RNA–Protein interactions for RNA: ENST00000413601.3

LIMS4-201, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene LIMS4, Length 1,215 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-201ENST00000413601 PEX11GQ96HA9 241 aa14□□□□□ -0.17
LIMS4-201ENST00000413601 THOC3Q96J01 351 aaKnown RBP14□□□□□ -0.17
LIMS4-201ENST00000413601 PAFAH2Q99487 392 aa14□□□□□ -0.17
LIMS4-201ENST00000413601 SLC6A16Q9GZN6 736 aa14□□□□□ -0.17
LIMS4-201ENST00000413601 ZBTB20Q9HC78 741 aaPredicted RBP14□□□□□ -0.17
LIMS4-201ENST00000413601 LUZP4Q9P127 313 aa14□□□□□ -0.17
LIMS4-201ENST00000413601 IKBKGQ9Y6K9 419 aa14□□□□□ -0.17
LIMS4-201ENST00000413601 A0A087WUV0 522 aaPredicted RBP13.99□□□□□ -0.17
LIMS4-201ENST00000413601 LOC102723996A0A087X1L8 192 aa13.99□□□□□ -0.17
LIMS4-201ENST00000413601 IGHV1-45A0A0A0MS14 117 aa13.99□□□□□ -0.17
LIMS4-201ENST00000413601 NSG1A0A0A6YYJ2 146 aa13.99□□□□□ -0.17
LIMS4-201ENST00000413601 TTLL8A6PVC2 850 aa13.99□□□□□ -0.17
LIMS4-201ENST00000413601 KLHL41O60662 606 aa13.99□□□□□ -0.17
LIMS4-201ENST00000413601 KLHL2O95198 593 aa13.99□□□□□ -0.17
LIMS4-201ENST00000413601 ZIC2O95409 532 aaPredicted RBP13.99□□□□□ -0.17
LIMS4-201ENST00000413601 SERPINA6P08185 405 aa13.99□□□□□ -0.17
LIMS4-201ENST00000413601 C8orf89P0DMQ9 161 aa13.99□□□□□ -0.17
LIMS4-201ENST00000413601 MTHFD2P13995 350 aa13.99□□□□□ -0.17
LIMS4-201ENST00000413601 EPORP19235 508 aa13.99□□□□□ -0.17
LIMS4-201ENST00000413601 MSH2P43246 934 aa13.99□□□□□ -0.17
LIMS4-201ENST00000413601 DOC2AQ14183 400 aa13.99□□□□□ -0.17
LIMS4-201ENST00000413601 XKR6Q5GH73 641 aa13.99□□□□□ -0.17
LIMS4-201ENST00000413601 TOR1AIP1Q5JTV8 583 aa13.99□□□□□ -0.17
LIMS4-201ENST00000413601 IRAK1BP1Q5VVH5 260 aa13.99□□□□□ -0.17
LIMS4-201ENST00000413601 TMEM205Q6UW68 189 aa13.99□□□□□ -0.17
LIMS4-201ENST00000413601 LANCL3Q6ZV70 420 aa13.99□□□□□ -0.17
LIMS4-201ENST00000413601 KRT78Q8N1N4 520 aa13.99□□□□□ -0.17
LIMS4-201ENST00000413601 AMER2Q8N7J2 671 aa13.99□□□□□ -0.17
LIMS4-201ENST00000413601 METTL21AQ8WXB1 218 aa13.99□□□□□ -0.17
LIMS4-201ENST00000413601 CCT6BQ92526 530 aa13.99□□□□□ -0.17
LIMS4-201ENST00000413601 RBCK1Q9BYM8 510 aa13.99□□□□□ -0.17
LIMS4-201ENST00000413601 AICDAQ9GZX7 198 aa13.99□□□□□ -0.17
LIMS4-201ENST00000413601 LHPPQ9H008 270 aa13.99□□□□□ -0.17
LIMS4-201ENST00000413601 VPS11Q9H270 941 aa13.99□□□□□ -0.17
LIMS4-201ENST00000413601 EHD1Q9H4M9 534 aa13.99□□□□□ -0.17
LIMS4-201ENST00000413601 HELZ2Q9BYK8 2649 aaKnown RBP13.99□□□□□ -0.17
LIMS4-201ENST00000413601 A0A1W2PQ72 361 aa13.98□□□□□ -0.17
LIMS4-201ENST00000413601 URADA6NGE7 173 aa13.98□□□□□ -0.17
LIMS4-201ENST00000413601 C4orf51C9J302 202 aa13.98□□□□□ -0.17
LIMS4-201ENST00000413601 PCDH17O14917 1159 aa13.98□□□□□ -0.17
LIMS4-201ENST00000413601 CHST10O43529 356 aa13.98□□□□□ -0.17
LIMS4-201ENST00000413601 CDC123O75794 336 aaPredicted RBP13.98□□□□□ -0.17
LIMS4-201ENST00000413601 FAM153BP0C7A2 387 aa13.98□□□□□ -0.17
LIMS4-201ENST00000413601 SMIM10L1P0DMW3 83 aa13.98□□□□□ -0.17
LIMS4-201ENST00000413601 CD22P20273 847 aa13.98□□□□□ -0.17
LIMS4-201ENST00000413601 SERPINB9P50453 376 aa13.98□□□□□ -0.17
LIMS4-201ENST00000413601 SKP1P63208 163 aa13.98□□□□□ -0.17
LIMS4-201ENST00000413601 CHIT1Q13231 466 aa13.98□□□□□ -0.17
LIMS4-201ENST00000413601 ACAP2Q15057 778 aa13.98□□□□□ -0.17
LIMS4-201ENST00000413601 PCOLCEQ15113 449 aa13.98□□□□□ -0.17
LIMS4-201ENST00000413601 FAM153CQ494X1 144 aa13.98□□□□□ -0.17
LIMS4-201ENST00000413601 AGAP7PQ5VUJ5 663 aa13.98□□□□□ -0.17
LIMS4-201ENST00000413601 SLC6A19Q695T7 634 aa13.98□□□□□ -0.17
LIMS4-201ENST00000413601 ADNP2Q6IQ32 1131 aa13.98□□□□□ -0.17
LIMS4-201ENST00000413601 IGFL3Q6UXB1 125 aa13.98□□□□□ -0.17
LIMS4-201ENST00000413601 LRRC70Q7Z2Q7 622 aa13.98□□□□□ -0.17
LIMS4-201ENST00000413601 KBTBD2Q8IY47 623 aa13.98□□□□□ -0.17
LIMS4-201ENST00000413601 PLD6Q8N2A8 252 aaKnown RBP13.98□□□□□ -0.17
LIMS4-201ENST00000413601 TTLQ8NG68 377 aa13.98□□□□□ -0.17
LIMS4-201ENST00000413601 RHEBL1Q8TAI7 183 aa13.98□□□□□ -0.17
LIMS4-201ENST00000413601 UBTD2Q8WUN7 234 aa13.98□□□□□ -0.17
LIMS4-201ENST00000413601 DCAKDQ8WVC6 231 aa13.98□□□□□ -0.17
LIMS4-201ENST00000413601 WDR34Q96EX3 536 aa13.98□□□□□ -0.17
LIMS4-201ENST00000413601 PTCD3Q96EY7 689 aaKnown RBP13.98□□□□□ -0.17
LIMS4-201ENST00000413601 SMIM10Q96HG1 83 aa13.98□□□□□ -0.17
LIMS4-201ENST00000413601 AGAP4Q96P64 663 aa13.98□□□□□ -0.17
LIMS4-201ENST00000413601 GPR78Q96P69 363 aa13.98□□□□□ -0.17
LIMS4-201ENST00000413601 PITHD1Q9GZP4 211 aaPredicted RBP13.98□□□□□ -0.17
LIMS4-201ENST00000413601 ZNF700Q9H0M5 742 aa13.98□□□□□ -0.17
LIMS4-201ENST00000413601 NT5DC2Q9H857 520 aa13.98□□□□□ -0.17
LIMS4-201ENST00000413601 LANCL2Q9NS86 450 aa13.98□□□□□ -0.17
LIMS4-201ENST00000413601 COPG2Q9UBF2 871 aa13.98□□□□□ -0.17
LIMS4-201ENST00000413601 OPTCQ9UBM4 332 aa13.98□□□□□ -0.17
LIMS4-201ENST00000413601 ZNF490Q9ULM2 529 aaPredicted RBP13.98□□□□□ -0.17
LIMS4-201ENST00000413601 PLAAQ9Y263 795 aa13.98□□□□□ -0.17
LIMS4-201ENST00000413601 SHANK1Q9Y566 2161 aa13.98□□□□□ -0.17
LIMS4-201ENST00000413601 IGHV3-20A0A0C4DH32 117 aa13.97□□□□□ -0.17
LIMS4-201ENST00000413601 ANKDD1BA6NHY2 528 aa13.97□□□□□ -0.17
LIMS4-201ENST00000413601 SYCE1LA8MT33 242 aa13.97□□□□□ -0.17
LIMS4-201ENST00000413601 SORBS2O94875 1100 aaKnown RBP13.97□□□□□ -0.17
LIMS4-201ENST00000413601 CELA2AP08217 269 aa13.97□□□□□ -0.17
LIMS4-201ENST00000413601 PRR35P0CG20 571 aa13.97□□□□□ -0.17
LIMS4-201ENST00000413601 IL10P22301 178 aa13.97□□□□□ -0.17
LIMS4-201ENST00000413601 HNRNPH1P31943 449 aaKnown RBP13.97□□□□□ -0.17
LIMS4-201ENST00000413601 MAGEA12P43365 314 aa13.97□□□□□ -0.17
LIMS4-201ENST00000413601 STXBP1P61764 594 aaKnown RBP13.97□□□□□ -0.17
LIMS4-201ENST00000413601 FOXK1P85037 733 aa13.97□□□□□ -0.17
LIMS4-201ENST00000413601 IRF8Q02556 426 aa13.97□□□□□ -0.17
LIMS4-201ENST00000413601 KCNC4Q03721 635 aa13.97□□□□□ -0.17
LIMS4-201ENST00000413601 PFKFB4Q16877 469 aa13.97□□□□□ -0.17
LIMS4-201ENST00000413601 PLEKHN1Q494U1 663 aaPredicted RBP13.97□□□□□ -0.17
LIMS4-201ENST00000413601 NIPAL1Q6NVV3 410 aa13.97□□□□□ -0.17
LIMS4-201ENST00000413601 KLC3Q6P597 504 aa13.97□□□□□ -0.17
LIMS4-201ENST00000413601 TAOK1Q7L7X3 1001 aa13.97□□□□□ -0.17
LIMS4-201ENST00000413601 VN1R5Q7Z5H4 357 aa13.97□□□□□ -0.17
LIMS4-201ENST00000413601 CPEB2Q7Z5Q1 589 aaKnown RBP13.97□□□□□ -0.17
LIMS4-201ENST00000413601 ZADH2Q8N4Q0 377 aa13.97□□□□□ -0.17
LIMS4-201ENST00000413601 Q8NA96 180 aa13.97□□□□□ -0.17
LIMS4-201ENST00000413601 ISL2Q96A47 359 aa13.97□□□□□ -0.17
LIMS4-201ENST00000413601 PNPLA2Q96AD5 504 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms