RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 TNFRSF10BO14763 440 aa11.3□□□□□ -0.6
SYNPO-204ENST00000519664 SOCS5O75159 536 aa11.3□□□□□ -0.6
SYNPO-204ENST00000519664 TSTQ16762 297 aaKnown RBP11.3□□□□□ -0.6
SYNPO-204ENST00000519664 CRTC1Q6UUV9 634 aa11.3□□□□□ -0.6
SYNPO-204ENST00000519664 UBE2Q1Q7Z7E8 422 aa11.3□□□□□ -0.6
SYNPO-204ENST00000519664 PGBD5Q8N414 524 aa11.3□□□□□ -0.6
SYNPO-204ENST00000519664 GPR26Q8NDV2 337 aa11.3□□□□□ -0.6
SYNPO-204ENST00000519664 ZNF347Q96SE7 839 aa11.3□□□□□ -0.6
SYNPO-204ENST00000519664 FAM120CQ9NX05 1096 aaKnown RBP11.3□□□□□ -0.6
SYNPO-204ENST00000519664 FBXL21Q9UKT6 434 aa11.3□□□□□ -0.6
SYNPO-204ENST00000519664 OARD1Q9Y530 152 aa11.3□□□□□ -0.6
SYNPO-204ENST00000519664 OXSR1O95747 527 aaPredicted RBP11.3□□□□□ -0.6
SYNPO-204ENST00000519664 ETFAP13804 333 aa11.3□□□□□ -0.6
SYNPO-204ENST00000519664 MYL9P24844 172 aa11.3□□□□□ -0.6
SYNPO-204ENST00000519664 CSTF2P33240 577 aaKnown RBP eCLIP11.3□□□□□ -0.6
SYNPO-204ENST00000519664 PGDP52209 483 aa11.3□□□□□ -0.6
SYNPO-204ENST00000519664 CRISP3P54108 245 aa11.3□□□□□ -0.6
SYNPO-204ENST00000519664 MLLT10P55197 1068 aa11.3□□□□□ -0.6
SYNPO-204ENST00000519664 RPP38P78345 283 aaKnown RBP11.3□□□□□ -0.6
SYNPO-204ENST00000519664 ZNF155Q12901 538 aaPredicted RBP11.3□□□□□ -0.6
SYNPO-204ENST00000519664 KIAA1614Q5VZ46 1190 aa11.3□□□□□ -0.6
SYNPO-204ENST00000519664 DNAJB8Q8NHS0 232 aa11.3□□□□□ -0.6
SYNPO-204ENST00000519664 TSPEARQ8WU66 669 aa11.3□□□□□ -0.6
SYNPO-204ENST00000519664 SLC5A11Q8WWX8 675 aa11.3□□□□□ -0.6
SYNPO-204ENST00000519664 SLC30A3Q99726 388 aa11.3□□□□□ -0.6
SYNPO-204ENST00000519664 SLITRK2Q9H156 845 aa11.3□□□□□ -0.6
SYNPO-204ENST00000519664 KCNH6Q9H252 994 aa11.3□□□□□ -0.6
SYNPO-204ENST00000519664 MSRAQ9UJ68 235 aa11.3□□□□□ -0.6
SYNPO-204ENST00000519664 PTBP2Q9UKA9 531 aaKnown RBP11.3□□□□□ -0.6
SYNPO-204ENST00000519664 ZNF860A6NHJ4 632 aa11.3□□□□□ -0.6
SYNPO-204ENST00000519664 SSNA1O43805 119 aa11.3□□□□□ -0.6
SYNPO-204ENST00000519664 RB1P06400 928 aa11.3□□□□□ -0.6
SYNPO-204ENST00000519664 H1F0P07305 194 aaKnown RBP11.3□□□□□ -0.6
SYNPO-204ENST00000519664 CBSLP0DN79 551 aa11.3□□□□□ -0.6
SYNPO-204ENST00000519664 CKMT1AP12532 417 aa11.3□□□□□ -0.6
SYNPO-204ENST00000519664 PTX3P26022 381 aaPredicted RBP11.3□□□□□ -0.6
SYNPO-204ENST00000519664 CBSP35520 551 aa11.3□□□□□ -0.6
SYNPO-204ENST00000519664 PDGFRLQ15198 375 aa11.3□□□□□ -0.6
SYNPO-204ENST00000519664 TOMM20Q15388 145 aa11.3□□□□□ -0.6
SYNPO-204ENST00000519664 FAM219BQ5XKK7 198 aa11.3□□□□□ -0.6
SYNPO-204ENST00000519664 PGM2L1Q6PCE3 622 aa11.3□□□□□ -0.6
SYNPO-204ENST00000519664 LRRTM4Q86VH4 590 aa11.3□□□□□ -0.6
SYNPO-204ENST00000519664 TMEM173Q86WV6 379 aaPredicted RBP11.3□□□□□ -0.6
SYNPO-204ENST00000519664 ATP6V1C2Q8NEY4 427 aa11.3□□□□□ -0.6
SYNPO-204ENST00000519664 NETO1Q8TDF5 533 aa11.3□□□□□ -0.6
SYNPO-204ENST00000519664 NT5C3BQ969T7 300 aa11.3□□□□□ -0.6
SYNPO-204ENST00000519664 ZFP3Q96NJ6 502 aa11.3□□□□□ -0.6
SYNPO-204ENST00000519664 SLC22A12Q96S37 553 aa11.3□□□□□ -0.6
SYNPO-204ENST00000519664 ATOH8Q96SQ7 321 aa11.3□□□□□ -0.6
SYNPO-204ENST00000519664 SPHK2Q9NRA0 654 aa11.3□□□□□ -0.6
SYNPO-204ENST00000519664 COLEC10Q9Y6Z7 277 aa11.3□□□□□ -0.6
SYNPO-204ENST00000519664 FGF19O95750 216 aa11.29□□□□□ -0.6
SYNPO-204ENST00000519664 PRLP01236 227 aa11.29□□□□□ -0.6
SYNPO-204ENST00000519664 SLC10A3P09131 477 aa11.29□□□□□ -0.6
SYNPO-204ENST00000519664 HSD17B1P14061 328 aa11.29□□□□□ -0.6
SYNPO-204ENST00000519664 ZNF30P17039 623 aa11.29□□□□□ -0.6
SYNPO-204ENST00000519664 ZNF763Q0D2J5 394 aa11.29□□□□□ -0.6
SYNPO-204ENST00000519664 RTL4Q6ZR62 310 aa11.29□□□□□ -0.6
SYNPO-204ENST00000519664 CCDC116Q8IYX3 515 aa11.29□□□□□ -0.6
SYNPO-204ENST00000519664 TMEM125Q96AQ2 219 aa11.29□□□□□ -0.6
SYNPO-204ENST00000519664 F2RL3Q96RI0 385 aa11.29□□□□□ -0.6
SYNPO-204ENST00000519664 ELOVL2Q9NXB9 296 aa11.29□□□□□ -0.6
SYNPO-204ENST00000519664 FBXL12Q9NXK8 326 aa11.29□□□□□ -0.6
SYNPO-204ENST00000519664 GPRC5BQ9NZH0 403 aa11.29□□□□□ -0.6
SYNPO-204ENST00000519664 C7orf72A4D263 438 aa11.29□□□□□ -0.6
SYNPO-204ENST00000519664 H3BSH0 61 aa11.29□□□□□ -0.6
SYNPO-204ENST00000519664 MT-ND2P03891 347 aa11.29□□□□□ -0.6
SYNPO-204ENST00000519664 ITIH1P19827 911 aa11.29□□□□□ -0.6
SYNPO-204ENST00000519664 SMU1Q2TAY7 513 aa11.29□□□□□ -0.6
SYNPO-204ENST00000519664 OXR1Q8N573 874 aa11.29□□□□□ -0.6
SYNPO-204ENST00000519664 TRPV1Q8NER1 839 aa11.29□□□□□ -0.6
SYNPO-204ENST00000519664 OR8J3Q8NGG0 315 aa11.29□□□□□ -0.6
SYNPO-204ENST00000519664 OR9A1PQ8NGU1 263 aa11.29□□□□□ -0.6
SYNPO-204ENST00000519664 PIGXQ8TBF5 258 aa11.29□□□□□ -0.6
SYNPO-204ENST00000519664 GEMIN6Q8WXD5 167 aaKnown RBP11.29□□□□□ -0.6
SYNPO-204ENST00000519664 AP3S1Q92572 193 aa11.29□□□□□ -0.6
SYNPO-204ENST00000519664 TRPV5Q9NQA5 729 aa11.29□□□□□ -0.6
SYNPO-204ENST00000519664 TLR9Q9NR96 1032 aa11.29□□□□□ -0.6
SYNPO-204ENST00000519664 FAM118AQ9NWS6 357 aa11.29□□□□□ -0.6
SYNPO-204ENST00000519664 A0A1W2PQ72 361 aa11.29□□□□□ -0.6
SYNPO-204ENST00000519664 FABP12A6NFH5 140 aa11.29□□□□□ -0.6
SYNPO-204ENST00000519664 SLC22A1O15245 554 aa11.29□□□□□ -0.6
SYNPO-204ENST00000519664 FGF4P08620 206 aa11.29□□□□□ -0.6
SYNPO-204ENST00000519664 ATXN1LP0C7T5 689 aaKnown RBP11.29□□□□□ -0.6
SYNPO-204ENST00000519664 PTGER1P34995 402 aa11.29□□□□□ -0.6
SYNPO-204ENST00000519664 ST3GAL4Q11206 333 aa11.29□□□□□ -0.6
SYNPO-204ENST00000519664 CST9Q5W186 159 aa11.29□□□□□ -0.6
SYNPO-204ENST00000519664 FAM91A1Q658Y4 838 aa11.29□□□□□ -0.6
SYNPO-204ENST00000519664 NADSYN1Q6IA69 706 aa11.29□□□□□ -0.6
SYNPO-204ENST00000519664 LCN8Q6JVE9 175 aa11.29□□□□□ -0.6
SYNPO-204ENST00000519664 PRR23BQ6ZRT6 265 aa11.29□□□□□ -0.6
SYNPO-204ENST00000519664 CXXC5Q7LFL8 322 aaKnown RBP11.29□□□□□ -0.6
SYNPO-204ENST00000519664 TMEM126BQ8IUX1 230 aa11.29□□□□□ -0.6
SYNPO-204ENST00000519664 COX18Q8N8Q8 333 aa11.29□□□□□ -0.6
SYNPO-204ENST00000519664 HUS1BQ8NHY5 278 aa11.29□□□□□ -0.6
SYNPO-204ENST00000519664 ZNF563Q8TA94 476 aa11.29□□□□□ -0.6
SYNPO-204ENST00000519664 BPIFB1Q8TDL5 484 aa11.29□□□□□ -0.6
SYNPO-204ENST00000519664 EFHD2Q96C19 240 aaPredicted RBP11.29□□□□□ -0.6
SYNPO-204ENST00000519664 PRICKLE1Q96MT3 831 aaPredicted RBP11.29□□□□□ -0.6
SYNPO-204ENST00000519664 TMEM27Q9HBJ8 222 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms