RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 LUMP51884 338 aaPredicted RBP9.94□□□□□ -0.82
LIMCH1-203ENST00000396595 INCA1Q0VD86 236 aa9.94□□□□□ -0.82
LIMCH1-203ENST00000396595 ARFRP1Q13795 201 aa9.94□□□□□ -0.82
LIMCH1-203ENST00000396595 ATP6AP1Q15904 470 aa9.94□□□□□ -0.82
LIMCH1-203ENST00000396595 CHRDL2Q6WN34 429 aa9.94□□□□□ -0.82
LIMCH1-203ENST00000396595 SYVN1Q86TM6 617 aa9.94□□□□□ -0.82
LIMCH1-203ENST00000396595 NUS1Q96E22 293 aa9.94□□□□□ -0.82
LIMCH1-203ENST00000396595 ANKRD66B4E2M5 251 aa9.94□□□□□ -0.82
LIMCH1-203ENST00000396595 J3KR12 359 aa9.94□□□□□ -0.82
LIMCH1-203ENST00000396595 AURKAO14965 403 aa9.94□□□□□ -0.82
LIMCH1-203ENST00000396595 PNPP00491 289 aa9.94□□□□□ -0.82
LIMCH1-203ENST00000396595 GSTT2P0CG29 244 aa9.94□□□□□ -0.82
LIMCH1-203ENST00000396595 NDUFS1P28331 727 aa9.94□□□□□ -0.82
LIMCH1-203ENST00000396595 TAS2R43P59537 309 aa9.94□□□□□ -0.82
LIMCH1-203ENST00000396595 LRRC32Q14392 662 aa9.94□□□□□ -0.82
LIMCH1-203ENST00000396595 TGFBIQ15582 683 aa9.94□□□□□ -0.82
LIMCH1-203ENST00000396595 BORAQ6PGQ7 559 aa9.94□□□□□ -0.82
LIMCH1-203ENST00000396595 NCEH1Q6PIU2 408 aa9.94□□□□□ -0.82
LIMCH1-203ENST00000396595 BRAT1Q6PJG6 821 aa9.94□□□□□ -0.82
LIMCH1-203ENST00000396595 ZNF627Q7L945 461 aa9.94□□□□□ -0.82
LIMCH1-203ENST00000396595 THOC6Q86W42 341 aaKnown RBP9.94□□□□□ -0.82
LIMCH1-203ENST00000396595 ACBD4Q8NC06 268 aa9.94□□□□□ -0.82
LIMCH1-203ENST00000396595 TERB2Q8NHR7 220 aa9.94□□□□□ -0.82
LIMCH1-203ENST00000396595 PMM1Q92871 262 aa9.94□□□□□ -0.82
LIMCH1-203ENST00000396595 SUSD3Q96L08 255 aa9.94□□□□□ -0.82
LIMCH1-203ENST00000396595 PHOX2BQ99453 314 aa9.94□□□□□ -0.82
LIMCH1-203ENST00000396595 CCM2Q9BSQ5 444 aa9.94□□□□□ -0.82
LIMCH1-203ENST00000396595 HS3ST4Q9Y661 456 aa9.94□□□□□ -0.82
LIMCH1-203ENST00000396595 C3P01024 1663 aa9.94□□□□□ -0.82
LIMCH1-203ENST00000396595 KLK1P06870 262 aa9.94□□□□□ -0.82
LIMCH1-203ENST00000396595 PROZP22891 400 aa9.94□□□□□ -0.82
LIMCH1-203ENST00000396595 FNTBP49356 437 aa9.94□□□□□ -0.82
LIMCH1-203ENST00000396595 SERINC3Q13530 473 aa9.94□□□□□ -0.82
LIMCH1-203ENST00000396595 DNASE1L3Q13609 305 aa9.94□□□□□ -0.82
LIMCH1-203ENST00000396595 COTL1Q14019 142 aa9.94□□□□□ -0.82
LIMCH1-203ENST00000396595 SLC39A4Q6P5W5 647 aa9.94□□□□□ -0.82
LIMCH1-203ENST00000396595 VITQ6UXI7 678 aa9.94□□□□□ -0.82
LIMCH1-203ENST00000396595 CEACAM20Q6UY09 585 aa9.94□□□□□ -0.82
LIMCH1-203ENST00000396595 TMEM145Q8NBT3 493 aa9.94□□□□□ -0.82
LIMCH1-203ENST00000396595 HERVK_113Q902F9 699 aa9.94□□□□□ -0.82
LIMCH1-203ENST00000396595 MGAT4BQ9UQ53 548 aa9.94□□□□□ -0.82
LIMCH1-203ENST00000396595 A0A1B0GVC2 190 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 ALPIP09923 528 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 PABPC4LP0CB38 370 aaKnown RBP9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 ZNF20P17024 532 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 ZNF182P17025 639 aaPredicted RBP9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 OR12D2P58182 307 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 EMC10Q5UCC4 262 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 PRSS55Q6UWB4 352 aaPredicted RBP9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 IGDCC3Q8IVU1 814 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 GOLM1Q8NBJ4 401 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 OR2AP1Q8NGE2 309 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 SMPDL3AQ92484 453 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 DDX1Q92499 740 aaKnown RBP9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 CREB3L1Q96BA8 519 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 BARD1Q99728 777 aaKnown RBP9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 TIMM8BQ9Y5J9 83 aaPredicted RBP9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 A0A0G2JN53 185 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 TMEM150CB9EJG8 249 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 SEPT4O43236 478 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 TLX2O43763 284 aaPredicted RBP9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 DFNA5O60443 496 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 TBX18O95935 607 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 HPRP00739 348 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 EPOP01588 193 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 C8AP07357 584 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 F7P08709 466 aaPredicted RBP9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 NKX6-1P78426 367 aaPredicted RBP9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 C2orf76Q3KRA6 126 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 CYBRD1Q53TN4 286 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 TOR1AIP1Q5JTV8 583 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 SMYD5Q6GMV2 418 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 HFE2Q6ZVN8 426 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 OR8J3Q8NGG0 315 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 ARMC5Q96C12 935 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 TMED9Q9BVK6 235 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 DPEP2Q9H4A9 486 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 TMEM45AQ9NWC5 275 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 COQ3Q9NZJ6 369 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 HSBP1L1C9JCN9 74 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 E7ESA3 106 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 ATP1B2P14415 290 aaPredicted RBP9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 HTRA4P83105 476 aaPredicted RBP9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 AIMP2Q13155 320 aaKnown RBP9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 SP140Q13342 867 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 CDCA2Q69YH5 1023 aaPredicted RBP9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 MTFR2Q6P444 385 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 FAM122CQ6P4D5 195 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 NAPRTQ6XQN6 538 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 ZNF598Q86UK7 904 aaKnown RBP9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 SLC22A15Q8IZD6 547 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 TXNDC5Q8NBS9 432 aaKnown RBP9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 OR56A1Q8NGH5 318 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 KCNJ9Q92806 393 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 YIPF4Q9BSR8 244 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 CCM2LQ9NUG4 571 aaPredicted RBP9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 EXOSC1Q9Y3B2 195 aaKnown RBP9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 PSAT1Q9Y617 370 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 ATRNL1Q5VV63 1379 aa9.93□□□□□ -0.82
LIMCH1-203ENST00000396595 VILLO15195 856 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms