RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 INTS10Q9NVR2 710 aaKnown RBP12.96□□□□□ -0.33
VPS29-201ENST00000360579 DNAJB12Q9NXW2 375 aaKnown RBP12.96□□□□□ -0.33
VPS29-201ENST00000360579 GALPQ9UBC7 116 aa12.96□□□□□ -0.33
VPS29-201ENST00000360579 HRH3Q9Y5N1 445 aa12.96□□□□□ -0.33
VPS29-201ENST00000360579 FAM237BA0A1B0GVD1 139 aa12.95□□□□□ -0.34
VPS29-201ENST00000360579 SAGE2PA6NJ88 616 aa12.95□□□□□ -0.34
VPS29-201ENST00000360579 GOLGA8KD6RF30 607 aa12.95□□□□□ -0.34
VPS29-201ENST00000360579 GOLGA8TH3BQL2 631 aa12.95□□□□□ -0.34
VPS29-201ENST00000360579 PAMP19021 973 aa12.95□□□□□ -0.34
VPS29-201ENST00000360579 TBPL1P62380 186 aa12.95□□□□□ -0.34
VPS29-201ENST00000360579 PMPCAQ10713 525 aa12.95□□□□□ -0.34
VPS29-201ENST00000360579 ARMC3Q5W041 872 aa12.95□□□□□ -0.34
VPS29-201ENST00000360579 C4orf22Q6V702 233 aa12.95□□□□□ -0.34
VPS29-201ENST00000360579 QSOX2Q6ZRP7 698 aa12.95□□□□□ -0.34
VPS29-201ENST00000360579 SLC26A11Q86WA9 606 aa12.95□□□□□ -0.34
VPS29-201ENST00000360579 C17orf64Q86WR6 236 aa12.95□□□□□ -0.34
VPS29-201ENST00000360579 CCDC71Q8IV32 467 aaPredicted RBP12.95□□□□□ -0.34
VPS29-201ENST00000360579 CYP4X1Q8N118 509 aa12.95□□□□□ -0.34
VPS29-201ENST00000360579 CYP4Z2PQ8N1L4 340 aa12.95□□□□□ -0.34
VPS29-201ENST00000360579 PRELID2Q8N945 189 aa12.95□□□□□ -0.34
VPS29-201ENST00000360579 OR5M3Q8NGP4 307 aa12.95□□□□□ -0.34
VPS29-201ENST00000360579 NRGNQ92686 78 aa12.95□□□□□ -0.34
VPS29-201ENST00000360579 KCNJ9Q92806 393 aa12.95□□□□□ -0.34
VPS29-201ENST00000360579 MFSD3Q96ES6 412 aa12.95□□□□□ -0.34
VPS29-201ENST00000360579 SLC6A16Q9GZN6 736 aa12.95□□□□□ -0.34
VPS29-201ENST00000360579 LACRTQ9GZZ8 138 aa12.95□□□□□ -0.34
VPS29-201ENST00000360579 CCDC68Q9H2F9 335 aa12.95□□□□□ -0.34
VPS29-201ENST00000360579 PACSIN2Q9UNF0 486 aaPredicted RBP12.95□□□□□ -0.34
VPS29-201ENST00000360579 INTS1Q8N201 2190 aaKnown RBP12.95□□□□□ -0.34
VPS29-201ENST00000360579 ACANP16112 2415 aa12.94□□□□□ -0.34
VPS29-201ENST00000360579 ABCA4P78363 2273 aa12.94□□□□□ -0.34
VPS29-201ENST00000360579 ZNF860A6NHJ4 632 aa12.94□□□□□ -0.34
VPS29-201ENST00000360579 TMEM200CA6NKL6 621 aa12.94□□□□□ -0.34
VPS29-201ENST00000360579 ETS1P14921 441 aa12.94□□□□□ -0.34
VPS29-201ENST00000360579 CCND1P24385 295 aa12.94□□□□□ -0.34
VPS29-201ENST00000360579 COILP38432 576 aaPredicted RBP12.94□□□□□ -0.34
VPS29-201ENST00000360579 RFC3P40938 356 aa12.94□□□□□ -0.34
VPS29-201ENST00000360579 NUP107P57740 925 aa12.94□□□□□ -0.34
VPS29-201ENST00000360579 SEL1L2Q5TEA6 688 aa12.94□□□□□ -0.34
VPS29-201ENST00000360579 KIAA0930Q6ICG6 404 aaPredicted RBP12.94□□□□□ -0.34
VPS29-201ENST00000360579 UBE2R2Q712K3 238 aaPredicted RBP12.94□□□□□ -0.34
VPS29-201ENST00000360579 CILP2Q8IUL8 1156 aa12.94□□□□□ -0.34
VPS29-201ENST00000360579 AFAP1L2Q8N4X5 818 aa12.94□□□□□ -0.34
VPS29-201ENST00000360579 TMEM156Q8N614 296 aa12.94□□□□□ -0.34
VPS29-201ENST00000360579 MFSD9Q8NBP5 474 aa12.94□□□□□ -0.34
VPS29-201ENST00000360579 ARMC2Q8NEN0 867 aa12.94□□□□□ -0.34
VPS29-201ENST00000360579 OR5T3Q8NGG3 340 aa12.94□□□□□ -0.34
VPS29-201ENST00000360579 PTCHD1Q96NR3 888 aa12.94□□□□□ -0.34
VPS29-201ENST00000360579 POLDIP3Q9BY77 421 aaKnown RBP12.94□□□□□ -0.34
VPS29-201ENST00000360579 TSGA10Q9BZW7 698 aa12.94□□□□□ -0.34
VPS29-201ENST00000360579 CLK4Q9HAZ1 481 aaKnown RBP12.94□□□□□ -0.34
VPS29-201ENST00000360579 TIMMDC1Q9NPL8 285 aa12.94□□□□□ -0.34
VPS29-201ENST00000360579 ST6GALNAC2Q9UJ37 374 aa12.94□□□□□ -0.34
VPS29-201ENST00000360579 FBN3Q75N90 2809 aa12.94□□□□□ -0.34
VPS29-201ENST00000360579 A0A1B0GTL3 188 aa12.93□□□□□ -0.34
VPS29-201ENST00000360579 FEZF1A0PJY2 475 aa12.93□□□□□ -0.34
VPS29-201ENST00000360579 FIGNL2A6NMB9 653 aa12.93□□□□□ -0.34
VPS29-201ENST00000360579 ACOT7O00154 380 aa12.93□□□□□ -0.34
VPS29-201ENST00000360579 EIF3FO00303 357 aaPredicted RBP12.93□□□□□ -0.34
VPS29-201ENST00000360579 NDUFS4O43181 175 aa12.93□□□□□ -0.34
VPS29-201ENST00000360579 CHST10O43529 356 aa12.93□□□□□ -0.34
VPS29-201ENST00000360579 GALR3O60755 368 aaPredicted RBP12.93□□□□□ -0.34
VPS29-201ENST00000360579 CTAG2O75638 210 aa12.93□□□□□ -0.34
VPS29-201ENST00000360579 FTCDO95954 541 aa12.93□□□□□ -0.34
VPS29-201ENST00000360579 TUBB4AP04350 444 aa12.93□□□□□ -0.34
VPS29-201ENST00000360579 ALOX12P18054 663 aa12.93□□□□□ -0.34
VPS29-201ENST00000360579 DNASE1P24855 282 aa12.93□□□□□ -0.34
VPS29-201ENST00000360579 MGAT1P26572 445 aa12.93□□□□□ -0.34
VPS29-201ENST00000360579 RPL22P35268 128 aaKnown RBP12.93□□□□□ -0.34
VPS29-201ENST00000360579 PEX19P40855 299 aa12.93□□□□□ -0.34
VPS29-201ENST00000360579 CLCN2P51788 898 aa12.93□□□□□ -0.34
VPS29-201ENST00000360579 BASP1P80723 227 aaKnown RBP12.93□□□□□ -0.34
VPS29-201ENST00000360579 CDK16Q00536 496 aa12.93□□□□□ -0.34
VPS29-201ENST00000360579 PWP1Q13610 501 aa12.93□□□□□ -0.34
VPS29-201ENST00000360579 CUL1Q13616 776 aa12.93□□□□□ -0.34
VPS29-201ENST00000360579 EMC4Q5J8M3 183 aa12.93□□□□□ -0.34
VPS29-201ENST00000360579 LRRC8EQ6NSJ5 796 aa12.93□□□□□ -0.34
VPS29-201ENST00000360579 NEPROQ6NW34 567 aa12.93□□□□□ -0.34
VPS29-201ENST00000360579 CES3Q6UWW8 571 aa12.93□□□□□ -0.34
VPS29-201ENST00000360579 RGS9BPQ6ZS82 235 aa12.93□□□□□ -0.34
VPS29-201ENST00000360579 KIAA0408Q6ZU52 694 aa12.93□□□□□ -0.34
VPS29-201ENST00000360579 CENPUQ71F23 418 aa12.93□□□□□ -0.34
VPS29-201ENST00000360579 KIAA1328Q86T90 577 aa12.93□□□□□ -0.34
VPS29-201ENST00000360579 PRUNE1Q86TP1 453 aa12.93□□□□□ -0.34
VPS29-201ENST00000360579 TXLNBQ8N3L3 684 aa12.93□□□□□ -0.34
VPS29-201ENST00000360579 RPRMLQ8N4K4 120 aa12.93□□□□□ -0.34
VPS29-201ENST00000360579 TBC1D19Q8N5T2 526 aa12.93□□□□□ -0.34
VPS29-201ENST00000360579 OR52N2Q8NGI0 321 aa12.93□□□□□ -0.34
VPS29-201ENST00000360579 OR10Q1Q8NGQ4 319 aa12.93□□□□□ -0.34
VPS29-201ENST00000360579 CREB3L4Q8TEY5 395 aa12.93□□□□□ -0.34
VPS29-201ENST00000360579 C1orf54Q8WWF1 131 aa12.93□□□□□ -0.34
VPS29-201ENST00000360579 RMND5BQ96G75 393 aaPredicted RBP12.93□□□□□ -0.34
VPS29-201ENST00000360579 HES6Q96HZ4 224 aa12.93□□□□□ -0.34
VPS29-201ENST00000360579 CCDC138Q96M89 665 aa12.93□□□□□ -0.34
VPS29-201ENST00000360579 ALPK1Q96QP1 1244 aa12.93□□□□□ -0.34
VPS29-201ENST00000360579 KCNK17Q96T54 332 aa12.93□□□□□ -0.34
VPS29-201ENST00000360579 SYBUQ9NX95 663 aa12.93□□□□□ -0.34
VPS29-201ENST00000360579 SOX13Q9UN79 622 aa12.93□□□□□ -0.34
VPS29-201ENST00000360579 L3MBTL1Q9Y468 752 aa12.93□□□□□ -0.34
VPS29-201ENST00000360579 HCFC1P51610 2035 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms