RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 ANKDD1BA6NHY2 528 aa16.39■□□□□ 0.21
CLN3-217ENST00000565354 GOLGA6L10A6NI86 522 aa16.39■□□□□ 0.21
CLN3-217ENST00000565354 ENO4A6NNW6 628 aa16.39■□□□□ 0.21
CLN3-217ENST00000565354 MKRN2OSH3BPM6 223 aa16.39■□□□□ 0.21
CLN3-217ENST00000565354 K7EM74 188 aa16.39■□□□□ 0.21
CLN3-217ENST00000565354 AVPR1BP47901 424 aa16.39■□□□□ 0.21
CLN3-217ENST00000565354 CCNG1P51959 295 aa16.39■□□□□ 0.21
CLN3-217ENST00000565354 RBBP7Q16576 425 aa16.39■□□□□ 0.21
CLN3-217ENST00000565354 NKAIN1Q4KMZ8 207 aa16.39■□□□□ 0.21
CLN3-217ENST00000565354 PRMT9Q6P2P2 845 aa16.39■□□□□ 0.21
CLN3-217ENST00000565354 SH2D5Q6ZV89 423 aa16.39■□□□□ 0.21
CLN3-217ENST00000565354 IQCKQ8N0W5 287 aa16.39■□□□□ 0.21
CLN3-217ENST00000565354 ZBTB9Q96C00 473 aa16.39■□□□□ 0.21
CLN3-217ENST00000565354 CCDC126Q96EE4 140 aa16.39■□□□□ 0.21
CLN3-217ENST00000565354 MACROD1Q9BQ69 325 aa16.39■□□□□ 0.21
CLN3-217ENST00000565354 YIPF2Q9BWQ6 316 aa16.39■□□□□ 0.21
CLN3-217ENST00000565354 DRC3Q9H069 523 aa16.39■□□□□ 0.21
CLN3-217ENST00000565354 AKIRIN1Q9H9L7 192 aaPredicted RBP16.39■□□□□ 0.21
CLN3-217ENST00000565354 ZNF304Q9HCX3 659 aa16.39■□□□□ 0.21
CLN3-217ENST00000565354 ENAMQ9NRM1 1142 aa16.39■□□□□ 0.21
CLN3-217ENST00000565354 PADI2Q9Y2J8 665 aa16.39■□□□□ 0.21
CLN3-217ENST00000565354 MAU2Q9Y6X3 613 aa16.39■□□□□ 0.21
CLN3-217ENST00000565354 CELSR2Q9HCU4 2923 aa16.39■□□□□ 0.21
CLN3-217ENST00000565354 MDC1Q14676 2089 aaKnown RBP16.38■□□□□ 0.21
CLN3-217ENST00000565354 E2F3O00716 465 aa16.38■□□□□ 0.21
CLN3-217ENST00000565354 CTIFO43310 598 aaKnown RBP16.38■□□□□ 0.21
CLN3-217ENST00000565354 DLX3O60479 287 aa16.38■□□□□ 0.21
CLN3-217ENST00000565354 SPAG7O75391 227 aa16.38■□□□□ 0.21
CLN3-217ENST00000565354 SUPT7LO94864 414 aa16.38■□□□□ 0.21
CLN3-217ENST00000565354 PROCP04070 461 aa16.38■□□□□ 0.21
CLN3-217ENST00000565354 CD63P08962 238 aa16.38■□□□□ 0.21
CLN3-217ENST00000565354 SBK3P0C264 359 aa16.38■□□□□ 0.21
CLN3-217ENST00000565354 PCNAP12004 261 aa16.38■□□□□ 0.21
CLN3-217ENST00000565354 GSTM2P28161 218 aa16.38■□□□□ 0.21
CLN3-217ENST00000565354 OR1D4P47884 311 aa16.38■□□□□ 0.21
CLN3-217ENST00000565354 UQCRFS1P47985 274 aa16.38■□□□□ 0.21
CLN3-217ENST00000565354 PWP1Q13610 501 aa16.38■□□□□ 0.21
CLN3-217ENST00000565354 TBCCQ15814 346 aa16.38■□□□□ 0.21
CLN3-217ENST00000565354 MED27Q6P2C8 311 aa16.38■□□□□ 0.21
CLN3-217ENST00000565354 ASB18Q6ZVZ8 466 aa16.38■□□□□ 0.21
CLN3-217ENST00000565354 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP16.38■□□□□ 0.21
CLN3-217ENST00000565354 ENDOVQ8N8Q3 282 aaKnown RBP16.38■□□□□ 0.21
CLN3-217ENST00000565354 RDH11Q8TC12 318 aa16.38■□□□□ 0.21
CLN3-217ENST00000565354 WDR34Q96EX3 536 aa16.38■□□□□ 0.21
CLN3-217ENST00000565354 MVB12AQ96EY5 273 aa16.38■□□□□ 0.21
CLN3-217ENST00000565354 MMABQ96EY8 250 aaPredicted RBP16.38■□□□□ 0.21
CLN3-217ENST00000565354 C10orf90Q96M02 699 aa16.38■□□□□ 0.21
CLN3-217ENST00000565354 GPR87Q9BY21 358 aa16.38■□□□□ 0.21
CLN3-217ENST00000565354 STMN4Q9H169 189 aaPredicted RBP16.38■□□□□ 0.21
CLN3-217ENST00000565354 NT5DC2Q9H857 520 aa16.38■□□□□ 0.21
CLN3-217ENST00000565354 NOL11Q9H8H0 719 aaKnown RBP16.38■□□□□ 0.21
CLN3-217ENST00000565354 ANKHQ9HCJ1 492 aa16.38■□□□□ 0.21
CLN3-217ENST00000565354 SEMA4BQ9NPR2 832 aaPredicted RBP16.38■□□□□ 0.21
CLN3-217ENST00000565354 PCTPQ9UKL6 214 aa16.38■□□□□ 0.21
CLN3-217ENST00000565354 FARSAQ9Y285 508 aaKnown RBP16.38■□□□□ 0.21
CLN3-217ENST00000565354 MRPS18BQ9Y676 258 aaKnown RBP16.38■□□□□ 0.21
CLN3-217ENST00000565354 SHANK1Q9Y566 2161 aa16.37■□□□□ 0.21
CLN3-217ENST00000565354 PLIN3O60664 434 aa16.37■□□□□ 0.21
CLN3-217ENST00000565354 VPS4BO75351 444 aa16.37■□□□□ 0.21
CLN3-217ENST00000565354 RPS17P08708 135 aaKnown RBP16.37■□□□□ 0.21
CLN3-217ENST00000565354 RAB40ALP0C0E4 278 aa16.37■□□□□ 0.21
CLN3-217ENST00000565354 EPORP19235 508 aa16.37■□□□□ 0.21
CLN3-217ENST00000565354 FBLP22087 321 aaKnown RBP16.37■□□□□ 0.21
CLN3-217ENST00000565354 HPDP32754 393 aaPredicted RBP16.37■□□□□ 0.21
CLN3-217ENST00000565354 HNF4AP41235 474 aa16.37■□□□□ 0.21
CLN3-217ENST00000565354 CASP2P42575 452 aa16.37■□□□□ 0.21
CLN3-217ENST00000565354 GCGRP47871 477 aa16.37■□□□□ 0.21
CLN3-217ENST00000565354 STXBP1P61764 594 aaKnown RBP16.37■□□□□ 0.21
CLN3-217ENST00000565354 HERVK_113P63132 956 aa16.37■□□□□ 0.21
CLN3-217ENST00000565354 SKP1P63208 163 aa16.37■□□□□ 0.21
CLN3-217ENST00000565354 PHEXP78562 749 aa16.37■□□□□ 0.21
CLN3-217ENST00000565354 NCF4Q15080 339 aa16.37■□□□□ 0.21
CLN3-217ENST00000565354 FHL5Q5TD97 284 aa16.37■□□□□ 0.21
CLN3-217ENST00000565354 LIPJQ5W064 366 aa16.37■□□□□ 0.21
CLN3-217ENST00000565354 ZNF385CQ66K41 422 aaPredicted RBP16.37■□□□□ 0.21
CLN3-217ENST00000565354 GRHL2Q6ISB3 625 aa16.37■□□□□ 0.21
CLN3-217ENST00000565354 LCN10Q6JVE6 187 aa16.37■□□□□ 0.21
CLN3-217ENST00000565354 FAM198BQ6UWH4 519 aa16.37■□□□□ 0.21
CLN3-217ENST00000565354 ZYG11AQ6WRX3 759 aa16.37■□□□□ 0.21
CLN3-217ENST00000565354 ABHD13Q7L211 337 aa16.37■□□□□ 0.21
CLN3-217ENST00000565354 TMEM151AQ8N4L1 468 aa16.37■□□□□ 0.21
CLN3-217ENST00000565354 BANPQ8N9N5 519 aa16.37■□□□□ 0.21
CLN3-217ENST00000565354 ANKRD53Q8N9V6 530 aa16.37■□□□□ 0.21
CLN3-217ENST00000565354 KCT2Q8NC54 265 aa16.37■□□□□ 0.21
CLN3-217ENST00000565354 GALNT11Q8NCW6 608 aa16.37■□□□□ 0.21
CLN3-217ENST00000565354 NT5CQ8TCD5 201 aa16.37■□□□□ 0.21
CLN3-217ENST00000565354 REPS1Q96D71 796 aa16.37■□□□□ 0.21
CLN3-217ENST00000565354 TM4SF19Q96DZ7 209 aa16.37■□□□□ 0.21
CLN3-217ENST00000565354 ERVK-6Q9BXR3 956 aa16.37■□□□□ 0.21
CLN3-217ENST00000565354 MKS1Q9NXB0 559 aa16.37■□□□□ 0.21
CLN3-217ENST00000565354 EMCNQ9ULC0 261 aa16.37■□□□□ 0.21
CLN3-217ENST00000565354 VPS4AQ9UN37 437 aa16.37■□□□□ 0.21
CLN3-217ENST00000565354 ABCA12Q86UK0 2595 aa16.37■□□□□ 0.21
CLN3-217ENST00000565354 SPTBP11277 2137 aa16.37■□□□□ 0.21
CLN3-217ENST00000565354 MED13Q9UHV7 2174 aa16.37■□□□□ 0.21
CLN3-217ENST00000565354 TNRC6AQ8NDV7 1962 aaKnown RBP16.37■□□□□ 0.21
CLN3-217ENST00000565354 DOPEY1Q5JWR5 2465 aa16.36■□□□□ 0.21
CLN3-217ENST00000565354 A0A0A6YYC8 382 aaPredicted RBP16.36■□□□□ 0.21
CLN3-217ENST00000565354 I3L1I5 382 aaPredicted RBP16.36■□□□□ 0.21
CLN3-217ENST00000565354 UGDHO60701 494 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms