RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 GBP7Q8N8V2 638 aaPredicted RBP16.26■□□□□ 0.19
NUP88-210ENST00000574867 SRFBP1Q8NEF9 429 aaKnown RBP16.26■□□□□ 0.19
NUP88-210ENST00000574867 SORT1Q99523 831 aa16.26■□□□□ 0.19
NUP88-210ENST00000574867 REXO4Q9GZR2 422 aaKnown RBP16.26■□□□□ 0.19
NUP88-210ENST00000574867 TRAF6Q9Y4K3 522 aa16.26■□□□□ 0.19
NUP88-210ENST00000574867 SPTBP11277 2137 aa16.25■□□□□ 0.19
NUP88-210ENST00000574867 SERTM1A2A2V5 107 aa16.25■□□□□ 0.19
NUP88-210ENST00000574867 DLGAP3O95886 979 aa16.25■□□□□ 0.19
NUP88-210ENST00000574867 TBX6O95947 436 aaPredicted RBP16.25■□□□□ 0.19
NUP88-210ENST00000574867 PDYNP01213 254 aa16.25■□□□□ 0.19
NUP88-210ENST00000574867 PTX3P26022 381 aaPredicted RBP16.25■□□□□ 0.19
NUP88-210ENST00000574867 RPS13P62277 151 aaKnown RBP16.25■□□□□ 0.19
NUP88-210ENST00000574867 CUL3Q13618 768 aa16.25■□□□□ 0.19
NUP88-210ENST00000574867 MAP7Q14244 749 aa16.25■□□□□ 0.19
NUP88-210ENST00000574867 TCHHL1Q5QJ38 904 aaPredicted RBP16.25■□□□□ 0.19
NUP88-210ENST00000574867 KHDRBS2Q5VWX1 349 aaKnown RBP16.25■□□□□ 0.19
NUP88-210ENST00000574867 CLEC6AQ6EIG7 209 aa16.25■□□□□ 0.19
NUP88-210ENST00000574867 ATG14Q6ZNE5 492 aa16.25■□□□□ 0.19
NUP88-210ENST00000574867 RGS9BPQ6ZS82 235 aa16.25■□□□□ 0.19
NUP88-210ENST00000574867 TTLL10Q6ZVT0 673 aa16.25■□□□□ 0.19
NUP88-210ENST00000574867 OR2L5Q8NG80 312 aa16.25■□□□□ 0.19
NUP88-210ENST00000574867 ZCCHC10Q8TBK6 192 aa16.25■□□□□ 0.19
NUP88-210ENST00000574867 SERPINI1Q99574 410 aa16.25■□□□□ 0.19
NUP88-210ENST00000574867 DPH2Q9BQC3 489 aaPredicted RBP16.25■□□□□ 0.19
NUP88-210ENST00000574867 C20orf27Q9GZN8 174 aa16.25■□□□□ 0.19
NUP88-210ENST00000574867 IQCJ-SCHIP1C9J366 451 aaPredicted RBP16.25■□□□□ 0.19
NUP88-210ENST00000574867 STMND1H3BQB6 276 aa16.25■□□□□ 0.19
NUP88-210ENST00000574867 NTRK1P04629 796 aa16.25■□□□□ 0.19
NUP88-210ENST00000574867 ZNF28P17035 718 aa16.25■□□□□ 0.19
NUP88-210ENST00000574867 HNRNPH1P31943 449 aaKnown RBP16.25■□□□□ 0.19
NUP88-210ENST00000574867 ARFIP1P53367 373 aa16.25■□□□□ 0.19
NUP88-210ENST00000574867 OCRLQ01968 901 aa16.25■□□□□ 0.19
NUP88-210ENST00000574867 SGO1Q5FBB7 561 aa16.25■□□□□ 0.19
NUP88-210ENST00000574867 PRMT9Q6P2P2 845 aa16.25■□□□□ 0.19
NUP88-210ENST00000574867 TRIM40Q6P9F5 258 aa16.25■□□□□ 0.19
NUP88-210ENST00000574867 ZNF781Q8N8C0 355 aa16.25■□□□□ 0.19
NUP88-210ENST00000574867 MTFMTQ96DP5 389 aaKnown RBP16.25■□□□□ 0.19
NUP88-210ENST00000574867 MS4A6EQ96DS6 147 aa16.25■□□□□ 0.19
NUP88-210ENST00000574867 FARSBQ9NSD9 589 aaKnown RBP16.25■□□□□ 0.19
NUP88-210ENST00000574867 NMRK1Q9NWW6 199 aa16.25■□□□□ 0.19
NUP88-210ENST00000574867 ZDHHC2Q9UIJ5 367 aa16.25■□□□□ 0.19
NUP88-210ENST00000574867 A0A088AWK7 358 aa16.24■□□□□ 0.19
NUP88-210ENST00000574867 SEMA3DO95025 777 aa16.24■□□□□ 0.19
NUP88-210ENST00000574867 TGFB1P01137 390 aa16.24■□□□□ 0.19
NUP88-210ENST00000574867 ALOX12P18054 663 aa16.24■□□□□ 0.19
NUP88-210ENST00000574867 ZNF10P21506 573 aaPredicted RBP16.24■□□□□ 0.19
NUP88-210ENST00000574867 RORAP35398 523 aa16.24■□□□□ 0.19
NUP88-210ENST00000574867 HTR6P50406 440 aa16.24■□□□□ 0.19
NUP88-210ENST00000574867 RPL14P50914 215 aaKnown RBP16.24■□□□□ 0.19
NUP88-210ENST00000574867 ABRAXAS2Q15018 415 aa16.24■□□□□ 0.19
NUP88-210ENST00000574867 TBC1D25Q3MII6 688 aa16.24■□□□□ 0.19
NUP88-210ENST00000574867 DEPDC1Q5TB30 811 aa16.24■□□□□ 0.19
NUP88-210ENST00000574867 AGR3Q8TD06 166 aa16.24■□□□□ 0.19
NUP88-210ENST00000574867 FAR2Q96K12 515 aa16.24■□□□□ 0.19
NUP88-210ENST00000574867 C7orf26Q96N11 449 aa16.24■□□□□ 0.19
NUP88-210ENST00000574867 KCNC2Q96PR1 638 aa16.24■□□□□ 0.19
NUP88-210ENST00000574867 SPRY4Q9C004 299 aa16.24■□□□□ 0.19
NUP88-210ENST00000574867 ZNF395Q9H8N7 513 aaPredicted RBP16.24■□□□□ 0.19
NUP88-210ENST00000574867 ANKHQ9HCJ1 492 aa16.24■□□□□ 0.19
NUP88-210ENST00000574867 DHCR7Q9UBM7 475 aaKnown RBP16.24■□□□□ 0.19
NUP88-210ENST00000574867 CDC14AQ9UNH5 594 aa16.24■□□□□ 0.19
NUP88-210ENST00000574867 FIS1Q9Y3D6 152 aa16.24■□□□□ 0.19
NUP88-210ENST00000574867 DNAJC15Q9Y5T4 150 aa16.24■□□□□ 0.19
NUP88-210ENST00000574867 TMEM233B4DJY2 109 aa16.23■□□□□ 0.19
NUP88-210ENST00000574867 ERI3O43414 337 aaKnown RBP16.23■□□□□ 0.19
NUP88-210ENST00000574867 NSA2O95478 260 aaKnown RBP16.23■□□□□ 0.19
NUP88-210ENST00000574867 ZNF888P0CJ79 500 aaPredicted RBP16.23■□□□□ 0.19
NUP88-210ENST00000574867 TSFMP43897 325 aaKnown RBP16.23■□□□□ 0.19
NUP88-210ENST00000574867 AVPR1BP47901 424 aa16.23■□□□□ 0.19
NUP88-210ENST00000574867 DSELQ8IZU8 1212 aa16.23■□□□□ 0.19
NUP88-210ENST00000574867 RNF175Q8N4F7 328 aa16.23■□□□□ 0.19
NUP88-210ENST00000574867 ESX1Q8N693 406 aa16.23■□□□□ 0.19
NUP88-210ENST00000574867 SLC38A9Q8NBW4 561 aa16.23■□□□□ 0.19
NUP88-210ENST00000574867 UTP15Q8TED0 518 aaKnown RBP16.23■□□□□ 0.19
NUP88-210ENST00000574867 TWIST2Q8WVJ9 160 aa16.23■□□□□ 0.19
NUP88-210ENST00000574867 GBP5Q96PP8 586 aa16.23■□□□□ 0.19
NUP88-210ENST00000574867 CCT7Q99832 543 aa16.23■□□□□ 0.19
NUP88-210ENST00000574867 ROGDIQ9GZN7 287 aa16.23■□□□□ 0.19
NUP88-210ENST00000574867 OR51B5Q9H339 312 aa16.23■□□□□ 0.19
NUP88-210ENST00000574867 PFDN4Q9NQP4 134 aa16.23■□□□□ 0.19
NUP88-210ENST00000574867 NDOR1Q9UHB4 597 aa16.23■□□□□ 0.19
NUP88-210ENST00000574867 MRPS2Q9Y399 296 aaKnown RBP16.23■□□□□ 0.19
NUP88-210ENST00000574867 SDK2Q58EX2 2172 aa16.23■□□□□ 0.19
NUP88-210ENST00000574867 MED26O95402 600 aa16.23■□□□□ 0.19
NUP88-210ENST00000574867 KLK3P07288 261 aaPredicted RBP16.23■□□□□ 0.19
NUP88-210ENST00000574867 SMIM10L1P0DMW3 83 aa16.23■□□□□ 0.19
NUP88-210ENST00000574867 ALAS2P22557 587 aa16.23■□□□□ 0.19
NUP88-210ENST00000574867 SERPINB3P29508 390 aa16.23■□□□□ 0.19
NUP88-210ENST00000574867 RAP1GDS1P52306 607 aa16.23■□□□□ 0.19
NUP88-210ENST00000574867 ABHD18Q0P651 414 aa16.23■□□□□ 0.19
NUP88-210ENST00000574867 UGT3A2Q3SY77 523 aa16.23■□□□□ 0.19
NUP88-210ENST00000574867 C6orf15Q6UXA7 325 aaPredicted RBP16.23■□□□□ 0.19
NUP88-210ENST00000574867 TRIM46Q7Z4K8 759 aa16.23■□□□□ 0.19
NUP88-210ENST00000574867 SMIM10Q96HG1 83 aa16.23■□□□□ 0.19
NUP88-210ENST00000574867 F2RL3Q96RI0 385 aa16.23■□□□□ 0.19
NUP88-210ENST00000574867 HBEGFQ99075 208 aa16.23■□□□□ 0.19
NUP88-210ENST00000574867 TBCDQ9BTW9 1192 aa16.23■□□□□ 0.19
NUP88-210ENST00000574867 AICDAQ9GZX7 198 aa16.23■□□□□ 0.19
NUP88-210ENST00000574867 KLHL31Q9H511 634 aa16.23■□□□□ 0.19
NUP88-210ENST00000574867 SLC12A4Q9UP95 1085 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms