RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 HS3ST4Q9Y661 456 aa4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 TAF6LQ9Y6J9 622 aa4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 DDX60LQ5H9U9 1706 aaKnown RBP4.63□□□□□ -1.67
CCDC88A-209ENST00000456975 SSC5DA1L4H1 1573 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 NEDD8-MDP1E9PL57 170 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 PSMD3O43242 534 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 HSPA12AO43301 675 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 TSPAN2O60636 221 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 ENTPD3O75355 529 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 SLC43A1O75387 559 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 HAUS5O94927 633 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 TNNC2P02585 160 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 SLC2A1P11166 492 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 INSRRP14616 1297 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 ECHS1P30084 290 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 CORO1AP31146 461 aaKnown RBP4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 TGFBR2P37173 567 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 RPL35P42766 123 aaKnown RBP4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 NOMO3P69849 1222 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 TOP3AQ13472 1001 aaPredicted RBP4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 DRAP1Q14919 205 aaPredicted RBP4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 KLHL12Q53G59 568 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 SPATA46Q5T0L3 261 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 FKBP1CQ5VVH2 108 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 GPR107Q5VW38 600 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 RESP18Q5W5W9 173 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 PMF1Q6P1K2 205 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 METTL7BQ6UX53 244 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 CATSPERDQ86XM0 798 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 APOBEC3FQ8IUX4 373 aaKnown RBP4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 ULK2Q8IYT8 1036 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 ENDOVQ8N8Q3 282 aaKnown RBP4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 STEAP2Q8NFT2 490 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 OR5D18Q8NGL1 313 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 OR52J3Q8NH60 311 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 CYP2W1Q8TAV3 490 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 ACTL9Q8TC94 416 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 MAGEE2Q8TD90 523 aaPredicted RBP4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 WFIKKN2Q8TEU8 576 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 CKAP2Q8WWK9 683 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 CACNG8Q8WXS5 425 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 MAFIPQ8WZ33 124 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 GLG1Q92896 1179 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 TCEAL3Q969E4 200 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 MRGPRFQ96AM1 343 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 RASD2Q96D21 266 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 C14orf79Q96F83 325 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 PACRGQ96M98 296 aaPredicted RBP4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 MBOAT7Q96N66 472 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 FOPNLQ96NB1 174 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 SNX18Q96RF0 628 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 LGMNQ99538 433 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 APOL2Q9BQE5 337 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 MXRA8Q9BRK3 442 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 ZNF416Q9BWM5 594 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 MAGEB5Q9BZ81 275 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 ZMYND12Q9H0C1 365 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 GAL3ST2Q9H3Q3 398 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 NOL11Q9H8H0 719 aaKnown RBP4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 ANKZF1Q9H8Y5 726 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 USP29Q9HBJ7 922 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 SAYSD1Q9NPB0 183 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 CHST11Q9NPF2 352 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 SERHLQ9NQF3 203 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 TLR9Q9NR96 1032 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 ECHDC1Q9NTX5 307 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 MS4A12Q9NXJ0 267 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 KLHL28Q9NXS3 571 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 PDP1Q9P0J1 537 aaPredicted RBP4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 ARHGAP20Q9P2F6 1191 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 ZNF70Q9UC06 446 aaPredicted RBP4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 NAGKQ9UJ70 344 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 ADAM28Q9UKQ2 775 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 AMFRQ9UKV5 643 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 NDUFAF1Q9Y375 327 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 RNF215Q9Y6U7 377 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 A0A0J9YYE9 177 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 TRIM49BA6NDI0 452 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 EVPLLA8MZ36 301 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 HRKO00198 91 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 STX16O14662 325 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 SGCEO43556 437 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 SCN2BO60939 215 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 TRMUO75648 421 aaKnown RBP4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 PSMD10O75832 226 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 SULT1C4O75897 302 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 FAM155BO75949 473 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 NOL4O94818 638 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 CALCAP01258 141 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 TRBC1P01850 177 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 ERBB2P04626 1255 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 SERPINA5P05154 406 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 CD1AP06126 327 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 ITGA5P08648 1049 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 FBP1P09467 338 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 ZGLP1P0C6A0 271 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 THRBP10828 461 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 LAMP2P13473 410 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 CD1EP15812 388 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 ITIH1P19827 911 aa4.62□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms