RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 MACROD2A1Z1Q3 448 aa10.57□□□□□ -0.72
RTN3-204ENST00000354497 ASPDHA6ND91 283 aa10.57□□□□□ -0.72
RTN3-204ENST00000354497 OR51F1A6NGY5 319 aa10.57□□□□□ -0.72
RTN3-204ENST00000354497 HACD1B0YJ81 288 aa10.57□□□□□ -0.72
RTN3-204ENST00000354497 TARM1B6A8C7 271 aa10.57□□□□□ -0.72
RTN3-204ENST00000354497 I3L1I5 382 aaPredicted RBP10.57□□□□□ -0.72
RTN3-204ENST00000354497 CDC40O60508 579 aaKnown RBP eCLIP10.57□□□□□ -0.72
RTN3-204ENST00000354497 PABPC4LP0CB38 370 aaKnown RBP10.57□□□□□ -0.72
RTN3-204ENST00000354497 TPH1P17752 444 aa10.57□□□□□ -0.72
RTN3-204ENST00000354497 IGFBP2P18065 325 aa10.57□□□□□ -0.72
RTN3-204ENST00000354497 DNASE1P24855 282 aa10.57□□□□□ -0.72
RTN3-204ENST00000354497 MSX1P28360 303 aa10.57□□□□□ -0.72
RTN3-204ENST00000354497 CHRNB4P30926 498 aa10.57□□□□□ -0.72
RTN3-204ENST00000354497 MSH2P43246 934 aa10.57□□□□□ -0.72
RTN3-204ENST00000354497 SEC24CP53992 1094 aa10.57□□□□□ -0.72
RTN3-204ENST00000354497 TUBA1BP68363 451 aa10.57□□□□□ -0.72
RTN3-204ENST00000354497 HPCAP84074 193 aa10.57□□□□□ -0.72
RTN3-204ENST00000354497 MAT1AQ00266 395 aaKnown RBP10.57□□□□□ -0.72
RTN3-204ENST00000354497 BNIP1Q12981 228 aa10.57□□□□□ -0.72
RTN3-204ENST00000354497 GRB7Q14451 532 aa10.57□□□□□ -0.72
RTN3-204ENST00000354497 MAPKAPK3Q16644 382 aa10.57□□□□□ -0.72
RTN3-204ENST00000354497 NDUFA5Q16718 116 aa10.57□□□□□ -0.72
RTN3-204ENST00000354497 MEP1AQ16819 746 aa10.57□□□□□ -0.72
RTN3-204ENST00000354497 MINDY4Q4G0A6 757 aa10.57□□□□□ -0.72
RTN3-204ENST00000354497 FIGNQ5HY92 759 aa10.57□□□□□ -0.72
RTN3-204ENST00000354497 BLOC1S3Q6QNY0 202 aa10.57□□□□□ -0.72
RTN3-204ENST00000354497 LANCL3Q6ZV70 420 aa10.57□□□□□ -0.72
RTN3-204ENST00000354497 TUBA1AQ71U36 451 aa10.57□□□□□ -0.72
RTN3-204ENST00000354497 RNF44Q7L0R7 432 aa10.57□□□□□ -0.72
RTN3-204ENST00000354497 TRPM8Q7Z2W7 1104 aa10.57□□□□□ -0.72
RTN3-204ENST00000354497 NANOGNBQ7Z5D8 188 aa10.57□□□□□ -0.72
RTN3-204ENST00000354497 VRK3Q8IV63 474 aa10.57□□□□□ -0.72
RTN3-204ENST00000354497 SIAH3Q8IW03 269 aa10.57□□□□□ -0.72
RTN3-204ENST00000354497 ZC3H7AQ8IWR0 971 aaKnown RBP10.57□□□□□ -0.72
RTN3-204ENST00000354497 IFT20Q8IY31 132 aa10.57□□□□□ -0.72
RTN3-204ENST00000354497 RAB42Q8N4Z0 105 aa10.57□□□□□ -0.72
RTN3-204ENST00000354497 CSNK1A1LQ8N752 337 aa10.57□□□□□ -0.72
RTN3-204ENST00000354497 SKA2Q8WVK7 121 aaPredicted RBP10.57□□□□□ -0.72
RTN3-204ENST00000354497 NINJ1Q92982 152 aa10.57□□□□□ -0.72
RTN3-204ENST00000354497 CHMP6Q96FZ7 201 aa10.57□□□□□ -0.72
RTN3-204ENST00000354497 SCMH1Q96GD3 660 aa10.57□□□□□ -0.72
RTN3-204ENST00000354497 PBKQ96KB5 322 aa10.57□□□□□ -0.72
RTN3-204ENST00000354497 IMMP1LQ96LU5 166 aa10.57□□□□□ -0.72
RTN3-204ENST00000354497 PWWP2AQ96N64 755 aa10.57□□□□□ -0.72
RTN3-204ENST00000354497 FERMT1Q9BQL6 677 aa10.57□□□□□ -0.72
RTN3-204ENST00000354497 CENPKQ9BS16 269 aa10.57□□□□□ -0.72
RTN3-204ENST00000354497 MENTQ9BUN1 341 aa10.57□□□□□ -0.72
RTN3-204ENST00000354497 OSBPL10Q9BXB5 764 aa10.57□□□□□ -0.72
RTN3-204ENST00000354497 NLE1Q9NVX2 485 aaPredicted RBP10.57□□□□□ -0.72
RTN3-204ENST00000354497 GNPTGQ9UJJ9 305 aa10.57□□□□□ -0.72
RTN3-204ENST00000354497 RNF6Q9Y252 685 aa10.57□□□□□ -0.72
RTN3-204ENST00000354497 PLEKHA6Q9Y2H5 1048 aa10.57□□□□□ -0.72
RTN3-204ENST00000354497 ASB1Q9Y576 335 aa10.57□□□□□ -0.72
RTN3-204ENST00000354497 ZNF469Q96JG9 3925 aaPredicted RBP10.56□□□□□ -0.72
RTN3-204ENST00000354497 GABRR3A8MPY1 467 aa10.56□□□□□ -0.72
RTN3-204ENST00000354497 H0YGG7 62 aa10.56□□□□□ -0.72
RTN3-204ENST00000354497 OR1I1O60431 355 aa10.56□□□□□ -0.72
RTN3-204ENST00000354497 MFAP3LO75121 409 aa10.56□□□□□ -0.72
RTN3-204ENST00000354497 VPS26AO75436 327 aa10.56□□□□□ -0.72
RTN3-204ENST00000354497 SUN1O94901 812 aa10.56□□□□□ -0.72
RTN3-204ENST00000354497 SP1P08047 785 aa10.56□□□□□ -0.72
RTN3-204ENST00000354497 TMEM253P0C7T8 217 aa10.56□□□□□ -0.72
RTN3-204ENST00000354497 PTGS2P35354 604 aa10.56□□□□□ -0.72
RTN3-204ENST00000354497 BDKRB1P46663 353 aa10.56□□□□□ -0.72
RTN3-204ENST00000354497 DGKQP52824 942 aa10.56□□□□□ -0.72
RTN3-204ENST00000354497 ARF3P61204 181 aaPredicted RBP10.56□□□□□ -0.72
RTN3-204ENST00000354497 NCALDP61601 193 aa10.56□□□□□ -0.72
RTN3-204ENST00000354497 TSTA3Q13630 321 aaPredicted RBP10.56□□□□□ -0.72
RTN3-204ENST00000354497 POU6F1Q14863 301 aa10.56□□□□□ -0.72
RTN3-204ENST00000354497 HKDC1Q2TB90 917 aa10.56□□□□□ -0.72
RTN3-204ENST00000354497 LRRC38Q5VT99 294 aa10.56□□□□□ -0.72
RTN3-204ENST00000354497 TMEM211Q6ICI0 200 aa10.56□□□□□ -0.72
RTN3-204ENST00000354497 SLC25A25Q6KCM7 469 aa10.56□□□□□ -0.72
RTN3-204ENST00000354497 TMEM205Q6UW68 189 aa10.56□□□□□ -0.72
RTN3-204ENST00000354497 CPEB2Q7Z5Q1 589 aaKnown RBP10.56□□□□□ -0.72
RTN3-204ENST00000354497 FGD2Q7Z6J4 655 aa10.56□□□□□ -0.72
RTN3-204ENST00000354497 CROCCP2Q86T23 111 aa10.56□□□□□ -0.72
RTN3-204ENST00000354497 CCDC71Q8IV32 467 aaPredicted RBP10.56□□□□□ -0.72
RTN3-204ENST00000354497 SLC22A15Q8IZD6 547 aa10.56□□□□□ -0.72
RTN3-204ENST00000354497 MARVELD2Q8N4S9 558 aa10.56□□□□□ -0.72
RTN3-204ENST00000354497 CPSF7Q8N684 471 aaKnown RBP10.56□□□□□ -0.72
RTN3-204ENST00000354497 HORMAD2Q8N7B1 307 aa10.56□□□□□ -0.72
RTN3-204ENST00000354497 AMER3Q8N944 861 aa10.56□□□□□ -0.72
RTN3-204ENST00000354497 OR2L3Q8NG85 312 aa10.56□□□□□ -0.72
RTN3-204ENST00000354497 DNAJC9Q8WXX5 260 aa10.56□□□□□ -0.72
RTN3-204ENST00000354497 CDKN2AIPNLQ96HQ2 116 aa10.56□□□□□ -0.72
RTN3-204ENST00000354497 ZFYVE21Q9BQ24 234 aa10.56□□□□□ -0.72
RTN3-204ENST00000354497 ACAT2Q9BWD1 397 aa10.56□□□□□ -0.72
RTN3-204ENST00000354497 RAB11FIP5Q9BXF6 653 aa10.56□□□□□ -0.72
RTN3-204ENST00000354497 POLDIP3Q9BY77 421 aaKnown RBP10.56□□□□□ -0.72
RTN3-204ENST00000354497 NSRP1Q9H0G5 558 aaKnown RBP10.56□□□□□ -0.72
RTN3-204ENST00000354497 LIME1Q9H400 295 aa10.56□□□□□ -0.72
RTN3-204ENST00000354497 PARVBQ9HBI1 364 aa10.56□□□□□ -0.72
RTN3-204ENST00000354497 PIH1D1Q9NWS0 290 aaKnown RBP10.56□□□□□ -0.72
RTN3-204ENST00000354497 IL20Q9NYY1 176 aa10.56□□□□□ -0.72
RTN3-204ENST00000354497 PTTG2Q9NZH5 202 aa10.56□□□□□ -0.72
RTN3-204ENST00000354497 C19orf25Q9UFG5 118 aaPredicted RBP10.56□□□□□ -0.72
RTN3-204ENST00000354497 ST6GALNAC2Q9UJ37 374 aa10.56□□□□□ -0.72
RTN3-204ENST00000354497 NENFQ9UMX5 172 aa10.56□□□□□ -0.72
RTN3-204ENST00000354497 RUVBL1Q9Y265 456 aaKnown RBP10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms