RNA–Protein interactions for RNA: ENST00000571028.1

CCDC40-205, Transcript of coiled-coil domain containing 40, humanhuman

TSL 5

Gene CCDC40, Length 593 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-205ENST00000571028 UBTD2Q8WUN7 234 aa12.67□□□□□ -0.38
CCDC40-205ENST00000571028 CLIP3Q96DZ5 547 aa12.67□□□□□ -0.38
CCDC40-205ENST00000571028 APOPT1Q96IL0 206 aa12.67□□□□□ -0.38
CCDC40-205ENST00000571028 ZFYVE21Q9BQ24 234 aa12.67□□□□□ -0.38
CCDC40-205ENST00000571028 MACROD1Q9BQ69 325 aa12.67□□□□□ -0.38
CCDC40-205ENST00000571028 SPNS1Q9H2V7 528 aa12.67□□□□□ -0.38
CCDC40-205ENST00000571028 AKIRIN1Q9H9L7 192 aaPredicted RBP12.67□□□□□ -0.38
CCDC40-205ENST00000571028 KCNK9Q9NPC2 374 aa12.67□□□□□ -0.38
CCDC40-205ENST00000571028 C5AR2Q9P296 337 aa12.67□□□□□ -0.38
CCDC40-205ENST00000571028 SLC17A7Q9P2U7 560 aa12.67□□□□□ -0.38
CCDC40-205ENST00000571028 POLQO75417 2590 aa12.66□□□□□ -0.38
CCDC40-205ENST00000571028 LRRTM2O43300 516 aa12.66□□□□□ -0.38
CCDC40-205ENST00000571028 KLK8O60259 260 aa12.66□□□□□ -0.38
CCDC40-205ENST00000571028 PLIN3O60664 434 aa12.66□□□□□ -0.38
CCDC40-205ENST00000571028 PROCP04070 461 aa12.66□□□□□ -0.38
CCDC40-205ENST00000571028 C1GALT1C1LP0DN25 315 aa12.66□□□□□ -0.38
CCDC40-205ENST00000571028 EPB42P16452 691 aa12.66□□□□□ -0.38
CCDC40-205ENST00000571028 GNAZP19086 355 aa12.66□□□□□ -0.38
CCDC40-205ENST00000571028 ATP5F1P24539 256 aaPredicted RBP12.66□□□□□ -0.38
CCDC40-205ENST00000571028 HRH2P25021 359 aa12.66□□□□□ -0.38
CCDC40-205ENST00000571028 BCL6P41182 706 aa12.66□□□□□ -0.38
CCDC40-205ENST00000571028 CDH13P55290 713 aa12.66□□□□□ -0.38
CCDC40-205ENST00000571028 IRF8Q02556 426 aa12.66□□□□□ -0.38
CCDC40-205ENST00000571028 CHIT1Q13231 466 aa12.66□□□□□ -0.38
CCDC40-205ENST00000571028 GTF2H2Q13888 395 aa12.66□□□□□ -0.38
CCDC40-205ENST00000571028 SLBPQ14493 270 aaKnown RBP eCLIP12.66□□□□□ -0.38
CCDC40-205ENST00000571028 CCDC153Q494R4 210 aa12.66□□□□□ -0.38
CCDC40-205ENST00000571028 PLEKHN1Q494U1 663 aaPredicted RBP12.66□□□□□ -0.38
CCDC40-205ENST00000571028 WASHC2DQ5SRD0 308 aa12.66□□□□□ -0.38
CCDC40-205ENST00000571028 C1orf189Q5VU69 101 aa12.66□□□□□ -0.38
CCDC40-205ENST00000571028 SP5Q6BEB4 398 aaPredicted RBP12.66□□□□□ -0.38
CCDC40-205ENST00000571028 GTF2H2CQ6P1K8 395 aa12.66□□□□□ -0.38
CCDC40-205ENST00000571028 SLCO4C1Q6ZQN7 724 aa12.66□□□□□ -0.38
CCDC40-205ENST00000571028 RNF44Q7L0R7 432 aa12.66□□□□□ -0.38
CCDC40-205ENST00000571028 GOLGA7Q7Z5G4 137 aa12.66□□□□□ -0.38
CCDC40-205ENST00000571028 LCA5Q86VQ0 697 aa12.66□□□□□ -0.38
CCDC40-205ENST00000571028 TMEM151AQ8N4L1 468 aa12.66□□□□□ -0.38
CCDC40-205ENST00000571028 CCNYL1Q8N7R7 359 aa12.66□□□□□ -0.38
CCDC40-205ENST00000571028 ENDOVQ8N8Q3 282 aaKnown RBP12.66□□□□□ -0.38
CCDC40-205ENST00000571028 ARMC2Q8NEN0 867 aa12.66□□□□□ -0.38
CCDC40-205ENST00000571028 TM9SF4Q92544 642 aa12.66□□□□□ -0.38
CCDC40-205ENST00000571028 ATP6V1E2Q96A05 226 aa12.66□□□□□ -0.38
CCDC40-205ENST00000571028 RERGQ96A58 199 aaPredicted RBP12.66□□□□□ -0.38
CCDC40-205ENST00000571028 NSUN5Q96P11 429 aaKnown RBP12.66□□□□□ -0.38
CCDC40-205ENST00000571028 FAM111AQ96PZ2 611 aa12.66□□□□□ -0.38
CCDC40-205ENST00000571028 SMAD5Q99717 465 aaKnown RBP12.66□□□□□ -0.38
CCDC40-205ENST00000571028 PELI2Q9HAT8 420 aa12.66□□□□□ -0.38
CCDC40-205ENST00000571028 SEMA4BQ9NPR2 832 aaPredicted RBP12.66□□□□□ -0.38
CCDC40-205ENST00000571028 NDOR1Q9UHB4 597 aa12.66□□□□□ -0.38
CCDC40-205ENST00000571028 TMCO1Q9UM00 188 aa12.66□□□□□ -0.38
CCDC40-205ENST00000571028 TNPO3Q9Y5L0 923 aaKnown RBP12.66□□□□□ -0.38
CCDC40-205ENST00000571028 HIVEP3Q5T1R4 2406 aa12.66□□□□□ -0.38
CCDC40-205ENST00000571028 ZNF749O43361 778 aa12.65□□□□□ -0.38
CCDC40-205ENST00000571028 LCMT2O60294 686 aaKnown RBP12.65□□□□□ -0.38
CCDC40-205ENST00000571028 KLHL41O60662 606 aa12.65□□□□□ -0.38
CCDC40-205ENST00000571028 SUPT7LO94864 414 aa12.65□□□□□ -0.38
CCDC40-205ENST00000571028 CPA3P15088 417 aa12.65□□□□□ -0.38
CCDC40-205ENST00000571028 EZRP15311 586 aaKnown RBP12.65□□□□□ -0.38
CCDC40-205ENST00000571028 ALAS2P22557 587 aa12.65□□□□□ -0.38
CCDC40-205ENST00000571028 DOC2AQ14183 400 aa12.65□□□□□ -0.38
CCDC40-205ENST00000571028 PCBP2Q15366 365 aaKnown RBP eCLIP12.65□□□□□ -0.385e-7■■■■■ 29.1
CCDC40-205ENST00000571028 RBBP7Q16576 425 aa12.65□□□□□ -0.38
CCDC40-205ENST00000571028 ZYG11AQ6WRX3 759 aa12.65□□□□□ -0.38
CCDC40-205ENST00000571028 EXOC3L1Q86VI1 746 aa12.65□□□□□ -0.38
CCDC40-205ENST00000571028 KLHDC8AQ8IYD2 350 aa12.65□□□□□ -0.38
CCDC40-205ENST00000571028 TBC1D19Q8N5T2 526 aa12.65□□□□□ -0.38
CCDC40-205ENST00000571028 METTL27Q8N6F8 245 aaPredicted RBP12.65□□□□□ -0.38
CCDC40-205ENST00000571028 CSNK1A1LQ8N752 337 aa12.65□□□□□ -0.38
CCDC40-205ENST00000571028 TTC29Q8NA56 475 aaPredicted RBP12.65□□□□□ -0.38
CCDC40-205ENST00000571028 ABHD11Q8NFV4 315 aa12.65□□□□□ -0.38
CCDC40-205ENST00000571028 OR8K5Q8NH50 307 aa12.65□□□□□ -0.38
CCDC40-205ENST00000571028 TCP10LQ8TDR4 215 aa12.65□□□□□ -0.38
CCDC40-205ENST00000571028 CCT6BQ92526 530 aa12.65□□□□□ -0.38
CCDC40-205ENST00000571028 AIF1LQ9BQI0 150 aa12.65□□□□□ -0.38
CCDC40-205ENST00000571028 NDC1Q9BTX1 674 aa12.65□□□□□ -0.38
CCDC40-205ENST00000571028 CAPS2Q9BXY5 557 aa12.65□□□□□ -0.38
CCDC40-205ENST00000571028 CHST8Q9H2A9 424 aa12.65□□□□□ -0.38
CCDC40-205ENST00000571028 NOL11Q9H8H0 719 aaKnown RBP12.65□□□□□ -0.38
CCDC40-205ENST00000571028 IPPKQ9H8X2 491 aa12.65□□□□□ -0.38
CCDC40-205ENST00000571028 SYNPO2LQ9H987 977 aa12.65□□□□□ -0.38
CCDC40-205ENST00000571028 ACTR5Q9H9F9 607 aaPredicted RBP12.65□□□□□ -0.38
CCDC40-205ENST00000571028 TMBIM4Q9HC24 238 aa12.65□□□□□ -0.38
CCDC40-205ENST00000571028 DHCR7Q9UBM7 475 aaKnown RBP12.65□□□□□ -0.38
CCDC40-205ENST00000571028 ITGB1BP2Q9UKP3 347 aa12.65□□□□□ -0.38
CCDC40-205ENST00000571028 TCFL5Q9UL49 500 aa12.65□□□□□ -0.38
CCDC40-205ENST00000571028 PLLPQ9Y342 182 aa12.65□□□□□ -0.38
CCDC40-205ENST00000571028 KLK4Q9Y5K2 254 aa12.65□□□□□ -0.38
CCDC40-205ENST00000571028 G3V2L1 256 aa12.64□□□□□ -0.39
CCDC40-205ENST00000571028 STX16-NPEPL1H3BU86 382 aa12.64□□□□□ -0.39
CCDC40-205ENST00000571028 E2F3O00716 465 aa12.64□□□□□ -0.39
CCDC40-205ENST00000571028 STX16O14662 325 aa12.64□□□□□ -0.39
CCDC40-205ENST00000571028 ZSCAN9O15535 394 aaPredicted RBP12.64□□□□□ -0.39
CCDC40-205ENST00000571028 PRAMEF4O60810 478 aa12.64□□□□□ -0.39
CCDC40-205ENST00000571028 RAB40ALP0C0E4 278 aa12.64□□□□□ -0.39
CCDC40-205ENST00000571028 PCNAP12004 261 aa12.64□□□□□ -0.39
CCDC40-205ENST00000571028 EPORP19235 508 aa12.64□□□□□ -0.39
CCDC40-205ENST00000571028 HNF4AP41235 474 aa12.64□□□□□ -0.39
CCDC40-205ENST00000571028 RPS15AP62244 130 aaKnown RBP12.64□□□□□ -0.39
CCDC40-205ENST00000571028 REEP5Q00765 189 aa12.64□□□□□ -0.39
CCDC40-205ENST00000571028 ATP1A4Q13733 1029 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms