.13
TRIM28-205ENST00000595028 ASB1Q9Y576 335 aa14.26□□□□□ -0.13
TRIM28-205ENST00000595028 A0A096LPK6 155 aa14.25□□□□□ -0.13
TRIM28-205ENST00000595028 URADA6NGE7 173 aa14.25□□□□□ -0.13
TRIM28-205ENST00000595028 C4orf51C9J302 202 aa14.25□□□□□ -0.13
TRIM28-205ENST00000595028 UBXN8O00124 270 aa14.25□□□□□ -0.13
TRIM28-205ENST00000595028 CLGNO14967 610 aa14.25□□□□□ -0.13
TRIM28-205ENST00000595028 B3GALT4O96024 378 aa14.25□□□□□ -0.13
TRIM28-205ENST00000595028 ALDOAP04075 364 aaKnown RBP14.25□□□□□ -0.13
TRIM28-205ENST00000595028 SERPINA7P05543 415 aa14.25□□□□□ -0.13
TRIM28-205ENST00000595028 EPORP19235 508 aa14.25□□□□□ -0.13
TRIM28-205ENST00000595028 IL10P22301 178 aa14.25□□□□□ -0.13
TRIM28-205ENST00000595028 OLR1P78380 273 aa14.25□□□□□ -0.13
TRIM28-205ENST00000595028 IGFL2Q6UWQ7 119 aa14.25□□□□□ -0.13
TRIM28-205ENST00000595028 LANCL3Q6ZV70 420 aa14.25□□□□□ -0.13
TRIM28-205ENST00000595028 KRT78Q8N1N4 520 aa14.25□□□□□ -0.13
TRIM28-205ENST00000595028 ZADH2Q8N4Q0 377 aa14.25□□□□□ -0.13
TRIM28-205ENST00000595028 CPT1CQ8TCG5 803 aa14.25□□□□□ -0.13
TRIM28-205ENST00000595028 SLC44A1Q8WWI5 657 aa14.25□□□□□ -0.13
TRIM28-205ENST00000595028 NXNL1Q96CM4 212 aa14.25□□□□□ -0.13
TRIM28-205ENST00000595028 WDR34Q96EX3 536 aa14.25□□□□□ -0.13
TRIM28-205ENST00000595028 PEX11GQ96HA9 241 aa14.25□□□□□ -0.13
TRIM28-205ENST00000595028 SEC16BQ96JE7 1060 aa14.25□□□□□ -0.13
TRIM28-205ENST00000595028 PAFAH2Q99487 392 aa14.25□□□□□ -0.13
TRIM28-205ENST00000595028 WDR77Q9BQA1 342 aaPredicted RBP14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms