RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 CXCR2P25025 360 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 MAPK3P27361 379 aaPredicted RBP8.49□□□□□ -1.05
YBX3-208ENST00000540447 ZNF648Q5T619 568 aaPredicted RBP8.49□□□□□ -1.05
YBX3-208ENST00000540447 GPR139Q6DWJ6 353 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 ZER1Q7Z7L7 766 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 SLC30A8Q8IWU4 369 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 OR10H5Q8NGA6 315 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 JOSD2Q8TAC2 188 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 DCUN1D4Q92564 292 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 COPS5Q92905 334 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 C14orf79Q96F83 325 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 RNF32Q9H0A6 362 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 SLC6A17Q9H1V8 727 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 TMEM27Q9HBJ8 222 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 CREBZFQ9NS37 354 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 TMPRSS11EQ9UL52 423 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 BIVM-ERCC5R4GMW8 1640 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 MCIDASD6RGH6 385 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 SMLR1H3BR10 107 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 FGF10O15520 208 aaPredicted RBP8.49□□□□□ -1.05
YBX3-208ENST00000540447 SORBS2O94875 1100 aaKnown RBP8.49□□□□□ -1.05
YBX3-208ENST00000540447 CAPNS1P04632 268 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 CXCL8P10145 99 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 CPN1P15169 458 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 ACVR2AP27037 513 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 PTCHD3Q3KNS1 767 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 MEDAGQ5VYS4 303 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 SLC39A4Q6P5W5 647 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 LYSMD2Q8IV50 215 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 C4orf19Q8IY42 314 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 ZNF248Q8NDW4 579 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 OR5T1Q8NG75 326 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 FBXO27Q8NI29 283 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 GRAPLQ8TC17 118 aaPredicted RBP8.49□□□□□ -1.05
YBX3-208ENST00000540447 DPEP2Q9H4A9 486 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 SGK2Q9HBY8 427 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 ZNF878C9JN71 531 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 SLITRK3O94933 977 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 SOX14O95416 240 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 FGF3P11487 239 aaPredicted RBP8.49□□□□□ -1.05
YBX3-208ENST00000540447 TNFRSF17Q02223 184 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 CD47Q08722 323 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 MAP4K2Q12851 820 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 BTG3Q14201 252 aaPredicted RBP8.49□□□□□ -1.05
YBX3-208ENST00000540447 TRAM1Q15629 374 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 CMIPQ8IY22 773 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 SLC2A14Q8TDB8 520 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 C16orf58Q96GQ5 468 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 MFSD14AQ96MC6 490 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 ADAM7Q9H2U9 754 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 C12orf10Q9HB07 376 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 MRPL42Q9Y6G3 142 aaKnown RBP8.49□□□□□ -1.05
YBX3-208ENST00000540447 FAM159BA6NKW6 160 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 CLIC1O00299 241 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 DPYSL4O14531 572 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 ECI2O75521 394 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 SLC25A12O75746 678 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 CYB5AP00167 134 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 MT-ND5P03915 603 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 ZNF20P17024 532 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 PITPNBP48739 271 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 UFM1P61960 85 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 LARS2Q15031 903 aaKnown RBP8.49□□□□□ -1.05
YBX3-208ENST00000540447 TKFCQ3LXA3 575 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 LRIF1Q5T3J3 769 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 CES5AQ6NT32 575 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 ZNF551Q7Z340 670 aaPredicted RBP8.49□□□□□ -1.05
YBX3-208ENST00000540447 MAP4K3Q8IVH8 894 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 DNAJC5GQ8N7S2 189 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 ZFAND1Q8TCF1 268 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 TM9SF4Q92544 642 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 GSX2Q9BZM3 304 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 OSGEPL1Q9H4B0 414 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 ATP13A1Q9HD20 1204 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 A0A1W2PRB8 838 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 SLC12A8A0AV02 714 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 NEMP2A6NFY4 417 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 CAPN14A8MX76 684 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 H7C417 338 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 ERBB2P04626 1255 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 H1F0P07305 194 aaKnown RBP8.49□□□□□ -1.05
YBX3-208ENST00000540447 ANXA4P09525 319 aaPredicted RBP8.49□□□□□ -1.05
YBX3-208ENST00000540447 TRAPPC2P0DI81 140 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 TRAPPC2BP0DI82 140 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 LAMP2P13473 410 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 ENGP17813 658 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 GNMTQ14749 295 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 PNLDC1Q8NA58 520 aaKnown RBP8.49□□□□□ -1.05
YBX3-208ENST00000540447 NETO2Q8NC67 525 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 TRMT10AQ8TBZ6 339 aaKnown RBP8.49□□□□□ -1.05
YBX3-208ENST00000540447 COQ8BQ96D53 544 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 SLC17A6Q9P2U8 582 aa8.49□□□□□ -1.05
YBX3-208ENST00000540447 CD8B2A6NJW9 211 aa8.48□□□□□ -1.05
YBX3-208ENST00000540447 XKRYO14609 159 aa8.48□□□□□ -1.05
YBX3-208ENST00000540447 PIP5K1CO60331 668 aa8.48□□□□□ -1.05
YBX3-208ENST00000540447 CD8BP10966 210 aa8.48□□□□□ -1.05
YBX3-208ENST00000540447 EFNA1P20827 205 aaPredicted RBP8.48□□□□□ -1.05
YBX3-208ENST00000540447 HTR1EP28566 365 aa8.48□□□□□ -1.05
YBX3-208ENST00000540447 MMP12P39900 470 aa8.48□□□□□ -1.05
YBX3-208ENST00000540447 BAG6P46379 1132 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms