RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 CDC16Q13042 620 aa17.34■□□□□ 0.37
CLN3-202ENST00000355477 NAB1Q13506 487 aa17.34■□□□□ 0.37
CLN3-202ENST00000355477 SLMAPQ14BN4 828 aa17.34■□□□□ 0.37
CLN3-202ENST00000355477 CDKL4Q5MAI5 379 aa17.34■□□□□ 0.37
CLN3-202ENST00000355477 PRAMEF9Q5VWM5 478 aa17.34■□□□□ 0.37
CLN3-202ENST00000355477 SULT1C3Q6IMI6 304 aa17.34■□□□□ 0.37
CLN3-202ENST00000355477 CLEC18BQ6UXF7 455 aa17.34■□□□□ 0.37
CLN3-202ENST00000355477 RAPH1Q70E73 1250 aa17.34■□□□□ 0.37
CLN3-202ENST00000355477 CPEB2Q7Z5Q1 589 aaKnown RBP17.34■□□□□ 0.37
CLN3-202ENST00000355477 ISCA2Q86U28 154 aa17.34■□□□□ 0.37
CLN3-202ENST00000355477 ZGRF1Q86YA3 2104 aa17.34■□□□□ 0.37
CLN3-202ENST00000355477 IQCKQ8N0W5 287 aa17.34■□□□□ 0.37
CLN3-202ENST00000355477 TCAIMQ8N3R3 496 aa17.34■□□□□ 0.37
CLN3-202ENST00000355477 SIRT6Q8N6T7 355 aa17.34■□□□□ 0.37
CLN3-202ENST00000355477 CLEC18CQ8NCF0 446 aa17.34■□□□□ 0.37
CLN3-202ENST00000355477 TRPV3Q8NET8 790 aa17.34■□□□□ 0.37
CLN3-202ENST00000355477 DNAJB14Q8TBM8 379 aa17.34■□□□□ 0.37
CLN3-202ENST00000355477 PPP4R1Q8TF05 950 aa17.34■□□□□ 0.37
CLN3-202ENST00000355477 METTL21AQ8WXB1 218 aa17.34■□□□□ 0.37
CLN3-202ENST00000355477 LMF1Q96S06 567 aa17.34■□□□□ 0.37
CLN3-202ENST00000355477 WDR77Q9BQA1 342 aaPredicted RBP17.34■□□□□ 0.37
CLN3-202ENST00000355477 RIC8BQ9NVN3 520 aa17.34■□□□□ 0.37
CLN3-202ENST00000355477 ASF1BQ9NVP2 202 aa17.34■□□□□ 0.37
CLN3-202ENST00000355477 WWOXQ9NZC7 414 aa17.34■□□□□ 0.37
CLN3-202ENST00000355477 NINJ2Q9NZG7 142 aa17.34■□□□□ 0.37
CLN3-202ENST00000355477 CD274Q9NZQ7 290 aa17.34■□□□□ 0.37
CLN3-202ENST00000355477 PTGFRNQ9P2B2 879 aa17.34■□□□□ 0.37
CLN3-202ENST00000355477 MAP10Q9P2G4 905 aa17.34■□□□□ 0.37
CLN3-202ENST00000355477 PTBP2Q9UKA9 531 aaKnown RBP17.34■□□□□ 0.37
CLN3-202ENST00000355477 VPS4AQ9UN37 437 aa17.34■□□□□ 0.37
CLN3-202ENST00000355477 TCP11X1B4DZS4 312 aa17.33■□□□□ 0.36
CLN3-202ENST00000355477 CDC123O75794 336 aaPredicted RBP17.33■□□□□ 0.36
CLN3-202ENST00000355477 SEC24DO94855 1032 aaPredicted RBP17.33■□□□□ 0.36
CLN3-202ENST00000355477 SMIM10L1P0DMW3 83 aa17.33■□□□□ 0.36
CLN3-202ENST00000355477 ITGAMP11215 1152 aa17.33■□□□□ 0.36
CLN3-202ENST00000355477 CRABP2P29373 138 aa17.33■□□□□ 0.36
CLN3-202ENST00000355477 SOX11P35716 441 aa17.33■□□□□ 0.36
CLN3-202ENST00000355477 RHAGQ02094 409 aa17.33■□□□□ 0.36
CLN3-202ENST00000355477 MFAP5Q13361 173 aa17.33■□□□□ 0.36
CLN3-202ENST00000355477 UBAP2LQ14157 1087 aaKnown RBP17.33■□□□□ 0.36
CLN3-202ENST00000355477 ANKRD37Q7Z713 158 aa17.33■□□□□ 0.36
CLN3-202ENST00000355477 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP17.33■□□□□ 0.36
CLN3-202ENST00000355477 PDPRQ8NCN5 879 aa17.33■□□□□ 0.36
CLN3-202ENST00000355477 CATSPER1Q8NEC5 780 aa17.33■□□□□ 0.36
CLN3-202ENST00000355477 SMIM10Q96HG1 83 aa17.33■□□□□ 0.36
CLN3-202ENST00000355477 ALG9Q9H6U8 611 aa17.33■□□□□ 0.36
CLN3-202ENST00000355477 IGSF5Q9NSI5 407 aa17.33■□□□□ 0.36
CLN3-202ENST00000355477 DNAJC11Q9NVH1 559 aa17.33■□□□□ 0.36
CLN3-202ENST00000355477 RNF112Q9ULX5 631 aa17.33■□□□□ 0.36
CLN3-202ENST00000355477 NTNG1Q9Y2I2 539 aa17.33■□□□□ 0.36
CLN3-202ENST00000355477 ASB1Q9Y576 335 aa17.33■□□□□ 0.36
CLN3-202ENST00000355477 PCDHGA10Q9Y5H3 936 aa17.33■□□□□ 0.36
CLN3-202ENST00000355477 H2AFYO75367 372 aaKnown RBP17.32■□□□□ 0.36
CLN3-202ENST00000355477 STK16O75716 305 aa17.32■□□□□ 0.36
CLN3-202ENST00000355477 SERPINA6P08185 405 aa17.32■□□□□ 0.36
CLN3-202ENST00000355477 CYC1P08574 325 aa17.32■□□□□ 0.36
CLN3-202ENST00000355477 TFEBP19484 476 aa17.32■□□□□ 0.36
CLN3-202ENST00000355477 GLRBP48167 497 aa17.32■□□□□ 0.36
CLN3-202ENST00000355477 BMPR2Q13873 1038 aa17.32■□□□□ 0.36
CLN3-202ENST00000355477 SLBPQ14493 270 aaKnown RBP eCLIP17.32■□□□□ 0.36
CLN3-202ENST00000355477 TOR1AIP1Q5JTV8 583 aa17.32■□□□□ 0.36
CLN3-202ENST00000355477 MROH9Q5TGP6 573 aa17.32■□□□□ 0.36
CLN3-202ENST00000355477 B3GNTL1Q67FW5 361 aaPredicted RBP17.32■□□□□ 0.36
CLN3-202ENST00000355477 TMIGD1Q6UXZ0 262 aa17.32■□□□□ 0.36
CLN3-202ENST00000355477 RIPOR1Q6ZS17 1223 aa17.32■□□□□ 0.36
CLN3-202ENST00000355477 ABHD13Q7L211 337 aa17.32■□□□□ 0.36
CLN3-202ENST00000355477 PLPP5Q8NEB5 264 aa17.32■□□□□ 0.36
CLN3-202ENST00000355477 EXT2Q93063 718 aa17.32■□□□□ 0.36
CLN3-202ENST00000355477 NXNL1Q96CM4 212 aa17.32■□□□□ 0.36
CLN3-202ENST00000355477 OR1F2PQ96R84 312 aa17.32■□□□□ 0.36
CLN3-202ENST00000355477 TUBB6Q9BUF5 446 aa17.32■□□□□ 0.36
CLN3-202ENST00000355477 EPS8L2Q9H6S3 715 aa17.32■□□□□ 0.36
CLN3-202ENST00000355477 CNOT10Q9H9A5 744 aaKnown RBP17.32■□□□□ 0.36
CLN3-202ENST00000355477 NMRAL1Q9HBL8 299 aa17.32■□□□□ 0.36
CLN3-202ENST00000355477 PLA2G3Q9NZ20 509 aa17.32■□□□□ 0.36
CLN3-202ENST00000355477 GPRC5BQ9NZH0 403 aa17.32■□□□□ 0.36
CLN3-202ENST00000355477 TBX6O95947 436 aaPredicted RBP17.31■□□□□ 0.36
CLN3-202ENST00000355477 FHP07954 510 aa17.31■□□□□ 0.36
CLN3-202ENST00000355477 LTA4HP09960 611 aaKnown RBP17.31■□□□□ 0.36
CLN3-202ENST00000355477 EPORP19235 508 aa17.31■□□□□ 0.36
CLN3-202ENST00000355477 IL10P22301 178 aa17.31■□□□□ 0.36
CLN3-202ENST00000355477 ECHS1P30084 290 aa17.31■□□□□ 0.36
CLN3-202ENST00000355477 IRF9Q00978 393 aa17.31■□□□□ 0.36
CLN3-202ENST00000355477 MRPL49Q13405 166 aaKnown RBP17.31■□□□□ 0.36
CLN3-202ENST00000355477 NSDHLQ15738 373 aa17.31■□□□□ 0.36
CLN3-202ENST00000355477 ADNP2Q6IQ32 1131 aa17.31■□□□□ 0.36
CLN3-202ENST00000355477 VN1R5Q7Z5H4 357 aa17.31■□□□□ 0.36
CLN3-202ENST00000355477 TBC1D1Q86TI0 1168 aaPredicted RBP17.31■□□□□ 0.36
CLN3-202ENST00000355477 RELL1Q8IUW5 271 aa17.31■□□□□ 0.36
CLN3-202ENST00000355477 CENPLQ8N0S6 344 aaPredicted RBP17.31■□□□□ 0.36
CLN3-202ENST00000355477 SNX31Q8N9S9 440 aa17.31■□□□□ 0.36
CLN3-202ENST00000355477 MNS1Q8NEH6 495 aa17.31■□□□□ 0.36
CLN3-202ENST00000355477 STAG3L4Q8TBR4 150 aa17.31■□□□□ 0.36
CLN3-202ENST00000355477 IFT81Q8WYA0 676 aa17.31■□□□□ 0.36
CLN3-202ENST00000355477 TSLPQ969D9 159 aa17.31■□□□□ 0.36
CLN3-202ENST00000355477 TBC1D20Q96BZ9 403 aa17.31■□□□□ 0.36
CLN3-202ENST00000355477 CNDP1Q96KN2 507 aa17.31■□□□□ 0.36
CLN3-202ENST00000355477 ATOH8Q96SQ7 321 aa17.31■□□□□ 0.36
CLN3-202ENST00000355477 CAPS2Q9BXY5 557 aa17.31■□□□□ 0.36
CLN3-202ENST00000355477 CD244Q9BZW8 370 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms