RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 ATRXP46100 2492 aa12.88□□□□□ -0.35
SHMT2-228ENST00000557302 IGLV3-12A0A075B6K2 115 aa12.88□□□□□ -0.35
SHMT2-228ENST00000557302 VSTM2BA6NLU5 285 aa12.88□□□□□ -0.35
SHMT2-228ENST00000557302 SGK494L7N484 410 aa12.88□□□□□ -0.35
SHMT2-228ENST00000557302 FFAR3O14843 346 aa12.88□□□□□ -0.35
SHMT2-228ENST00000557302 GPR42O15529 346 aa12.88□□□□□ -0.35
SHMT2-228ENST00000557302 PLIN3O60664 434 aa12.88□□□□□ -0.35
SHMT2-228ENST00000557302 GALR3O60755 368 aaPredicted RBP12.88□□□□□ -0.35
SHMT2-228ENST00000557302 RDH16O75452 317 aa12.88□□□□□ -0.35
SHMT2-228ENST00000557302 KLHL18O94889 574 aa12.88□□□□□ -0.35
SHMT2-228ENST00000557302 PROCP04070 461 aa12.88□□□□□ -0.35
SHMT2-228ENST00000557302 UMODP07911 640 aa12.88□□□□□ -0.35
SHMT2-228ENST00000557302 FURINP09958 794 aa12.88□□□□□ -0.35
SHMT2-228ENST00000557302 ZGLP1P0C6A0 271 aa12.88□□□□□ -0.35
SHMT2-228ENST00000557302 MYL2P10916 166 aa12.88□□□□□ -0.35
SHMT2-228ENST00000557302 PCNAP12004 261 aa12.88□□□□□ -0.35
SHMT2-228ENST00000557302 SERPINB1P30740 379 aa12.88□□□□□ -0.35
SHMT2-228ENST00000557302 OTX2P32243 289 aa12.88□□□□□ -0.35
SHMT2-228ENST00000557302 CCNG1P51959 295 aa12.88□□□□□ -0.35
SHMT2-228ENST00000557302 FOXL2P58012 376 aa12.88□□□□□ -0.35
SHMT2-228ENST00000557302 MAT1AQ00266 395 aaKnown RBP12.88□□□□□ -0.35
SHMT2-228ENST00000557302 HYAL2Q12891 473 aa12.88□□□□□ -0.35
SHMT2-228ENST00000557302 SSPNQ14714 243 aa12.88□□□□□ -0.35
SHMT2-228ENST00000557302 RBBP7Q16576 425 aa12.88□□□□□ -0.35
SHMT2-228ENST00000557302 TBR1Q16650 682 aa12.88□□□□□ -0.35
SHMT2-228ENST00000557302 SYT16Q17RD7 645 aa12.88□□□□□ -0.35
SHMT2-228ENST00000557302 DEFB134Q4QY38 66 aa12.88□□□□□ -0.35
SHMT2-228ENST00000557302 BORAQ6PGQ7 559 aa12.88□□□□□ -0.35
SHMT2-228ENST00000557302 VN1R5Q7Z5H4 357 aa12.88□□□□□ -0.35
SHMT2-228ENST00000557302 PDSS2Q86YH6 399 aa12.88□□□□□ -0.35
SHMT2-228ENST00000557302 LAS2Q8IYD9 372 aa12.88□□□□□ -0.35
SHMT2-228ENST00000557302 PRSS58Q8IYP2 241 aa12.88□□□□□ -0.35
SHMT2-228ENST00000557302 IQCKQ8N0W5 287 aa12.88□□□□□ -0.35
SHMT2-228ENST00000557302 CCDC63Q8NA47 563 aa12.88□□□□□ -0.35
SHMT2-228ENST00000557302 OR7G3Q8NG95 312 aa12.88□□□□□ -0.35
SHMT2-228ENST00000557302 ADAMTS17Q8TE56 1095 aa12.88□□□□□ -0.35
SHMT2-228ENST00000557302 UTP15Q8TED0 518 aaKnown RBP12.88□□□□□ -0.35
SHMT2-228ENST00000557302 ZNF483Q8TF39 744 aaPredicted RBP12.88□□□□□ -0.35
SHMT2-228ENST00000557302 THAP4Q8WY91 577 aa12.88□□□□□ -0.35
SHMT2-228ENST00000557302 EXTL1Q92935 676 aa12.88□□□□□ -0.35
SHMT2-228ENST00000557302 GAL3ST3Q96A11 431 aa12.88□□□□□ -0.35
SHMT2-228ENST00000557302 CCDC126Q96EE4 140 aa12.88□□□□□ -0.35
SHMT2-228ENST00000557302 APOPT1Q96IL0 206 aa12.88□□□□□ -0.35
SHMT2-228ENST00000557302 NSUN5Q96P11 429 aaKnown RBP12.88□□□□□ -0.35
SHMT2-228ENST00000557302 SOX17Q9H6I2 414 aaPredicted RBP12.88□□□□□ -0.35
SHMT2-228ENST00000557302 ZBTB26Q9HCK0 441 aa12.88□□□□□ -0.35
SHMT2-228ENST00000557302 SEMA4BQ9NPR2 832 aaPredicted RBP12.88□□□□□ -0.35
SHMT2-228ENST00000557302 C14orf105Q9NVL8 296 aa12.88□□□□□ -0.35
SHMT2-228ENST00000557302 MKS1Q9NXB0 559 aa12.88□□□□□ -0.35
SHMT2-228ENST00000557302 HCN3Q9P1Z3 774 aa12.88□□□□□ -0.35
SHMT2-228ENST00000557302 MAN2B2Q9Y2E5 1009 aa12.88□□□□□ -0.35
SHMT2-228ENST00000557302 RNF11Q9Y3C5 154 aa12.88□□□□□ -0.35
SHMT2-228ENST00000557302 PCDHGA11Q9Y5H2 935 aa12.88□□□□□ -0.35
SHMT2-228ENST00000557302 LRIT2A6NDA9 550 aa12.87□□□□□ -0.35
SHMT2-228ENST00000557302 ZNF860A6NHJ4 632 aa12.87□□□□□ -0.35
SHMT2-228ENST00000557302 ERVH48-1M5A8F1 160 aa12.87□□□□□ -0.35
SHMT2-228ENST00000557302 OR7A17O14581 309 aa12.87□□□□□ -0.35
SHMT2-228ENST00000557302 RGS16O15492 202 aaPredicted RBP12.87□□□□□ -0.35
SHMT2-228ENST00000557302 SUPT7LO94864 414 aa12.87□□□□□ -0.35
SHMT2-228ENST00000557302 CLDN9O95484 217 aa12.87□□□□□ -0.35
SHMT2-228ENST00000557302 OTCP00480 354 aa12.87□□□□□ -0.35
SHMT2-228ENST00000557302 IMPDH1P20839 514 aa12.87□□□□□ -0.35
SHMT2-228ENST00000557302 HNRNPH1P31943 449 aaKnown RBP12.87□□□□□ -0.35
SHMT2-228ENST00000557302 CCR10P46092 362 aa12.87□□□□□ -0.35
SHMT2-228ENST00000557302 PRKAA2P54646 552 aa12.87□□□□□ -0.35
SHMT2-228ENST00000557302 RAB8AP61006 207 aa12.87□□□□□ -0.35
SHMT2-228ENST00000557302 PHEXP78562 749 aa12.87□□□□□ -0.35
SHMT2-228ENST00000557302 TRAF3Q13114 568 aa12.87□□□□□ -0.35
SHMT2-228ENST00000557302 DDX39BQ13838 428 aaKnown RBP12.87□□□□□ -0.35
SHMT2-228ENST00000557302 VWA2Q5GFL6 755 aa12.87□□□□□ -0.35
SHMT2-228ENST00000557302 ZNF678Q5SXM1 525 aa12.87□□□□□ -0.35
SHMT2-228ENST00000557302 CEP85LQ5SZL2 805 aa12.87□□□□□ -0.35
SHMT2-228ENST00000557302 ADNP2Q6IQ32 1131 aa12.87□□□□□ -0.35
SHMT2-228ENST00000557302 ZYG11AQ6WRX3 759 aa12.87□□□□□ -0.35
SHMT2-228ENST00000557302 SHISA6Q6ZSJ9 500 aa12.87□□□□□ -0.35
SHMT2-228ENST00000557302 RPS27LQ71UM5 84 aaKnown RBP12.87□□□□□ -0.35
SHMT2-228ENST00000557302 MRGPREQ86SM8 312 aa12.87□□□□□ -0.35
SHMT2-228ENST00000557302 CROCCP2Q86T23 111 aa12.87□□□□□ -0.35
SHMT2-228ENST00000557302 BANPQ8N9N5 519 aa12.87□□□□□ -0.35
SHMT2-228ENST00000557302 L3MBTL4Q8NA19 623 aa12.87□□□□□ -0.35
SHMT2-228ENST00000557302 OR52B6Q8NGF0 335 aa12.87□□□□□ -0.35
SHMT2-228ENST00000557302 OR51Q1Q8NH59 317 aa12.87□□□□□ -0.35
SHMT2-228ENST00000557302 RDH11Q8TC12 318 aa12.87□□□□□ -0.35
SHMT2-228ENST00000557302 ZNF473Q8WTR7 871 aaKnown RBP12.87□□□□□ -0.35
SHMT2-228ENST00000557302 TTC9Q92623 222 aa12.87□□□□□ -0.35
SHMT2-228ENST00000557302 REPS1Q96D71 796 aa12.87□□□□□ -0.35
SHMT2-228ENST00000557302 MS4A6EQ96DS6 147 aa12.87□□□□□ -0.35
SHMT2-228ENST00000557302 FAR2Q96K12 515 aa12.87□□□□□ -0.35
SHMT2-228ENST00000557302 IP6K3Q96PC2 410 aa12.87□□□□□ -0.35
SHMT2-228ENST00000557302 ZIM3Q96PE6 472 aa12.87□□□□□ -0.35
SHMT2-228ENST00000557302 TMEM237Q96Q45 408 aa12.87□□□□□ -0.35
SHMT2-228ENST00000557302 UBL7Q96S82 380 aaPredicted RBP12.87□□□□□ -0.35
SHMT2-228ENST00000557302 SMC6Q96SB8 1091 aa12.87□□□□□ -0.35
SHMT2-228ENST00000557302 CRB3Q9BUF7 120 aa12.87□□□□□ -0.35
SHMT2-228ENST00000557302 NTMT1Q9BV86 223 aa12.87□□□□□ -0.35
SHMT2-228ENST00000557302 TGIF2Q9GZN2 237 aa12.87□□□□□ -0.35
SHMT2-228ENST00000557302 REXO4Q9GZR2 422 aaKnown RBP12.87□□□□□ -0.35
SHMT2-228ENST00000557302 KLHL31Q9H511 634 aa12.87□□□□□ -0.35
SHMT2-228ENST00000557302 SENP1Q9P0U3 644 aa12.87□□□□□ -0.35
SHMT2-228ENST00000557302 ADGRE2Q9UHX3 823 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms