RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 TNFRSF19Q9NS68 423 aa2.41□□□□□ -2.02
VPS50-216ENST00000484954 ZNF581Q9P0T4 197 aa2.41□□□□□ -2.02
VPS50-216ENST00000484954 C5AR2Q9P296 337 aa2.41□□□□□ -2.02
VPS50-216ENST00000484954 POLLQ9UGP5 575 aa2.41□□□□□ -2.02
VPS50-216ENST00000484954 ZNF346Q9UL40 294 aaKnown RBP2.41□□□□□ -2.02
VPS50-216ENST00000484954 COLEC10Q9Y6Z7 277 aa2.41□□□□□ -2.02
VPS50-216ENST00000484954 RTL8CO15255 209 aa2.4□□□□□ -2.03
VPS50-216ENST00000484954 KIF5CO60282 957 aa2.4□□□□□ -2.03
VPS50-216ENST00000484954 THY1P04216 161 aa2.4□□□□□ -2.03
VPS50-216ENST00000484954 ADORA3P0DMS8 318 aa2.4□□□□□ -2.03
VPS50-216ENST00000484954 SRPXP78539 464 aa2.4□□□□□ -2.03
VPS50-216ENST00000484954 ACY1Q03154 408 aa2.4□□□□□ -2.03
VPS50-216ENST00000484954 KNOP1Q1ED39 458 aaKnown RBP2.4□□□□□ -2.03
VPS50-216ENST00000484954 BRINP3Q76B58 766 aa2.4□□□□□ -2.03
VPS50-216ENST00000484954 MCM10Q7L590 875 aa2.4□□□□□ -2.03
VPS50-216ENST00000484954 ADCK1Q86TW2 530 aa2.4□□□□□ -2.03
VPS50-216ENST00000484954 RPAINQ86UA6 219 aa2.4□□□□□ -2.03
VPS50-216ENST00000484954 OR6J1Q8NGC5 347 aa2.4□□□□□ -2.03
VPS50-216ENST00000484954 EXT2Q93063 718 aa2.4□□□□□ -2.03
VPS50-216ENST00000484954 P2RX5Q93086 422 aa2.4□□□□□ -2.03
VPS50-216ENST00000484954 PSMB7Q99436 277 aa2.4□□□□□ -2.03
VPS50-216ENST00000484954 NUDT16L1Q9BRJ7 211 aaKnown RBP2.4□□□□□ -2.03
VPS50-216ENST00000484954 CENPOQ9BU64 300 aa2.4□□□□□ -2.03
VPS50-216ENST00000484954 PAPOLGQ9BWT3 736 aaKnown RBP2.4□□□□□ -2.03
VPS50-216ENST00000484954 GTPBP2Q9BX10 602 aaKnown RBP2.4□□□□□ -2.03
VPS50-216ENST00000484954 SNX25Q9H3E2 840 aa2.4□□□□□ -2.03
VPS50-216ENST00000484954 FNDC4Q9H6D8 234 aaPredicted RBP2.4□□□□□ -2.03
VPS50-216ENST00000484954 B4GALT7Q9UBV7 327 aa2.4□□□□□ -2.03
VPS50-216ENST00000484954 UMODL1Q5DID0 1318 aa2.4□□□□□ -2.03
VPS50-216ENST00000484954 TRGV8A0A0C4DH27 118 aa2.39□□□□□ -2.03
VPS50-216ENST00000484954 PRSS46E5RG02 174 aa2.39□□□□□ -2.03
VPS50-216ENST00000484954 E5RGE8 158 aa2.39□□□□□ -2.03
VPS50-216ENST00000484954 TNFSF12O43508 249 aa2.39□□□□□ -2.03
VPS50-216ENST00000484954 MTRF1O75570 445 aaKnown RBP2.39□□□□□ -2.03
VPS50-216ENST00000484954 SEMA4FO95754 770 aa2.39□□□□□ -2.03
VPS50-216ENST00000484954 MYBL1P10243 752 aa2.39□□□□□ -2.03
VPS50-216ENST00000484954 CD1DP15813 335 aa2.39□□□□□ -2.03
VPS50-216ENST00000484954 ACAT1P24752 427 aaKnown RBP2.39□□□□□ -2.03
VPS50-216ENST00000484954 GIFP27352 417 aa2.39□□□□□ -2.03
VPS50-216ENST00000484954 AIMP1Q12904 312 aaKnown RBP2.39□□□□□ -2.03
VPS50-216ENST00000484954 CFAP58Q5T655 872 aa2.39□□□□□ -2.03
VPS50-216ENST00000484954 MFN1Q8IWA4 741 aa2.39□□□□□ -2.03
VPS50-216ENST00000484954 ZBED8Q8IZ13 594 aa2.39□□□□□ -2.03
VPS50-216ENST00000484954 TEX26Q8N6G2 289 aa2.39□□□□□ -2.03
VPS50-216ENST00000484954 Q8N7P7 452 aa2.39□□□□□ -2.03
VPS50-216ENST00000484954 ITLN1Q8WWA0 313 aa2.39□□□□□ -2.03
VPS50-216ENST00000484954 CNOT6LQ96LI5 555 aaKnown RBP2.39□□□□□ -2.03
VPS50-216ENST00000484954 LURAP1Q96LR2 239 aa2.39□□□□□ -2.03
VPS50-216ENST00000484954 IL12RB2Q99665 862 aa2.39□□□□□ -2.03
VPS50-216ENST00000484954 SLF1Q9BQI6 1058 aa2.39□□□□□ -2.03
VPS50-216ENST00000484954 LRRCC1Q9C099 1032 aa2.39□□□□□ -2.03
VPS50-216ENST00000484954 FN3KQ9H479 309 aa2.39□□□□□ -2.03
VPS50-216ENST00000484954 C3orf14Q9HBI5 128 aa2.39□□□□□ -2.03
VPS50-216ENST00000484954 IARS2Q9NSE4 1012 aaKnown RBP2.39□□□□□ -2.03
VPS50-216ENST00000484954 NSG2Q9Y328 171 aa2.39□□□□□ -2.03
VPS50-216ENST00000484954 KIF25-AS1Q9Y6Z4 181 aa2.39□□□□□ -2.03
VPS50-216ENST00000484954 SALL1Q9NSC2 1324 aa2.39□□□□□ -2.03
VPS50-216ENST00000484954 A0A1W2PPW3 197 aa2.38□□□□□ -2.03
VPS50-216ENST00000484954 LMO7DNF2Z398 122 aa2.38□□□□□ -2.03
VPS50-216ENST00000484954 K7ENM7 598 aa2.38□□□□□ -2.03
VPS50-216ENST00000484954 UBE2CO00762 179 aa2.38□□□□□ -2.03
VPS50-216ENST00000484954 TXNL1O43396 289 aa2.38□□□□□ -2.03
VPS50-216ENST00000484954 SH3BGRLO75368 114 aa2.38□□□□□ -2.03
VPS50-216ENST00000484954 MT-ND2P03891 347 aa2.38□□□□□ -2.03
VPS50-216ENST00000484954 FYNP06241 537 aa2.38□□□□□ -2.03
VPS50-216ENST00000484954 FAM200BP0CF97 657 aa2.38□□□□□ -2.03
VPS50-216ENST00000484954 EPORP19235 508 aa2.38□□□□□ -2.03
VPS50-216ENST00000484954 HSPA4P34932 840 aa2.38□□□□□ -2.03
VPS50-216ENST00000484954 RGS7P49802 495 aa2.38□□□□□ -2.03
VPS50-216ENST00000484954 GMPSP49915 693 aaPredicted RBP2.38□□□□□ -2.03
VPS50-216ENST00000484954 POU5F1Q01860 360 aaKnown RBP2.38□□□□□ -2.03
VPS50-216ENST00000484954 CYLC2Q14093 348 aaPredicted RBP2.38□□□□□ -2.03
VPS50-216ENST00000484954 TMEM44Q2T9K0 475 aa2.38□□□□□ -2.03
VPS50-216ENST00000484954 PRR30Q53SZ7 412 aaPredicted RBP2.38□□□□□ -2.03
VPS50-216ENST00000484954 ZNF542PQ5EBM4 170 aa2.38□□□□□ -2.03
VPS50-216ENST00000484954 CST9LP1Q5W188 147 aa2.38□□□□□ -2.03
VPS50-216ENST00000484954 FUT10Q6P4F1 479 aa2.38□□□□□ -2.03
VPS50-216ENST00000484954 ENPP7Q6UWV6 458 aa2.38□□□□□ -2.03
VPS50-216ENST00000484954 BTNL8Q6UX41 500 aa2.38□□□□□ -2.03
VPS50-216ENST00000484954 CCBE1Q6UXH8 406 aaPredicted RBP2.38□□□□□ -2.03
VPS50-216ENST00000484954 PPP1R21Q6ZMI0 780 aa2.38□□□□□ -2.03
VPS50-216ENST00000484954 Q6ZVQ6 151 aa2.38□□□□□ -2.03
VPS50-216ENST00000484954 COX8CQ7Z4L0 72 aa2.38□□□□□ -2.03
VPS50-216ENST00000484954 NRARPQ7Z6K4 114 aa2.38□□□□□ -2.03
VPS50-216ENST00000484954 PRUNE1Q86TP1 453 aa2.38□□□□□ -2.03
VPS50-216ENST00000484954 AMIGO1Q86WK6 493 aa2.38□□□□□ -2.03
VPS50-216ENST00000484954 CAMKVQ8NCB2 501 aa2.38□□□□□ -2.03
VPS50-216ENST00000484954 MRAPQ8TCY5 172 aa2.38□□□□□ -2.03
VPS50-216ENST00000484954 AGAP11Q8TF27 550 aa2.38□□□□□ -2.03
VPS50-216ENST00000484954 RFT1Q96AA3 541 aa2.38□□□□□ -2.03
VPS50-216ENST00000484954 CFAP57Q96MR6 1250 aa2.38□□□□□ -2.03
VPS50-216ENST00000484954 HNRNPABQ99729 332 aaKnown RBP2.38□□□□□ -2.03
VPS50-216ENST00000484954 ALKBH7Q9BT30 221 aaPredicted RBP2.38□□□□□ -2.03
VPS50-216ENST00000484954 MOB1AQ9H8S9 216 aa2.38□□□□□ -2.03
VPS50-216ENST00000484954 WDR41Q9HAD4 459 aa2.38□□□□□ -2.03
VPS50-216ENST00000484954 CLEC5AQ9NY25 188 aa2.38□□□□□ -2.03
VPS50-216ENST00000484954 BCCIPQ9P287 314 aaKnown RBP eCLIP2.38□□□□□ -2.03
VPS50-216ENST00000484954 A0A1B0GTH9 108 aa2.37□□□□□ -2.03
VPS50-216ENST00000484954 NKX6-3A6NJ46 265 aa2.37□□□□□ -2.03
VPS50-216ENST00000484954 E9PAM4 449 aa2.37□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms