RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 QRFPRQ96P65 431 aa10.24□□□□□ -0.77
SS18-213ENST00000579640 ROGDIQ9GZN7 287 aa10.24□□□□□ -0.77
SS18-213ENST00000579640 NOP53Q9NZM5 478 aaKnown RBP10.24□□□□□ -0.77
SS18-213ENST00000579640 ZKSCAN7Q9P0L1 754 aaPredicted RBP10.24□□□□□ -0.77
SS18-213ENST00000579640 ADAM29Q9UKF5 820 aa10.24□□□□□ -0.77
SS18-213ENST00000579640 MYO15AQ9UKN7 3530 aa10.24□□□□□ -0.77
SS18-213ENST00000579640 RIF1Q5UIP0 2472 aaKnown RBP10.24□□□□□ -0.77
SS18-213ENST00000579640 EP300Q09472 2414 aaPredicted RBP10.24□□□□□ -0.77
SS18-213ENST00000579640 CASC3O15234 703 aaKnown RBP10.23□□□□□ -0.77
SS18-213ENST00000579640 PRPS2P11908 318 aa10.23□□□□□ -0.77
SS18-213ENST00000579640 IDO1P14902 403 aa10.23□□□□□ -0.77
SS18-213ENST00000579640 HNRNPH1P31943 449 aaKnown RBP10.23□□□□□ -0.77
SS18-213ENST00000579640 ATP4BP51164 291 aa10.23□□□□□ -0.77
SS18-213ENST00000579640 EMP3P54852 163 aa10.23□□□□□ -0.77
SS18-213ENST00000579640 KIAA0040Q15053 153 aa10.23□□□□□ -0.77
SS18-213ENST00000579640 PRTGQ2VWP7 1150 aa10.23□□□□□ -0.77
SS18-213ENST00000579640 DEFB110Q30KQ9 67 aa10.23□□□□□ -0.77
SS18-213ENST00000579640 RFTN2Q52LD8 501 aaPredicted RBP10.23□□□□□ -0.77
SS18-213ENST00000579640 WASHC2DQ5SRD0 308 aa10.23□□□□□ -0.77
SS18-213ENST00000579640 PHF19Q5T6S3 580 aa10.23□□□□□ -0.77
SS18-213ENST00000579640 GARNL3Q5VVW2 1013 aa10.23□□□□□ -0.77
SS18-213ENST00000579640 TRIM40Q6P9F5 258 aa10.23□□□□□ -0.77
SS18-213ENST00000579640 ABHD13Q7L211 337 aa10.23□□□□□ -0.77
SS18-213ENST00000579640 ALYREFQ86V81 257 aaKnown RBP10.23□□□□□ -0.77
SS18-213ENST00000579640 DEFB124Q8NES8 71 aa10.23□□□□□ -0.77
SS18-213ENST00000579640 MS4A6EQ96DS6 147 aa10.23□□□□□ -0.77
SS18-213ENST00000579640 C11orf24Q96F05 449 aaPredicted RBP10.23□□□□□ -0.77
SS18-213ENST00000579640 APIPQ96GX9 242 aa10.23□□□□□ -0.77
SS18-213ENST00000579640 KCNC2Q96PR1 638 aa10.23□□□□□ -0.77
SS18-213ENST00000579640 F2RL3Q96RI0 385 aa10.23□□□□□ -0.77
SS18-213ENST00000579640 TBCDQ9BTW9 1192 aa10.23□□□□□ -0.77
SS18-213ENST00000579640 MRPL1Q9BYD6 325 aaKnown RBP10.23□□□□□ -0.77
SS18-213ENST00000579640 SYNPO2LQ9H987 977 aa10.23□□□□□ -0.77
SS18-213ENST00000579640 GIMAP2Q9UG22 337 aa10.23□□□□□ -0.77
SS18-213ENST00000579640 A0A088AWK7 358 aa10.23□□□□□ -0.77
SS18-213ENST00000579640 FITM1A5D6W6 292 aa10.23□□□□□ -0.77
SS18-213ENST00000579640 P2RX6O15547 441 aa10.23□□□□□ -0.77
SS18-213ENST00000579640 GFRA3O60609 400 aa10.23□□□□□ -0.77
SS18-213ENST00000579640 SH3BGRLO75368 114 aa10.23□□□□□ -0.77
SS18-213ENST00000579640 EIF2S1P05198 315 aaKnown RBP10.23□□□□□ -0.77
SS18-213ENST00000579640 NCF2P19878 526 aaPredicted RBP10.23□□□□□ -0.77
SS18-213ENST00000579640 ZNF10P21506 573 aaPredicted RBP10.23□□□□□ -0.77
SS18-213ENST00000579640 ADSLP30566 484 aaPredicted RBP10.23□□□□□ -0.77
SS18-213ENST00000579640 TIA1P31483 386 aaKnown RBP eCLIP10.23□□□□□ -0.77
SS18-213ENST00000579640 CSTF2P33240 577 aaKnown RBP eCLIP10.23□□□□□ -0.77
SS18-213ENST00000579640 GSTM5P46439 218 aa10.23□□□□□ -0.77
SS18-213ENST00000579640 MRPL19P49406 292 aaKnown RBP10.23□□□□□ -0.77
SS18-213ENST00000579640 STX1BP61266 288 aa10.23□□□□□ -0.77
SS18-213ENST00000579640 SQLEQ14534 574 aa10.23□□□□□ -0.77
SS18-213ENST00000579640 NDUFA9Q16795 377 aa10.23□□□□□ -0.77
SS18-213ENST00000579640 YOD1Q5VVQ6 348 aaPredicted RBP10.23□□□□□ -0.77
SS18-213ENST00000579640 CDCP2Q5VXM1 449 aa10.23□□□□□ -0.77
SS18-213ENST00000579640 TMEM214Q6NUQ4 689 aaKnown RBP10.23□□□□□ -0.77
SS18-213ENST00000579640 NIPAL1Q6NVV3 410 aa10.23□□□□□ -0.77
SS18-213ENST00000579640 NOXRED1Q6NXP6 359 aa10.23□□□□□ -0.77
SS18-213ENST00000579640 ABHD17CQ6PCB6 329 aa10.23□□□□□ -0.77
SS18-213ENST00000579640 COMMD6Q7Z4G1 85 aa10.23□□□□□ -0.77
SS18-213ENST00000579640 BPHLQ86WA6 291 aaPredicted RBP10.23□□□□□ -0.77
SS18-213ENST00000579640 NUDT13Q86X67 352 aa10.23□□□□□ -0.77
SS18-213ENST00000579640 C1orf52Q8N6N3 182 aaKnown RBP10.23□□□□□ -0.77
SS18-213ENST00000579640 TTC29Q8NA56 475 aaPredicted RBP10.23□□□□□ -0.77
SS18-213ENST00000579640 AGBL5Q8NDL9 886 aa10.23□□□□□ -0.77
SS18-213ENST00000579640 OR8K5Q8NH50 307 aa10.23□□□□□ -0.77
SS18-213ENST00000579640 LRRC37BQ96QE4 947 aa10.23□□□□□ -0.77
SS18-213ENST00000579640 STRADBQ9C0K7 418 aa10.23□□□□□ -0.77
SS18-213ENST00000579640 AIG1Q9NVV5 245 aa10.23□□□□□ -0.77
SS18-213ENST00000579640 TOR4AQ9NXH8 423 aa10.23□□□□□ -0.77
SS18-213ENST00000579640 AKAP7Q9P0M2 348 aaPredicted RBP10.23□□□□□ -0.77
SS18-213ENST00000579640 MCM8Q9UJA3 840 aa10.23□□□□□ -0.77
SS18-213ENST00000579640 SERTAD3Q9UJW9 196 aa10.23□□□□□ -0.77
SS18-213ENST00000579640 SLC22A7Q9Y694 548 aa10.23□□□□□ -0.77
SS18-213ENST00000579640 ADAMTS20P59510 1910 aa10.22□□□□□ -0.77
SS18-213ENST00000579640 TMEM150CB9EJG8 249 aa10.22□□□□□ -0.77
SS18-213ENST00000579640 SAP18O00422 153 aaKnown RBP10.22□□□□□ -0.77
SS18-213ENST00000579640 PLPP1O14494 284 aa10.22□□□□□ -0.77
SS18-213ENST00000579640 SLC22A2O15244 555 aa10.22□□□□□ -0.77
SS18-213ENST00000579640 ERI3O43414 337 aaKnown RBP10.22□□□□□ -0.77
SS18-213ENST00000579640 HCRTR1O43613 425 aa10.22□□□□□ -0.77
SS18-213ENST00000579640 DKK1O94907 266 aa10.22□□□□□ -0.77
SS18-213ENST00000579640 ALDOCP09972 364 aaKnown RBP10.22□□□□□ -0.77
SS18-213ENST00000579640 SMIM10L1P0DMW3 83 aa10.22□□□□□ -0.77
SS18-213ENST00000579640 FOLR1P15328 257 aa10.22□□□□□ -0.77
SS18-213ENST00000579640 PLA2G5P39877 138 aa10.22□□□□□ -0.77
SS18-213ENST00000579640 ITGA1P56199 1179 aa10.22□□□□□ -0.77
SS18-213ENST00000579640 SKP1P63208 163 aa10.22□□□□□ -0.77
SS18-213ENST00000579640 INSM1Q01101 510 aaPredicted RBP10.22□□□□□ -0.77
SS18-213ENST00000579640 KCNAB1Q14722 419 aa10.22□□□□□ -0.77
SS18-213ENST00000579640 GRM7Q14831 915 aa10.22□□□□□ -0.77
SS18-213ENST00000579640 HERC3Q15034 1050 aa10.22□□□□□ -0.77
SS18-213ENST00000579640 RPS6KA2Q15349 733 aa10.22□□□□□ -0.77
SS18-213ENST00000579640 HKDC1Q2TB90 917 aa10.22□□□□□ -0.77
SS18-213ENST00000579640 PDCD4Q53EL6 469 aaKnown RBP10.22□□□□□ -0.77
SS18-213ENST00000579640 IL23RQ5VWK5 629 aa10.22□□□□□ -0.77
SS18-213ENST00000579640 TMEM198Q66K66 360 aa10.22□□□□□ -0.77
SS18-213ENST00000579640 OR4C11Q6IEV9 310 aa10.22□□□□□ -0.77
SS18-213ENST00000579640 TLDC1Q6P9B6 456 aa10.22□□□□□ -0.77
SS18-213ENST00000579640 MTDHQ86UE4 582 aaKnown RBP10.22□□□□□ -0.77
SS18-213ENST00000579640 GPR135Q8IZ08 494 aa10.22□□□□□ -0.77
SS18-213ENST00000579640 CPSF7Q8N684 471 aaKnown RBP10.22□□□□□ -0.77
SS18-213ENST00000579640 KCT2Q8NC54 265 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms