RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 DUX1O43812 170 aa12.72□□□□□ -0.37
PTPRF-215ENST00000496447 C1orf61Q13536 156 aa12.72□□□□□ -0.37
PTPRF-215ENST00000496447 RUNX3Q13761 415 aa12.72□□□□□ -0.37
PTPRF-215ENST00000496447 RTP2Q5QGT7 225 aa12.72□□□□□ -0.37
PTPRF-215ENST00000496447 TAS1R3Q7RTX0 852 aa12.72□□□□□ -0.37
PTPRF-215ENST00000496447 TICAM1Q8IUC6 712 aa12.72□□□□□ -0.37
PTPRF-215ENST00000496447 OR6N1Q8NGY5 312 aa12.72□□□□□ -0.37
PTPRF-215ENST00000496447 KCNJ9Q92806 393 aa12.72□□□□□ -0.37
PTPRF-215ENST00000496447 COPS4Q9BT78 406 aa12.72□□□□□ -0.37
PTPRF-215ENST00000496447 WDR6Q9NNW5 1121 aaKnown RBP12.72□□□□□ -0.37
PTPRF-215ENST00000496447 ZNF99A8MXY4 864 aaPredicted RBP12.72□□□□□ -0.37
PTPRF-215ENST00000496447 TMEM233B4DJY2 109 aa12.72□□□□□ -0.37
PTPRF-215ENST00000496447 H7BY64 318 aa12.72□□□□□ -0.37
PTPRF-215ENST00000496447 AHSA1O95433 338 aa12.72□□□□□ -0.37
PTPRF-215ENST00000496447 CHRM5P08912 532 aaPredicted RBP12.72□□□□□ -0.37
PTPRF-215ENST00000496447 CYBAP13498 195 aa12.72□□□□□ -0.37
PTPRF-215ENST00000496447 JUNDP17535 347 aa12.72□□□□□ -0.37
PTPRF-215ENST00000496447 MATN1P21941 496 aa12.72□□□□□ -0.37
PTPRF-215ENST00000496447 ELAVL3Q14576 367 aaKnown RBP12.72□□□□□ -0.37
PTPRF-215ENST00000496447 XKRXQ6PP77 449 aa12.72□□□□□ -0.37
PTPRF-215ENST00000496447 ZNF852Q6ZMS4 543 aa12.72□□□□□ -0.37
PTPRF-215ENST00000496447 USP43Q70EL4 1123 aa12.72□□□□□ -0.37
PTPRF-215ENST00000496447 GALNT12Q8IXK2 581 aa12.72□□□□□ -0.37
PTPRF-215ENST00000496447 CLIP4Q8N3C7 705 aa12.72□□□□□ -0.37
PTPRF-215ENST00000496447 PNLDC1Q8NA58 520 aaKnown RBP12.72□□□□□ -0.37
PTPRF-215ENST00000496447 PRAP1Q96NZ9 151 aa12.72□□□□□ -0.37
PTPRF-215ENST00000496447 RC3H2Q9HBD1 1191 aaKnown RBP12.72□□□□□ -0.37
PTPRF-215ENST00000496447 RIMKLBQ9ULI2 386 aa12.72□□□□□ -0.37
PTPRF-215ENST00000496447 PIAS3Q9Y6X2 628 aa12.72□□□□□ -0.37
PTPRF-215ENST00000496447 TTC34A8MYJ7 566 aa12.72□□□□□ -0.37
PTPRF-215ENST00000496447 RCBTB2O95199 551 aa12.72□□□□□ -0.37
PTPRF-215ENST00000496447 SLC18A1P54219 525 aa12.72□□□□□ -0.37
PTPRF-215ENST00000496447 EIF4HQ15056 248 aaKnown RBP12.72□□□□□ -0.37
PTPRF-215ENST00000496447 TMCO2Q7Z6W1 182 aaPredicted RBP12.72□□□□□ -0.37
PTPRF-215ENST00000496447 CEP97Q8IW35 865 aa12.72□□□□□ -0.37
PTPRF-215ENST00000496447 PDE7BQ9NP56 450 aa12.72□□□□□ -0.37
PTPRF-215ENST00000496447 PRTFDC1Q9NRG1 225 aa12.72□□□□□ -0.37
PTPRF-215ENST00000496447 ZDHHC18Q9NUE0 388 aa12.72□□□□□ -0.37
PTPRF-215ENST00000496447 TAS2R7Q9NYW3 318 aa12.72□□□□□ -0.37
PTPRF-215ENST00000496447 FKBP7Q9Y680 259 aa12.72□□□□□ -0.37
PTPRF-215ENST00000496447 C10orf71Q711Q0 1435 aa12.71□□□□□ -0.37
PTPRF-215ENST00000496447 TIMP1P01033 207 aa12.71□□□□□ -0.37
PTPRF-215ENST00000496447 MEF2AQ02078 507 aaPredicted RBP12.71□□□□□ -0.37
PTPRF-215ENST00000496447 ELOAQ14241 798 aaKnown RBP12.71□□□□□ -0.37
PTPRF-215ENST00000496447 C11orf91Q3C1V1 193 aa12.71□□□□□ -0.37
PTPRF-215ENST00000496447 TLDC1Q6P9B6 456 aa12.71□□□□□ -0.37
PTPRF-215ENST00000496447 KLHL36Q8N4N3 616 aa12.71□□□□□ -0.37
PTPRF-215ENST00000496447 TXNDC5Q8NBS9 432 aaKnown RBP12.71□□□□□ -0.37
PTPRF-215ENST00000496447 ZNF717Q9BY31 904 aaPredicted RBP12.71□□□□□ -0.37
PTPRF-215ENST00000496447 RBCK1Q9BYM8 510 aa12.71□□□□□ -0.37
PTPRF-215ENST00000496447 RETREG1Q9H6L5 497 aa12.71□□□□□ -0.37
PTPRF-215ENST00000496447 MAFFQ9ULX9 164 aa12.71□□□□□ -0.37
PTPRF-215ENST00000496447 GRIP1Q9Y3R0 1128 aa12.71□□□□□ -0.37
PTPRF-215ENST00000496447 FAM172BPA6NC97 362 aa12.71□□□□□ -0.37
PTPRF-215ENST00000496447 TGM5O43548 720 aa12.71□□□□□ -0.37
PTPRF-215ENST00000496447 CLPXO76031 633 aa12.71□□□□□ -0.37
PTPRF-215ENST00000496447 FOXN2P32314 431 aa12.71□□□□□ -0.37
PTPRF-215ENST00000496447 TGFBIQ15582 683 aa12.71□□□□□ -0.37
PTPRF-215ENST00000496447 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.71□□□□□ -0.376e-7■■■■□ 23.2
PTPRF-215ENST00000496447 PM20D2Q8IYS1 436 aa12.71□□□□□ -0.37
PTPRF-215ENST00000496447 ASCC1Q8N9N2 400 aaKnown RBP12.71□□□□□ -0.37
PTPRF-215ENST00000496447 C2CD4AQ8NCU7 369 aaPredicted RBP12.71□□□□□ -0.37
PTPRF-215ENST00000496447 IGSF8Q969P0 613 aa12.71□□□□□ -0.37
PTPRF-215ENST00000496447 ADAD1Q96M93 576 aaKnown RBP12.71□□□□□ -0.37
PTPRF-215ENST00000496447 FAM120CQ9NX05 1096 aaKnown RBP12.71□□□□□ -0.37
PTPRF-215ENST00000496447 ABCG2Q9UNQ0 655 aa12.71□□□□□ -0.37
PTPRF-215ENST00000496447 SIGLEC1Q9BZZ2 1709 aa12.71□□□□□ -0.37
PTPRF-215ENST00000496447 A6NCN8 305 aa12.71□□□□□ -0.37
PTPRF-215ENST00000496447 OR6C74A6NCV1 312 aa12.71□□□□□ -0.37
PTPRF-215ENST00000496447 GRXCR1A8MXD5 290 aa12.71□□□□□ -0.37
PTPRF-215ENST00000496447 ZNF648Q5T619 568 aaPredicted RBP12.71□□□□□ -0.37
PTPRF-215ENST00000496447 SLC2A7Q6PXP3 512 aa12.71□□□□□ -0.37
PTPRF-215ENST00000496447 FCGR1BQ92637 280 aa12.71□□□□□ -0.37
PTPRF-215ENST00000496447 CNDP2Q96KP4 475 aaKnown RBP12.71□□□□□ -0.37
PTPRF-215ENST00000496447 TGM7Q96PF1 710 aa12.71□□□□□ -0.37
PTPRF-215ENST00000496447 ERMAPQ96PL5 475 aaPredicted RBP12.71□□□□□ -0.37
PTPRF-215ENST00000496447 SLC39A3Q9BRY0 314 aa12.71□□□□□ -0.37
PTPRF-215ENST00000496447 HSD3B7Q9H2F3 369 aa12.71□□□□□ -0.37
PTPRF-215ENST00000496447 ZDHHC2Q9UIJ5 367 aa12.71□□□□□ -0.37
PTPRF-215ENST00000496447 DNAJB1P25685 340 aa12.71□□□□□ -0.38
PTPRF-215ENST00000496447 E2F2Q14209 437 aa12.71□□□□□ -0.38
PTPRF-215ENST00000496447 PON2Q15165 354 aa12.71□□□□□ -0.38
PTPRF-215ENST00000496447 PCDHAC1Q9H158 963 aa12.71□□□□□ -0.38
PTPRF-215ENST00000496447 VRTNQ9H8Y1 702 aa12.71□□□□□ -0.38
PTPRF-215ENST00000496447 APOBEC3BQ9UH17 382 aaKnown RBP12.71□□□□□ -0.38
PTPRF-215ENST00000496447 FAM170BA6NMN3 283 aa12.7□□□□□ -0.38
PTPRF-215ENST00000496447 I3L521 148 aa12.7□□□□□ -0.38
PTPRF-215ENST00000496447 STC2O76061 302 aa12.7□□□□□ -0.38
PTPRF-215ENST00000496447 DNAJA1P31689 397 aaKnown RBP12.7□□□□□ -0.38
PTPRF-215ENST00000496447 VIPR2P41587 438 aa12.7□□□□□ -0.38
PTPRF-215ENST00000496447 ENTPD1P49961 510 aa12.7□□□□□ -0.38
PTPRF-215ENST00000496447 ADAM8P78325 824 aa12.7□□□□□ -0.38
PTPRF-215ENST00000496447 SWI5Q1ZZU3 235 aa12.7□□□□□ -0.38
PTPRF-215ENST00000496447 RBM48Q5RL73 367 aaKnown RBP12.7□□□□□ -0.38
PTPRF-215ENST00000496447 IDNKQ5T6J7 187 aa12.7□□□□□ -0.38
PTPRF-215ENST00000496447 NPAS3Q8IXF0 933 aa12.7□□□□□ -0.38
PTPRF-215ENST00000496447 C1orf216Q8TAB5 229 aa12.7□□□□□ -0.38
PTPRF-215ENST00000496447 TNFAIP8L1Q8WVP5 186 aa12.7□□□□□ -0.38
PTPRF-215ENST00000496447 SLC2A13Q96QE2 648 aa12.7□□□□□ -0.38
PTPRF-215ENST00000496447 PAAF1Q9BRP4 392 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms