RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 ZNF358Q9NW07 568 aa12.98□□□□□ -0.33
SHMT2-219ENST00000555563 OPTCQ9UBM4 332 aa12.98□□□□□ -0.33
SHMT2-219ENST00000555563 MKL2Q9ULH7 1088 aa12.98□□□□□ -0.33
SHMT2-219ENST00000555563 G3BP2Q9UN86 482 aaKnown RBP12.98□□□□□ -0.33
SHMT2-219ENST00000555563 SCN3AQ9NY46 2000 aa12.97□□□□□ -0.33
SHMT2-219ENST00000555563 K7EPI3 171 aa12.97□□□□□ -0.33
SHMT2-219ENST00000555563 HEXBP07686 556 aa12.97□□□□□ -0.33
SHMT2-219ENST00000555563 SERPINA6P08185 405 aa12.97□□□□□ -0.33
SHMT2-219ENST00000555563 TNFRSF8P28908 595 aa12.97□□□□□ -0.33
SHMT2-219ENST00000555563 RAB8AP61006 207 aa12.97□□□□□ -0.33
SHMT2-219ENST00000555563 OLR1P78380 273 aa12.97□□□□□ -0.33
SHMT2-219ENST00000555563 KCNC4Q03721 635 aa12.97□□□□□ -0.33
SHMT2-219ENST00000555563 EEF1A2Q05639 463 aaKnown RBP12.97□□□□□ -0.33
SHMT2-219ENST00000555563 AIMP2Q13155 320 aaKnown RBP12.97□□□□□ -0.33
SHMT2-219ENST00000555563 CHIT1Q13231 466 aa12.97□□□□□ -0.33
SHMT2-219ENST00000555563 SLC29A2Q14542 456 aa12.97□□□□□ -0.33
SHMT2-219ENST00000555563 NAA30Q147X3 362 aaPredicted RBP12.97□□□□□ -0.33
SHMT2-219ENST00000555563 MYBPC3Q14896 1274 aa12.97□□□□□ -0.33
SHMT2-219ENST00000555563 PFKFB4Q16877 469 aa12.97□□□□□ -0.33
SHMT2-219ENST00000555563 MINDY4Q4G0A6 757 aa12.97□□□□□ -0.33
SHMT2-219ENST00000555563 TOR1AIP1Q5JTV8 583 aa12.97□□□□□ -0.33
SHMT2-219ENST00000555563 MFSD4BQ5TF39 518 aa12.97□□□□□ -0.33
SHMT2-219ENST00000555563 VWA5B1Q5TIE3 1220 aa12.97□□□□□ -0.33
SHMT2-219ENST00000555563 VN1R5Q7Z5H4 357 aa12.97□□□□□ -0.33
SHMT2-219ENST00000555563 GALNT16Q8N428 558 aa12.97□□□□□ -0.33
SHMT2-219ENST00000555563 TTLQ8NG68 377 aa12.97□□□□□ -0.33
SHMT2-219ENST00000555563 CCT6BQ92526 530 aa12.97□□□□□ -0.33
SHMT2-219ENST00000555563 SMAD5Q99717 465 aaKnown RBP12.97□□□□□ -0.33
SHMT2-219ENST00000555563 EFCAB11Q9BUY7 163 aa12.97□□□□□ -0.33
SHMT2-219ENST00000555563 PITHD1Q9GZP4 211 aaPredicted RBP12.97□□□□□ -0.33
SHMT2-219ENST00000555563 CLMPQ9H6B4 373 aa12.97□□□□□ -0.33
SHMT2-219ENST00000555563 ZNF160Q9HCG1 818 aa12.97□□□□□ -0.33
SHMT2-219ENST00000555563 ATP13A2Q9NQ11 1180 aa12.97□□□□□ -0.33
SHMT2-219ENST00000555563 CPSF2Q9P2I0 782 aaKnown RBP12.97□□□□□ -0.33
SHMT2-219ENST00000555563 XPR1Q9UBH6 696 aa12.97□□□□□ -0.33
SHMT2-219ENST00000555563 ANAPC2Q9UJX6 822 aa12.97□□□□□ -0.33
SHMT2-219ENST00000555563 TLN1Q9Y490 2541 aaKnown RBP12.97□□□□□ -0.33
SHMT2-219ENST00000555563 A0A1W2PQ72 361 aa12.96□□□□□ -0.33
SHMT2-219ENST00000555563 LRRC14BA6NHZ5 514 aa12.96□□□□□ -0.33
SHMT2-219ENST00000555563 KLK8O60259 260 aa12.96□□□□□ -0.33
SHMT2-219ENST00000555563 ZNF500O60304 480 aaPredicted RBP12.96□□□□□ -0.33
SHMT2-219ENST00000555563 DNAJB6O75190 326 aa12.96□□□□□ -0.33
SHMT2-219ENST00000555563 HPP00738 406 aa12.96□□□□□ -0.33
SHMT2-219ENST00000555563 SNRPAP09012 282 aaKnown RBP12.96□□□□□ -0.33
SHMT2-219ENST00000555563 COX6A1P12074 109 aa12.96□□□□□ -0.33
SHMT2-219ENST00000555563 ITGA3P26006 1051 aa12.96□□□□□ -0.33
SHMT2-219ENST00000555563 GSTM2P28161 218 aa12.96□□□□□ -0.33
SHMT2-219ENST00000555563 HNRNPH1P31943 449 aaKnown RBP12.96□□□□□ -0.33
SHMT2-219ENST00000555563 CASRP41180 1078 aa12.96□□□□□ -0.33
SHMT2-219ENST00000555563 ALDH18A1P54886 795 aaKnown RBP12.96□□□□□ -0.33
SHMT2-219ENST00000555563 SKP1P63208 163 aa12.96□□□□□ -0.33
SHMT2-219ENST00000555563 IRF8Q02556 426 aa12.96□□□□□ -0.33
SHMT2-219ENST00000555563 Q0VFX4 171 aa12.96□□□□□ -0.33
SHMT2-219ENST00000555563 KLRB1Q12918 225 aa12.96□□□□□ -0.33
SHMT2-219ENST00000555563 E2F2Q14209 437 aa12.96□□□□□ -0.33
SHMT2-219ENST00000555563 TBCCQ15814 346 aa12.96□□□□□ -0.33
SHMT2-219ENST00000555563 TSNAXIP1Q2TAA8 658 aa12.96□□□□□ -0.33
SHMT2-219ENST00000555563 ADGRD1Q6QNK2 874 aa12.96□□□□□ -0.33
SHMT2-219ENST00000555563 ATG14Q6ZNE5 492 aa12.96□□□□□ -0.33
SHMT2-219ENST00000555563 LANCL3Q6ZV70 420 aa12.96□□□□□ -0.33
SHMT2-219ENST00000555563 PEX11GQ96HA9 241 aa12.96□□□□□ -0.33
SHMT2-219ENST00000555563 SEC16BQ96JE7 1060 aa12.96□□□□□ -0.33
SHMT2-219ENST00000555563 VPS50Q96JG6 964 aa12.96□□□□□ -0.33
SHMT2-219ENST00000555563 TRIM4Q9C037 500 aa12.96□□□□□ -0.33
SHMT2-219ENST00000555563 EPN3Q9H201 632 aa12.96□□□□□ -0.33
SHMT2-219ENST00000555563 NT5DC2Q9H857 520 aa12.96□□□□□ -0.33
SHMT2-219ENST00000555563 ZNF451Q9Y4E5 1061 aa12.96□□□□□ -0.33
SHMT2-219ENST00000555563 ZNF462Q96JM2 2506 aa12.96□□□□□ -0.34
SHMT2-219ENST00000555563 LOC102723996A0A087X1L8 192 aa12.95□□□□□ -0.34
SHMT2-219ENST00000555563 IGHV1-45A0A0A0MS14 117 aa12.95□□□□□ -0.34
SHMT2-219ENST00000555563 NSG1A0A0A6YYJ2 146 aa12.95□□□□□ -0.34
SHMT2-219ENST00000555563 OR2W5A6NFC9 320 aa12.95□□□□□ -0.34
SHMT2-219ENST00000555563 URADA6NGE7 173 aa12.95□□□□□ -0.34
SHMT2-219ENST00000555563 PYCARD-AS1I3L0S3 204 aa12.95□□□□□ -0.34
SHMT2-219ENST00000555563 PCDH17O14917 1159 aa12.95□□□□□ -0.34
SHMT2-219ENST00000555563 CLEC3AO75596 197 aa12.95□□□□□ -0.34
SHMT2-219ENST00000555563 CDC123O75794 336 aaPredicted RBP12.95□□□□□ -0.34
SHMT2-219ENST00000555563 SIX3O95343 332 aaPredicted RBP12.95□□□□□ -0.34
SHMT2-219ENST00000555563 TBX6O95947 436 aaPredicted RBP12.95□□□□□ -0.34
SHMT2-219ENST00000555563 ALPPP05187 535 aa12.95□□□□□ -0.34
SHMT2-219ENST00000555563 C8orf89P0DMQ9 161 aa12.95□□□□□ -0.34
SHMT2-219ENST00000555563 SMIM10L1P0DMW3 83 aa12.95□□□□□ -0.34
SHMT2-219ENST00000555563 SOX8P57073 446 aa12.95□□□□□ -0.34
SHMT2-219ENST00000555563 STXBP1P61764 594 aaKnown RBP12.95□□□□□ -0.34
SHMT2-219ENST00000555563 NADK2Q4G0N4 442 aa12.95□□□□□ -0.34
SHMT2-219ENST00000555563 PAGE2BQ5JRK9 111 aa12.95□□□□□ -0.34
SHMT2-219ENST00000555563 NIPAL1Q6NVV3 410 aa12.95□□□□□ -0.34
SHMT2-219ENST00000555563 TMEM205Q6UW68 189 aa12.95□□□□□ -0.34
SHMT2-219ENST00000555563 PARP9Q8IXQ6 854 aa12.95□□□□□ -0.34
SHMT2-219ENST00000555563 TEX9Q8N6V9 391 aa12.95□□□□□ -0.34
SHMT2-219ENST00000555563 PTGR2Q8N8N7 351 aaPredicted RBP12.95□□□□□ -0.34
SHMT2-219ENST00000555563 TEX19Q8NA77 164 aa12.95□□□□□ -0.34
SHMT2-219ENST00000555563 GAL3ST3Q96A11 431 aa12.95□□□□□ -0.34
SHMT2-219ENST00000555563 MS4A6EQ96DS6 147 aa12.95□□□□□ -0.34
SHMT2-219ENST00000555563 MTBPQ96DY7 904 aa12.95□□□□□ -0.34
SHMT2-219ENST00000555563 SMIM10Q96HG1 83 aa12.95□□□□□ -0.34
SHMT2-219ENST00000555563 SCYL1Q96KG9 808 aa12.95□□□□□ -0.34
SHMT2-219ENST00000555563 OR1F2PQ96R84 312 aa12.95□□□□□ -0.34
SHMT2-219ENST00000555563 ZNF552Q9H707 407 aaPredicted RBP12.95□□□□□ -0.34
SHMT2-219ENST00000555563 ANKZF1Q9H8Y5 726 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms