RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 LANCL2Q9NS86 450 aa8.61□□□□□ -1.03
HDDC3-204ENST00000559834 PPT2Q9UMR5 302 aa8.61□□□□□ -1.03
HDDC3-204ENST00000559834 CPAMD8Q8IZJ3 1885 aa8.61□□□□□ -1.03
HDDC3-204ENST00000559834 SCN3AQ9NY46 2000 aa8.61□□□□□ -1.03
HDDC3-204ENST00000559834 GTF3C1Q12789 2109 aa8.6□□□□□ -1.03
HDDC3-204ENST00000559834 TRBC2A0A5B9 178 aa8.6□□□□□ -1.03
HDDC3-204ENST00000559834 ZNF860A6NHJ4 632 aa8.6□□□□□ -1.03
HDDC3-204ENST00000559834 USP27XA6NNY8 438 aa8.6□□□□□ -1.03
HDDC3-204ENST00000559834 C19orf84I3L1E1 186 aa8.6□□□□□ -1.03
HDDC3-204ENST00000559834 PSMD12O00232 456 aaPredicted RBP8.6□□□□□ -1.03
HDDC3-204ENST00000559834 NDUFS4O43181 175 aa8.6□□□□□ -1.03
HDDC3-204ENST00000559834 NME2P1O60361 137 aa8.6□□□□□ -1.03
HDDC3-204ENST00000559834 MAN1A2O60476 641 aa8.6□□□□□ -1.03
HDDC3-204ENST00000559834 SERPIND1P05546 499 aa8.6□□□□□ -1.03
HDDC3-204ENST00000559834 CCDC175P0C221 793 aa8.6□□□□□ -1.03
HDDC3-204ENST00000559834 NME2P22392 152 aa8.6□□□□□ -1.03
HDDC3-204ENST00000559834 TPP2P29144 1249 aaPredicted RBP8.6□□□□□ -1.03
HDDC3-204ENST00000559834 CXCR5P32302 372 aa8.6□□□□□ -1.03
HDDC3-204ENST00000559834 PTGS2P35354 604 aa8.6□□□□□ -1.03
HDDC3-204ENST00000559834 AHRP35869 848 aa8.6□□□□□ -1.03
HDDC3-204ENST00000559834 ST13P50502 369 aaKnown RBP8.6□□□□□ -1.03
HDDC3-204ENST00000559834 HLCSP50747 726 aa8.6□□□□□ -1.03
HDDC3-204ENST00000559834 AP1S2P56377 157 aa8.6□□□□□ -1.03
HDDC3-204ENST00000559834 MLF1P58340 268 aa8.6□□□□□ -1.03
HDDC3-204ENST00000559834 IL2P60568 153 aa8.6□□□□□ -1.03
HDDC3-204ENST00000559834 CSHL1Q14406 222 aa8.6□□□□□ -1.03
HDDC3-204ENST00000559834 DEFB134Q4QY38 66 aa8.6□□□□□ -1.03
HDDC3-204ENST00000559834 HSP90AA5PQ58FG0 334 aa8.6□□□□□ -1.03
HDDC3-204ENST00000559834 PAQR3Q6TCH7 311 aa8.6□□□□□ -1.03
HDDC3-204ENST00000559834 QSOX2Q6ZRP7 698 aa8.6□□□□□ -1.03
HDDC3-204ENST00000559834 AFAP1L2Q8N4X5 818 aa8.6□□□□□ -1.03
HDDC3-204ENST00000559834 ZNF740Q8NDX6 193 aa8.6□□□□□ -1.03
HDDC3-204ENST00000559834 TRPV3Q8NET8 790 aa8.6□□□□□ -1.03
HDDC3-204ENST00000559834 OR4K1Q8NGD4 311 aa8.6□□□□□ -1.03
HDDC3-204ENST00000559834 OR5T3Q8NGG3 340 aa8.6□□□□□ -1.03
HDDC3-204ENST00000559834 TSLPQ969D9 159 aa8.6□□□□□ -1.03
HDDC3-204ENST00000559834 SDCCAG3Q96C92 435 aa8.6□□□□□ -1.03
HDDC3-204ENST00000559834 RBCK1Q9BYM8 510 aa8.6□□□□□ -1.03
HDDC3-204ENST00000559834 DEFB126Q9BYW3 111 aa8.6□□□□□ -1.03
HDDC3-204ENST00000559834 ENKD1Q9H0I2 346 aa8.6□□□□□ -1.03
HDDC3-204ENST00000559834 MCCC2Q9HCC0 563 aa8.6□□□□□ -1.03
HDDC3-204ENST00000559834 IARS2Q9NSE4 1012 aaKnown RBP8.6□□□□□ -1.03
HDDC3-204ENST00000559834 ARL15Q9NXU5 204 aa8.6□□□□□ -1.03
HDDC3-204ENST00000559834 ZFP69BQ9UJL9 534 aa8.6□□□□□ -1.03
HDDC3-204ENST00000559834 ADAMTS6Q9UKP5 1117 aa8.6□□□□□ -1.03
HDDC3-204ENST00000559834 KLF13Q9Y2Y9 288 aaPredicted RBP8.6□□□□□ -1.03
HDDC3-204ENST00000559834 TEP1Q99973 2627 aaKnown RBP8.6□□□□□ -1.03
HDDC3-204ENST00000559834 FOXO6A8MYZ6 492 aa8.59□□□□□ -1.03
HDDC3-204ENST00000559834 TFECO14948 347 aaPredicted RBP8.59□□□□□ -1.03
HDDC3-204ENST00000559834 TTC4O95801 387 aa8.59□□□□□ -1.03
HDDC3-204ENST00000559834 F7P08709 466 aaPredicted RBP8.59□□□□□ -1.03
HDDC3-204ENST00000559834 ZNF888P0CJ79 500 aaPredicted RBP8.59□□□□□ -1.03
HDDC3-204ENST00000559834 RNH1P13489 461 aaKnown RBP8.59□□□□□ -1.03
HDDC3-204ENST00000559834 TRHRP34981 398 aaPredicted RBP8.59□□□□□ -1.03
HDDC3-204ENST00000559834 CLCN2P51788 898 aa8.59□□□□□ -1.03
HDDC3-204ENST00000559834 TLE4Q04727 773 aa8.59□□□□□ -1.03
HDDC3-204ENST00000559834 DHX9Q08211 1270 aaKnown RBP8.59□□□□□ -1.03
HDDC3-204ENST00000559834 CDSNQ15517 529 aa8.59□□□□□ -1.03
HDDC3-204ENST00000559834 PHKG1Q16816 387 aa8.59□□□□□ -1.03
HDDC3-204ENST00000559834 ZNF468Q5VIY5 522 aaPredicted RBP8.59□□□□□ -1.03
HDDC3-204ENST00000559834 PAOXQ6QHF9 649 aa8.59□□□□□ -1.03
HDDC3-204ENST00000559834 SPNS3Q6ZMD2 512 aa8.59□□□□□ -1.03
HDDC3-204ENST00000559834 MEX3BQ6ZN04 569 aaKnown RBP8.59□□□□□ -1.03
HDDC3-204ENST00000559834 MBOAT1Q6ZNC8 495 aa8.59□□□□□ -1.03
HDDC3-204ENST00000559834 SHISA5Q8N114 240 aa8.59□□□□□ -1.03
HDDC3-204ENST00000559834 TMEM156Q8N614 296 aa8.59□□□□□ -1.03
HDDC3-204ENST00000559834 CPSF7Q8N684 471 aaKnown RBP8.59□□□□□ -1.03
HDDC3-204ENST00000559834 C2CD4AQ8NCU7 369 aaPredicted RBP8.59□□□□□ -1.03
HDDC3-204ENST00000559834 OR56A3Q8NH54 315 aa8.59□□□□□ -1.03
HDDC3-204ENST00000559834 FAM57AQ8TBR7 257 aa8.59□□□□□ -1.03
HDDC3-204ENST00000559834 NT5CQ8TCD5 201 aa8.59□□□□□ -1.03
HDDC3-204ENST00000559834 ASB5Q8WWX0 329 aa8.59□□□□□ -1.03
HDDC3-204ENST00000559834 SIGLEC10Q96LC7 697 aa8.59□□□□□ -1.03
HDDC3-204ENST00000559834 DMRTA2Q96SC8 542 aa8.59□□□□□ -1.03
HDDC3-204ENST00000559834 NAP1L3Q99457 506 aaPredicted RBP8.59□□□□□ -1.03
HDDC3-204ENST00000559834 NDNQ99608 321 aa8.59□□□□□ -1.03
HDDC3-204ENST00000559834 PRDM9Q9NQV7 894 aa8.59□□□□□ -1.03
HDDC3-204ENST00000559834 IGSF5Q9NSI5 407 aa8.59□□□□□ -1.03
HDDC3-204ENST00000559834 SH2B3Q9UQQ2 575 aa8.59□□□□□ -1.03
HDDC3-204ENST00000559834 ASB1Q9Y576 335 aa8.59□□□□□ -1.03
HDDC3-204ENST00000559834 F8P00451 2351 aa8.58□□□□□ -1.04
HDDC3-204ENST00000559834 A0A1B0GTH9 108 aa8.58□□□□□ -1.04
HDDC3-204ENST00000559834 SAGE2PA6NJ88 616 aa8.58□□□□□ -1.04
HDDC3-204ENST00000559834 PEX1O43933 1283 aa8.58□□□□□ -1.04
HDDC3-204ENST00000559834 GUCA1CO95843 209 aa8.58□□□□□ -1.04
HDDC3-204ENST00000559834 TPOP07202 933 aa8.58□□□□□ -1.04
HDDC3-204ENST00000559834 ENO2P09104 434 aaPredicted RBP8.58□□□□□ -1.04
HDDC3-204ENST00000559834 PGAM1P18669 254 aa8.58□□□□□ -1.04
HDDC3-204ENST00000559834 MAGEA3P43357 314 aa8.58□□□□□ -1.04
HDDC3-204ENST00000559834 SCTRP47872 440 aa8.58□□□□□ -1.04
HDDC3-204ENST00000559834 MEOX1P50221 254 aa8.58□□□□□ -1.04
HDDC3-204ENST00000559834 ITGA8P53708 1063 aa8.58□□□□□ -1.04
HDDC3-204ENST00000559834 OLR1P78380 273 aa8.58□□□□□ -1.04
HDDC3-204ENST00000559834 BTG2P78543 158 aa8.58□□□□□ -1.04
HDDC3-204ENST00000559834 HSF1Q00613 529 aa8.58□□□□□ -1.04
HDDC3-204ENST00000559834 PDAP1Q13442 181 aaKnown RBP8.58□□□□□ -1.04
HDDC3-204ENST00000559834 KCTD19Q17RG1 926 aaPredicted RBP8.58□□□□□ -1.04
HDDC3-204ENST00000559834 RNFT1Q5M7Z0 435 aa8.58□□□□□ -1.04
HDDC3-204ENST00000559834 TTC27Q6P3X3 843 aa8.58□□□□□ -1.04
HDDC3-204ENST00000559834 ARHGAP11AQ6P4F7 1023 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms