RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 C21orf58P58505 322 aa13.05□□□□□ -0.32
CCDC40-209ENST00000573474 ARF3P61204 181 aaPredicted RBP13.05□□□□□ -0.32
CCDC40-209ENST00000573474 MXRA7P84157 204 aa13.05□□□□□ -0.32
CCDC40-209ENST00000573474 RCAN2Q14206 197 aa13.05□□□□□ -0.32
CCDC40-209ENST00000573474 PROX2Q3B8N5 592 aa13.05□□□□□ -0.32
CCDC40-209ENST00000573474 MMEL1Q495T6 779 aa13.05□□□□□ -0.32
CCDC40-209ENST00000573474 VPS26BQ4G0F5 336 aa13.05□□□□□ -0.32
CCDC40-209ENST00000573474 MANEAQ5SRI9 462 aa13.05□□□□□ -0.32
CCDC40-209ENST00000573474 OR4C11Q6IEV9 310 aa13.05□□□□□ -0.32
CCDC40-209ENST00000573474 DBX2Q6ZNG2 339 aa13.05□□□□□ -0.32
CCDC40-209ENST00000573474 ASRGL1Q7L266 308 aa13.05□□□□□ -0.32
CCDC40-209ENST00000573474 MCATQ8IVS2 390 aaKnown RBP13.05□□□□□ -0.32
CCDC40-209ENST00000573474 DNAJC22Q8N4W6 341 aa13.05□□□□□ -0.32
CCDC40-209ENST00000573474 ZNF655Q8N720 491 aaPredicted RBP13.05□□□□□ -0.32
CCDC40-209ENST00000573474 OR2L5Q8NG80 312 aa13.05□□□□□ -0.32
CCDC40-209ENST00000573474 CLHC1Q8NHS4 586 aa13.05□□□□□ -0.32
CCDC40-209ENST00000573474 RCN3Q96D15 328 aa13.05□□□□□ -0.32
CCDC40-209ENST00000573474 MS4A6EQ96DS6 147 aa13.05□□□□□ -0.32
CCDC40-209ENST00000573474 SPDL1Q96EA4 605 aa13.05□□□□□ -0.32
CCDC40-209ENST00000573474 MACROD1Q9BQ69 325 aa13.05□□□□□ -0.32
CCDC40-209ENST00000573474 LRFN3Q9BTN0 628 aa13.05□□□□□ -0.32
CCDC40-209ENST00000573474 TBCDQ9BTW9 1192 aa13.05□□□□□ -0.32
CCDC40-209ENST00000573474 AICDAQ9GZX7 198 aa13.05□□□□□ -0.32
CCDC40-209ENST00000573474 C1orf21Q9H246 121 aa13.05□□□□□ -0.32
CCDC40-209ENST00000573474 KCNH6Q9H252 994 aa13.05□□□□□ -0.32
CCDC40-209ENST00000573474 LRMDAQ9H2I8 198 aa13.05□□□□□ -0.32
CCDC40-209ENST00000573474 KLHL31Q9H511 634 aa13.05□□□□□ -0.32
CCDC40-209ENST00000573474 CLMPQ9H6B4 373 aa13.05□□□□□ -0.32
CCDC40-209ENST00000573474 SYNPO2LQ9H987 977 aa13.05□□□□□ -0.32
CCDC40-209ENST00000573474 SLC52A3Q9NQ40 469 aa13.05□□□□□ -0.32
CCDC40-209ENST00000573474 TAS2R1Q9NYW7 299 aa13.05□□□□□ -0.32
CCDC40-209ENST00000573474 NDUFAF1Q9Y375 327 aa13.05□□□□□ -0.32
CCDC40-209ENST00000573474 ADAMTS9Q9P2N4 1935 aa13.05□□□□□ -0.32
CCDC40-209ENST00000573474 LOC105369274A0A096LPK9 316 aa13.04□□□□□ -0.32
CCDC40-209ENST00000573474 LOC102723532A0A0G2JNH3 316 aa13.04□□□□□ -0.32
CCDC40-209ENST00000573474 A0A1W2PP18 115 aa13.04□□□□□ -0.32
CCDC40-209ENST00000573474 LNP1A1A4G5 178 aa13.04□□□□□ -0.32
CCDC40-209ENST00000573474 ARHGAP10A1A4S6 786 aa13.04□□□□□ -0.32
CCDC40-209ENST00000573474 URADA6NGE7 173 aa13.04□□□□□ -0.32
CCDC40-209ENST00000573474 CCDC154A6NI56 674 aa13.04□□□□□ -0.32
CCDC40-209ENST00000573474 C9JVG2 144 aa13.04□□□□□ -0.32
CCDC40-209ENST00000573474 AIM2O14862 343 aa13.04□□□□□ -0.32
CCDC40-209ENST00000573474 ANGPT2O15123 496 aa13.04□□□□□ -0.32
CCDC40-209ENST00000573474 GYG2O15488 501 aa13.04□□□□□ -0.32
CCDC40-209ENST00000573474 CFLARO15519 480 aa13.04□□□□□ -0.32
CCDC40-209ENST00000573474 SRPX2O60687 465 aaPredicted RBP13.04□□□□□ -0.32
CCDC40-209ENST00000573474 RASSF9O75901 435 aa13.04□□□□□ -0.32
CCDC40-209ENST00000573474 ZBTB11O95625 1053 aaPredicted RBP13.04□□□□□ -0.32
CCDC40-209ENST00000573474 STATHP02808 62 aa13.04□□□□□ -0.32
CCDC40-209ENST00000573474 IL6P05231 212 aa13.04□□□□□ -0.32
CCDC40-209ENST00000573474 CAPN3P20807 821 aa13.04□□□□□ -0.32
CCDC40-209ENST00000573474 TPP2P29144 1249 aaPredicted RBP13.04□□□□□ -0.32
CCDC40-209ENST00000573474 GRK6P43250 576 aa13.04□□□□□ -0.32
CCDC40-209ENST00000573474 TSFMP43897 325 aaKnown RBP13.04□□□□□ -0.32
CCDC40-209ENST00000573474 GSTM5P46439 218 aa13.04□□□□□ -0.32
CCDC40-209ENST00000573474 PLA2G16P53816 162 aa13.04□□□□□ -0.32
CCDC40-209ENST00000573474 DAB2P98082 770 aa13.04□□□□□ -0.32
CCDC40-209ENST00000573474 CFHR1Q03591 330 aa13.04□□□□□ -0.32
CCDC40-209ENST00000573474 ACTN3Q08043 901 aaPredicted RBP13.04□□□□□ -0.32
CCDC40-209ENST00000573474 ZNF763Q0D2J5 394 aa13.04□□□□□ -0.32
CCDC40-209ENST00000573474 TCF15Q12870 199 aa13.04□□□□□ -0.32
CCDC40-209ENST00000573474 ART3Q13508 389 aa13.04□□□□□ -0.32
CCDC40-209ENST00000573474 COQ5Q5HYK3 327 aa13.04□□□□□ -0.32
CCDC40-209ENST00000573474 PERM1Q5SV97 790 aa13.04□□□□□ -0.32
CCDC40-209ENST00000573474 CCNYL2Q5T2Q4 361 aa13.04□□□□□ -0.32
CCDC40-209ENST00000573474 FRMPD2BQ6IN97 320 aa13.04□□□□□ -0.32
CCDC40-209ENST00000573474 TRIM40Q6P9F5 258 aa13.04□□□□□ -0.32
CCDC40-209ENST00000573474 ABHD17CQ6PCB6 329 aa13.04□□□□□ -0.32
CCDC40-209ENST00000573474 USP53Q70EK8 1073 aa13.04□□□□□ -0.32
CCDC40-209ENST00000573474 NUDT13Q86X67 352 aa13.04□□□□□ -0.32
CCDC40-209ENST00000573474 RIMKLAQ8IXN7 391 aa13.04□□□□□ -0.32
CCDC40-209ENST00000573474 OR4N4Q8N0Y3 316 aa13.04□□□□□ -0.32
CCDC40-209ENST00000573474 KRTCAP2Q8N6L1 136 aa13.04□□□□□ -0.32
CCDC40-209ENST00000573474 RBM15BQ8NDT2 890 aaKnown RBP13.04□□□□□ -0.32
CCDC40-209ENST00000573474 C16orf78Q8WTQ4 265 aa13.04□□□□□ -0.32
CCDC40-209ENST00000573474 STARD8Q92502 1023 aa13.04□□□□□ -0.32
CCDC40-209ENST00000573474 GAL3ST3Q96A11 431 aa13.04□□□□□ -0.32
CCDC40-209ENST00000573474 TESCQ96BS2 214 aa13.04□□□□□ -0.32
CCDC40-209ENST00000573474 SLC45A3Q96JT2 553 aa13.04□□□□□ -0.32
CCDC40-209ENST00000573474 EGLN2Q96KS0 407 aa13.04□□□□□ -0.32
CCDC40-209ENST00000573474 KCNC2Q96PR1 638 aa13.04□□□□□ -0.32
CCDC40-209ENST00000573474 DPYSL5Q9BPU6 564 aa13.04□□□□□ -0.32
CCDC40-209ENST00000573474 CCDC3Q9BQI4 270 aa13.04□□□□□ -0.32
CCDC40-209ENST00000573474 SORBS1Q9BX66 1292 aaKnown RBP13.04□□□□□ -0.32
CCDC40-209ENST00000573474 ZNF717Q9BY31 904 aaPredicted RBP13.04□□□□□ -0.32
CCDC40-209ENST00000573474 NLNQ9BYT8 704 aa13.04□□□□□ -0.32
CCDC40-209ENST00000573474 ZMYND15Q9H091 742 aa13.04□□□□□ -0.32
CCDC40-209ENST00000573474 DDX31Q9H8H2 851 aaKnown RBP13.04□□□□□ -0.32
CCDC40-209ENST00000573474 FAM60AQ9NP50 221 aa13.04□□□□□ -0.32
CCDC40-209ENST00000573474 PDE7BQ9NP56 450 aa13.04□□□□□ -0.32
CCDC40-209ENST00000573474 MYNNQ9NPC7 610 aa13.04□□□□□ -0.32
CCDC40-209ENST00000573474 LHX9Q9NQ69 397 aa13.04□□□□□ -0.32
CCDC40-209ENST00000573474 SEMA5BQ9P283 1151 aa13.04□□□□□ -0.32
CCDC40-209ENST00000573474 MN1Q10571 1320 aaPredicted RBP13.04□□□□□ -0.32
CCDC40-209ENST00000573474 ZNF318Q5VUA4 2279 aa13.04□□□□□ -0.32
CCDC40-209ENST00000573474 ARID1BQ8NFD5 2236 aaPredicted RBP13.03□□□□□ -0.32
CCDC40-209ENST00000573474 IGHV5-51A0A0C4DH38 117 aa13.03□□□□□ -0.32
CCDC40-209ENST00000573474 ANKRD65E5RJM6 399 aa13.03□□□□□ -0.32
CCDC40-209ENST00000573474 RTCAO00442 366 aaKnown RBP13.03□□□□□ -0.32
CCDC40-209ENST00000573474 FBP2O00757 339 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms