RNA–Protein interactions for RNA: ENST00000559556.5

TPM1-220, Transcript of tropomyosin 1, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene TPM1, Length 977 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-220ENST00000559556 SLC16A5O15375 505 aa12.29□□□□□ -0.44
TPM1-220ENST00000559556 NDUFS4O43181 175 aa12.29□□□□□ -0.44
TPM1-220ENST00000559556 ASNA1O43681 348 aa12.29□□□□□ -0.44
TPM1-220ENST00000559556 NME2P1O60361 137 aa12.29□□□□□ -0.44
TPM1-220ENST00000559556 GALR3O60755 368 aaPredicted RBP12.29□□□□□ -0.44
TPM1-220ENST00000559556 SP1P08047 785 aa12.29□□□□□ -0.44
TPM1-220ENST00000559556 CCDC175P0C221 793 aa12.29□□□□□ -0.44
TPM1-220ENST00000559556 NPPBP16860 134 aa12.29□□□□□ -0.44
TPM1-220ENST00000559556 NME2P22392 152 aa12.29□□□□□ -0.44
TPM1-220ENST00000559556 SSTR2P30874 369 aa12.29□□□□□ -0.44
TPM1-220ENST00000559556 OR4D2P58180 307 aa12.29□□□□□ -0.44
TPM1-220ENST00000559556 SKP1P63208 163 aa12.29□□□□□ -0.44
TPM1-220ENST00000559556 OC90Q02509 493 aaPredicted RBP12.29□□□□□ -0.44
TPM1-220ENST00000559556 ACTN3Q08043 901 aaPredicted RBP12.29□□□□□ -0.44
TPM1-220ENST00000559556 PWP1Q13610 501 aa12.29□□□□□ -0.44
TPM1-220ENST00000559556 PHKG1Q16816 387 aa12.29□□□□□ -0.44
TPM1-220ENST00000559556 STRA8Q7Z7C7 330 aa12.29□□□□□ -0.44
TPM1-220ENST00000559556 PALM2Q8IXS6 379 aa12.29□□□□□ -0.44
TPM1-220ENST00000559556 MYO1HQ8N1T3 1032 aa12.29□□□□□ -0.44
TPM1-220ENST00000559556 GHDCQ8N2G8 530 aa12.29□□□□□ -0.44
TPM1-220ENST00000559556 NAT8LQ8N9F0 302 aa12.29□□□□□ -0.44
TPM1-220ENST00000559556 ACBD4Q8NC06 268 aa12.29□□□□□ -0.44
TPM1-220ENST00000559556 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.29□□□□□ -0.44
TPM1-220ENST00000559556 C2CD4AQ8NCU7 369 aaPredicted RBP12.29□□□□□ -0.44
TPM1-220ENST00000559556 TBC1D20Q96BZ9 403 aa12.29□□□□□ -0.44
TPM1-220ENST00000559556 OLFM1Q99784 485 aa12.29□□□□□ -0.44
TPM1-220ENST00000559556 LRFN1Q9P244 771 aa12.29□□□□□ -0.44
TPM1-220ENST00000559556 NPIPA1Q9UND3 350 aa12.29□□□□□ -0.44
TPM1-220ENST00000559556 MAD1L1Q9Y6D9 718 aa12.29□□□□□ -0.44
TPM1-220ENST00000559556 TRBC2A0A5B9 178 aa12.28□□□□□ -0.44
TPM1-220ENST00000559556 NDC80O14777 642 aa12.28□□□□□ -0.44
TPM1-220ENST00000559556 SLC25A12O75746 678 aa12.28□□□□□ -0.44
TPM1-220ENST00000559556 ABOP16442 354 aa12.28□□□□□ -0.44
TPM1-220ENST00000559556 ZNF24P17028 368 aa12.28□□□□□ -0.44
TPM1-220ENST00000559556 ALOX12P18054 663 aa12.28□□□□□ -0.44
TPM1-220ENST00000559556 JAK1P23458 1154 aa12.28□□□□□ -0.44
TPM1-220ENST00000559556 CCR8P51685 355 aa12.28□□□□□ -0.44
TPM1-220ENST00000559556 CDKN2DP55273 166 aa12.28□□□□□ -0.44
TPM1-220ENST00000559556 AP1S2P56377 157 aa12.28□□□□□ -0.44
TPM1-220ENST00000559556 CRYMQ14894 314 aa12.28□□□□□ -0.44
TPM1-220ENST00000559556 CYP1B1Q16678 543 aa12.28□□□□□ -0.44
TPM1-220ENST00000559556 RBM20Q5T481 1227 aaKnown RBP12.28□□□□□ -0.44
TPM1-220ENST00000559556 ZNF468Q5VIY5 522 aaPredicted RBP12.28□□□□□ -0.44
TPM1-220ENST00000559556 DUPD1Q68J44 220 aa12.28□□□□□ -0.44
TPM1-220ENST00000559556 SLC25A25Q6KCM7 469 aa12.28□□□□□ -0.44
TPM1-220ENST00000559556 NIPAL1Q6NVV3 410 aa12.28□□□□□ -0.44
TPM1-220ENST00000559556 PAQR3Q6TCH7 311 aa12.28□□□□□ -0.44
TPM1-220ENST00000559556 QSOX2Q6ZRP7 698 aa12.28□□□□□ -0.44
TPM1-220ENST00000559556 PNPLA5Q7Z6Z6 429 aaPredicted RBP12.28□□□□□ -0.44
TPM1-220ENST00000559556 RPS19BP1Q86WX3 136 aaKnown RBP12.28□□□□□ -0.44
TPM1-220ENST00000559556 ZNF227Q86WZ6 799 aa12.28□□□□□ -0.44
TPM1-220ENST00000559556 ARMC10Q8N2F6 343 aa12.28□□□□□ -0.44
TPM1-220ENST00000559556 RASGEF1CQ8N431 466 aa12.28□□□□□ -0.44
TPM1-220ENST00000559556 KIF2BQ8N4N8 673 aa12.28□□□□□ -0.44
TPM1-220ENST00000559556 OR56A3Q8NH54 315 aa12.28□□□□□ -0.44
TPM1-220ENST00000559556 AGAP11Q8TF27 550 aa12.28□□□□□ -0.44
TPM1-220ENST00000559556 MAGOHBQ96A72 148 aaKnown RBP12.28□□□□□ -0.44
TPM1-220ENST00000559556 C14orf79Q96F83 325 aa12.28□□□□□ -0.44
TPM1-220ENST00000559556 OR4K3Q96R72 315 aa12.28□□□□□ -0.44
TPM1-220ENST00000559556 DMRTA2Q96SC8 542 aa12.28□□□□□ -0.44
TPM1-220ENST00000559556 NDNQ99608 321 aa12.28□□□□□ -0.44
TPM1-220ENST00000559556 CDCP1Q9H5V8 836 aa12.28□□□□□ -0.44
TPM1-220ENST00000559556 TRIM45Q9H8W5 580 aaPredicted RBP12.28□□□□□ -0.44
TPM1-220ENST00000559556 IARS2Q9NSE4 1012 aaKnown RBP12.28□□□□□ -0.44
TPM1-220ENST00000559556 NSD1Q96L73 2696 aaPredicted RBP12.27□□□□□ -0.44
TPM1-220ENST00000559556 TCRBV16S1A1N1A0A5B0 115 aa12.27□□□□□ -0.45
TPM1-220ENST00000559556 SAGE2PA6NJ88 616 aa12.27□□□□□ -0.45
TPM1-220ENST00000559556 E9PLN8 166 aa12.27□□□□□ -0.45
TPM1-220ENST00000559556 CHST10O43529 356 aa12.27□□□□□ -0.45
TPM1-220ENST00000559556 OR1F1O43749 312 aa12.27□□□□□ -0.45
TPM1-220ENST00000559556 TSPAN12O95859 305 aa12.27□□□□□ -0.45
TPM1-220ENST00000559556 TPP2P29144 1249 aaPredicted RBP12.27□□□□□ -0.45
TPM1-220ENST00000559556 KIR3DL1P43629 444 aa12.27□□□□□ -0.45
TPM1-220ENST00000559556 MEF2AQ02078 507 aaPredicted RBP12.27□□□□□ -0.45
TPM1-220ENST00000559556 MAPKAPK3Q16644 382 aa12.27□□□□□ -0.45
TPM1-220ENST00000559556 DEFB134Q4QY38 66 aa12.27□□□□□ -0.45
TPM1-220ENST00000559556 RNFT1Q5M7Z0 435 aa12.27□□□□□ -0.45
TPM1-220ENST00000559556 CCDC137Q6PK04 289 aaKnown RBP12.27□□□□□ -0.45
TPM1-220ENST00000559556 NCCRP1Q6ZVX7 275 aaPredicted RBP12.27□□□□□ -0.45
TPM1-220ENST00000559556 GALNT7Q86SF2 657 aa12.27□□□□□ -0.45
TPM1-220ENST00000559556 DOLPP1Q86YN1 238 aa12.27□□□□□ -0.45
TPM1-220ENST00000559556 MED12LQ86YW9 2145 aa12.27□□□□□ -0.45
TPM1-220ENST00000559556 CNTN4Q8IWV2 1026 aa12.27□□□□□ -0.45
TPM1-220ENST00000559556 CPSF7Q8N684 471 aaKnown RBP12.27□□□□□ -0.45
TPM1-220ENST00000559556 NT5CQ8TCD5 201 aa12.27□□□□□ -0.45
TPM1-220ENST00000559556 ALKBH8Q96BT7 664 aaKnown RBP12.27□□□□□ -0.45
TPM1-220ENST00000559556 PYCR2Q96C36 320 aa12.27□□□□□ -0.45
TPM1-220ENST00000559556 LINGO1Q96FE5 620 aa12.27□□□□□ -0.45
TPM1-220ENST00000559556 SNF8Q96H20 258 aa12.27□□□□□ -0.45
TPM1-220ENST00000559556 SPOCK3Q9BQ16 436 aa12.27□□□□□ -0.45
TPM1-220ENST00000559556 TREX2Q9BQ50 279 aaPredicted RBP12.27□□□□□ -0.45
TPM1-220ENST00000559556 VKORC1Q9BQB6 163 aa12.27□□□□□ -0.45
TPM1-220ENST00000559556 ASB1Q9Y576 335 aa12.27□□□□□ -0.45
TPM1-220ENST00000559556 MED12Q93074 2177 aa12.26□□□□□ -0.45
TPM1-220ENST00000559556 IGKV3D-11A0A0A0MRZ8 115 aa12.26□□□□□ -0.45
TPM1-220ENST00000559556 ADAM10O14672 748 aa12.26□□□□□ -0.45
TPM1-220ENST00000559556 PRMT3O60678 531 aa12.26□□□□□ -0.45
TPM1-220ENST00000559556 HIST1H2AGP0C0S8 130 aaPredicted RBP12.26□□□□□ -0.45
TPM1-220ENST00000559556 ZNF888P0CJ79 500 aaPredicted RBP12.26□□□□□ -0.45
TPM1-220ENST00000559556 PGAM1P18669 254 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms