RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 HIST1H2AHQ96KK5 128 aa11.51□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 HIST1H2AJQ99878 128 aa11.51□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 H2AFJQ9BTM1 129 aa11.51□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 UNKQ9C0B0 810 aaKnown RBP11.51□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 SLC6A16Q9GZN6 736 aa11.51□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 DDX47Q9H0S4 455 aaKnown RBP11.51□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 KCNK13Q9HB14 408 aa11.51□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 ARL15Q9NXU5 204 aa11.51□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 ZFP69BQ9UJL9 534 aa11.51□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 IGKV3D-11A0A0A0MRZ8 115 aa11.5□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 ZNF860A6NHJ4 632 aa11.5□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 OR1F1O43749 312 aa11.5□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 B3GALT4O96024 378 aa11.5□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 TNFRSF8P28908 595 aa11.5□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 ELK3P41970 407 aa11.5□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 SLC26A5P58743 744 aa11.5□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 MORF4L2Q15014 288 aa11.5□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 PPP1R7Q15435 360 aa11.5□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 OR1C1Q15619 314 aa11.5□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 ZNF630Q2M218 657 aaPredicted RBP11.5□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 DEFB134Q4QY38 66 aa11.5□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 KRTCAP3Q53RY4 240 aa11.5□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 MFSD4BQ5TF39 518 aa11.5□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 ZNF468Q5VIY5 522 aaPredicted RBP11.5□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 NIPAL1Q6NVV3 410 aa11.5□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 QSOX2Q6ZRP7 698 aa11.5□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 ZNF808Q8N4W9 903 aaPredicted RBP11.5□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 CREB3L4Q8TEY5 395 aa11.5□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 SLC5A11Q8WWX8 675 aa11.5□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 ATL1Q8WXF7 558 aa11.5□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 LRRC39Q96DD0 335 aa11.5□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 GPR137Q96N19 417 aa11.5□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 PWWP2AQ96N64 755 aa11.5□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 FRMD6Q96NE9 622 aa11.5□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 LPAR4Q99677 370 aa11.5□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 UTP23Q9BRU9 249 aaKnown RBP11.5□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 HES7Q9BYE0 225 aa11.5□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 MOCS1Q9NZB8 636 aa11.5□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 CLDN16Q9Y5I7 305 aa11.5□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 DNAJC13O75165 2243 aa11.5□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 GOLGA6L10A0A0M3HER8 536 aa11.49□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 TCRBV16S1A1N1A0A5B0 115 aa11.49□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 C4orf51C9J302 202 aa11.49□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 PRSS44E7EML9 344 aa11.49□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 CCL21O00585 134 aa11.49□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 TTI1O43156 1089 aa11.49□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 NDUFS4O43181 175 aa11.49□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 SLC19A2O60779 497 aa11.49□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 CDC123O75794 336 aaPredicted RBP11.49□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 ZNF37AP17032 561 aaPredicted RBP11.49□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 AGAP20933 346 aa11.49□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 TRHRP34981 398 aaPredicted RBP11.49□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 BTG2P78543 158 aa11.49□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 ADORA2A-AS1P86434 159 aa11.49□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 CDKL1Q00532 357 aa11.49□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 REEP5Q00765 189 aa11.49□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 PDAP1Q13442 181 aaKnown RBP11.49□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 BBS9Q3SYG4 887 aa11.49□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 FAM45BPQ6NSW5 357 aa11.49□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 NXPE4Q6UWF7 544 aa11.49□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 RPTNQ6XPR3 784 aa11.49□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 BNC2Q6ZN30 1099 aaPredicted RBP11.49□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 MRGPRGQ86SM5 289 aa11.49□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 KLHDC8AQ8IYD2 350 aa11.49□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 FAM45AQ8TCE6 357 aa11.49□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 ALKBH8Q96BT7 664 aaKnown RBP11.49□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 TRIM54Q9BYV2 358 aa11.49□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 KLHL31Q9H511 634 aa11.49□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 PELI2Q9HAT8 420 aa11.49□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 ASIC3Q9UHC3 531 aa11.49□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 PSAT1Q9Y617 370 aa11.49□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 ZNF407Q9C0G0 2248 aa11.49□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 POLQO75417 2590 aa11.49□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 TRGV8A0A0C4DH27 118 aa11.48□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 ARHGAP10A1A4S6 786 aa11.48□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 GABRR3A8MPY1 467 aa11.48□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 E7ESA3 106 aa11.48□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 PRMT3O60678 531 aa11.48□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 WISP3O95389 354 aaPredicted RBP11.48□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 TBX6O95947 436 aaPredicted RBP11.48□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 SP1P08047 785 aa11.48□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 SERPINA6P08185 405 aa11.48□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 ZNF888P0CJ79 500 aaPredicted RBP11.48□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 ST13P50502 369 aaKnown RBP11.48□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 GPR143P51810 404 aa11.48□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 OR4D2P58180 307 aa11.48□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 MLF1P58340 268 aa11.48□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 OLR1P78380 273 aa11.48□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 ACTN3Q08043 901 aaPredicted RBP11.48□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 CSHL1Q14406 222 aa11.48□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 C3AR1Q16581 482 aa11.48□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 RNFT1Q5M7Z0 435 aa11.48□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 SLC25A25Q6KCM7 469 aa11.48□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 MTFR2Q6P444 385 aa11.48□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 XKRXQ6PP77 449 aa11.48□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 SYDE1Q6ZW31 735 aaPredicted RBP11.48□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 ABHD13Q7L211 337 aa11.48□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 THOC6Q86W42 341 aaKnown RBP11.48□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 ZC3HC1Q86WB0 502 aaKnown RBP11.48□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 RPS19BP1Q86WX3 136 aaKnown RBP11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms